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View Structure Prediction Details

Protein: gi|15217714
Organism: Arabidopsis thaliana
Length: 1468 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

No multiple sequence alignment data found for gi|15217714.

Predicted Domain #1
Region A:
Residues: [1-538]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAGNKANDEV PRKQHGPGKE KRVLRVSPRR KRSATKATEE LGSPSVAPTE DLTVEELPPR  60
   61 LFALDRYPSE TKMNAYSKPE YISDIAKVLK GKPEMQFLLD SPFGKLFKIP KNKASFNAKL 120
  121 VLGLICRQLV TKKVNEMWIV FGGHPIRFGL REFSILTGLE CGKYPKKKDV DDVISVKPEC 180
  181 ESVWNTLFHE RFGDTVPTIA DLVSWLQEEE SMEGWNQLAL SLIILVDGVV AAHSNPNRPT 240
  241 SKTVEMTKNL EFFCKYPWGR VSFTRTLGRI ANFQTPYDAQ KLIRGILVGS YALHGFPLAL 300
  301 QLLAFETIPS IAKLGPDDVP NRTFAERSIH RLASLRAIRT SRILECEAAD EVNYIVKPAD 360
  361 NVCPPSLSWD DEVDDPRVDY IEALLIDGHQ WQEDEWVGGY ARVPKQSRPP QLEETDVKRK 420
  421 RNAPGPSPKE PAMKKQKSEM DCDKEETTED CFGELVPERF IVEMRRSLKE LEDQMYQMHE 480
  481 DMKDFVRDQI RATLDPKGKR PEQTIPSHDS REPPTSMDKA PVTAKKPSRR MSTKGSTG

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 3.69897
Match: 2dfsA
Description: No description for 2dfsA was found.

Predicted Domain #2
Region A:
Residues: [539-588]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 TRKSSRLTRV SHDVDTPALS VGCNSKEEDL DVPGIHTTAF GGRRKPSKPK 

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 27.30103
Match: 1i84S
Description: Heavy meromyosin subfragment
Matching Structure (courtesy of the PDB):

Predicted Domain #3
Region A:
Residues: [589-761]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 KNVSFAVDTI EEPDSNKEDM QGFIDEQDGA NNESDFTAND GLNSSAAEEE ILDTGFLIVP  60
   61 YAGSTQSHLD RGNVVVGKTV CLGSMSGTVF VTQEERPVEE ATVDTEMEEV PSNVSARVSE 120
  121 DNGPKDVAEP GLVGTHTGAD EIADADIEMV DNPSGLPSTS AQEEARDASA STE

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #4
Region A:
Residues: [762-947]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 ANGSESEEIY EPSDGDTAHV EAAGESKLVT VMEVEIPEKT HSDPPSPFQV IRELDTKAVG  60
   61 DLAAATNLEV VMEEPCIVEG SVETEDPNPG SDEADKTDIP KNNDESDNPA AVEAKEEKKS 120
  121 SPKKVKKQLV YEQDDAHPHG FKAKTVLVPD VPAQQIEVVI RAGNVSYNPL DVVDPSKVEE 180
  181 FSNIIK

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #5
Region A:
Residues: [948-1224]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 GPSVIHTLFG FRKVPNDFFA NLLTPGEWVE STHLEMMAML MWHKNGEQMI ANRCIVLDMM  60
   61 LTHLLTKRVG DFKKCINKNG FKWGKLLSDI ANGVHINREP NMKWMKDVDV VYAPMNWKSE 120
  121 HWVALGINLN ERLITVYDAL ISHTRESAVK ARMTPICEMM SYLVRAMCQD VLISPYSVEP 180
  181 FEYVRCPTVA QNPTTGDCGP YTMKFLELLA FGHPFSDLTT IREADYVFYR QKYSVDIYEH 240
  241 GKREAGTVHL PTLTNTSMTF ISTVIAPTKF TVVVIKV

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 36.30103
Match: 2g4dA
Description: No description for 2g4dA was found.

Predicted Domain #6
Region A:
Residues: [1225-1358]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 KKLLTTSDYL ISNMVNPTLP DDLLSKIAKN LADQCWSDLR PLVRAGTRGR DIVYRPDVLK  60
   61 DANILTLCDS PDDFQAGGGH NPSGSADEGR HRTFFLRCFT ANNPTAVYYE GIRVLTHERN 120
  121 INGAIRLLQR HAPV

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #7
Region A:
Residues: [1359-1468]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 RANATLACAI VFICAGYDYM GGLFLQLFTR NHYPLDSVAT RVLGDEFIEE IKKFDPPYSN  60
   61 TYGPTFSYPT SHGISMPPCA LYCYMVSGAF QNVCNRCYLW SCARRVSQML 

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle