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View Structure Prediction Details

Protein: gi|15221015
Organism: Arabidopsis thaliana
Length: 1296 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

No multiple sequence alignment data found for gi|15221015.

Predicted Domain #1
Region A:
Residues: [1-210]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPPRKKPKSS ALKSNKQSSA NHSSQPSTFG IQQLFLRHIQ NSQSTSNSHT STADPVDQQN  60
   61 VNGLASDTAV LTPQNPLGTS NEKPDESKDM DQQLTEASPK ISKNLKRFSP GMLIKQSQDD 120
  121 CGGEITWKIS PVNERLRAAA KNIPKMMDLT ENSLGKQCPT SGITSKVEQW LSSPSKKASK 180
  181 RPAFATNRVM ERVNPSPDAE FEIVNTSSSG 

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [211-405]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 NSPFQTPPSL SCPHNKLPCT VTCSGACGSM GAGQHKKALL ELLDQVEDVI AVDDKTTDDV  60
   61 GIVMPQARVK DDIISSVVDC AVDEGPVSLP KMQNSINPDS YFLVLEVSEK RGSGSSSKGQ 120
  121 CPYKVLRLLD EHTGVECALY LWDEWFYSTV SPGDSINVIG EFDGDGKCDV DRQNNFLIVH 180
  181 PDTLVAGTRV AASFG

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #3
Region A:
Residues: [406-521]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 CPRRTVLDER LRSNEHATVA LLGTLQHQVF QAGLSQESPS VDGLQEYAST VIEKSIESLY  60
   61 ACGVHEGDVR STLFKAIPKM LNWIEHFRYS KDSEVSKVDF GSTIGKKAVK VSEVID

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #4
Region A:
Residues: [522-562]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 IEEMSWAPKY GLKGMIDASV RVIVESDMNT VNEKIMPLEF K

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #5
Region A:
Residues: [563-698]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 SGKAPSGQSS IEHSAQVILY TLLMSERYLK HIDNGLLYYL QSDQTQGISV QRSDLVGLII  60
   61 RRNELANDIL VASTTQQLPP MLRADGGNTE SSGLGDVFDT HVSHLSTLHF NFLRHWDRLI 120
  121 DLEGREMQLL RKDIAH

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #6
Region A:
Residues: [699-1296]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 PHGSKGSHSA SYLSSMVLDV TNGFQHHNSH KETRFIYRFV RQKSSESRER VTSEDMIRTG  60
   61 NLATDDLDCK LRTGDRVILR TEVSHLTVAN GIIADISRTH ISVSLSKRLR LPWSEPSSEV 120
  121 SNLSHELWRI YKDEFMTSFS VMRFNLMQLF VQNGHNIRKM IVDLEPPRFD NGSILSQDPA 180
  181 ISYIWSEKSL NNDQRQAILK ILTAKDYALI LGMPGTGKTS TMVHAVKALL IRGSSILLAS 240
  241 YTNSAVDNLL IKLKAQGIEF LRIGRDEAVH EEVRESCFSA MNMCSVEDIK KKLDQVKVVA 300
  301 STCLGINSPL LVNRRFDVCI IDEAGQIALP VSIGPLLFAS TFVLVGDHYQ LPPLVQSTEA 360
  361 RENGMGISLF RRLSEAHPQA ISVLQNQYRM CRGIMELSNA LIYGDRLCCG SAEVADATLV 420
  421 LSTSSSTSPW LKKVLEPTRT VVFVNTDMLR AFEARDQNAI NNPVEASIIA EIVEELVNNG 480
  481 VDSKDIGIIT PYNSQASLIQ HAIPTTPVEI HTIDKYQGRD KDCILVSFVR SREKPRSSAS 540
  541 SLLGDWHRIN VALTRAKKKL IMVGSQRTLS RVPLLMLLLN KVKEQSGILN LLPGDLKP

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 130.0
Match: 2gjkA
Description: No description for 2gjkA was found.

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle