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View Structure Prediction Details

Protein: CCA34_ARATH
Organism: Arabidopsis thaliana
Length: 370 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CCA34_ARATH.

Description E-value Query
Range
Subject
Range
gi|12325402, gi|... - pir||A96513 probable cyclin, 23571-21736 [imported] - Arabidopsis thaliana, gi|21593219|gb|AAM65168....
337.0 [0..1] [370..1]

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Predicted Domain #1
Region A:
Residues: [1-87]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAENQNCARM TRAAAKRKAS SMALDENPVS KKRVVLGELP NMSNVVAVPN QERETLKAKT  60
   61 SVNTSKRQMK KALMIPEASV LIESRSV

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [88-370]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 DPQMCEPFAS DICAYLREME GKPKHRPLPD YIEKVQSDLT PHMRAVLVDW LVEVAEEYKL  60
   61 VSDTLYLTIS YVDRFLSVKP INRQKLQLVG VSAMLIASRK YEEIGPPKVE DFCYITDNTF 120
  121 TKQEVVSMEA DILLALQFEL GSPTIKTFLR RFTRVAQEDF KDSQLQIEFL CCYLSELSML 180
  181 DYTCVKYLPS LLSASAVFLA RFIIRPKQHP WNQMLEEYTK YKAADLQVCV GIIHDLYLSR 240
  241 RGNTLEAVRN KYKQHKYKCV ATMPVSPELP LAFFEDITIR GMA

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 66.69897
Match: 2b9rA
Description: No description for 2b9rA was found.

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle