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View Structure Prediction Details

Protein: gi|15223394
Organism: Arabidopsis thaliana
Length: 475 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|15223394.

Description E-value Query
Range
Subject
Range
gi|113548993, gi... - gi|115453843|ref|NP_001050522.1| Os03g0571900 [Oryza sativa (japonica cultivar-group)], gi|113548993...
324.0 [0..24] [469..636]

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Predicted Domain #1
Region A:
Residues: [1-242]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAGRGGELTE ALVKKTGREE EDELGMKEKV WIESKKLWVV AAPAIFTRYS TFGVSMVTQA  60
   61 FIGHLGPTEL AAYSITFTIL LRFSNGILLG MAGALGTLCG QAYGAKQYQM LGIYLQRSWI 120
  121 VLTGGTICLM PVFIFAGPIL LALGQEERIV RVARVLALWV IGINFSFVPS FTCQMFLQAQ 180
  181 SKNKIISYVT AVSLGLHVFF SWLLVAHFNF GITGAMTSML IAFWLPIIVQ LLYVTCGGCK 240
  241 DT

[Run NCBI BLAST on this sequence.]

Detection Method: Pfam
Confidence: 35.468521
Match: PF01554.9
Description: No description for PF01554.9 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [243-475]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 WRGFSMLAFK DLWPVLKLSL SSGGMLCLEL WYNSVLVLLT GNLKNAEVAL DALAICISIN  60
   61 ALEMMIALGF LAAVSVRVSN ELGSGNPKGA KFATLIAVFT GRISYIFTTS EAVAAEVADL 120
  121 SPLLAFSILL NSVQPVLSGV AIGAGWQGYV AYVNLACYYL VGIPIGVILG YVVGLQVKGV 180
  181 WIGMLFGIFV QTCVLTVMTL RTDWDQQVST SLRNINRWVV PESRDANQIS SEE

[Run NCBI BLAST on this sequence.]

Detection Method: Pfam
Confidence: 24.200659
Match: PF01554.9
Description: No description for PF01554.9 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle