YRC Public Data Repository - Protein Structure Prediction

Protein:	CALS7_ARATH
Organism:	Arabidopsis thaliana
Length:	1933 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CALS7_ARATH.

Description	E-value	Query Range	Subject Range
gi\|13649388 - gi\|13649388\|gb\|AAK37413.1\|AF237733_1 callose synthase 1 catalytic subunit [Arabidopsis thaliana]	2404.0	[0..6]	[1933..2]
gi\|54291339 - gi\|54291339\|dbj\|BAD62105.1\| putative callose synthase 1 catalytic subunit [Oryza sativa Japonica Gro...	2389.0	[0..3]	[1933..2]
gi\|23503034 - gi\|23503034\|gb\|AAK49452.2\|AF304372_1 putative beta-1,3-glucan synthase [Nicotiana alata]	2333.0	[0..4]	[1928..2]
gi\|92896783 - gi\|92896783\|gb\|ABE93351.1\| IMP dehydrogenase/GMP reductase [Medicago truncatula]	2302.0	[0..1]	[1933..1]

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Predicted Domain #1

Region A:
Residues: [1-236]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MASTSSGGRG EDGRPPQMQP VRSMSRKMTR AGTMMIEHPN EDERPIDSEL VPSSLASIAP  60
   61 ILRVANDIDQ DNARVAYLCR FHAFEKAHRM DPTSSGRGVR QFKTYLLHKL EEEEEITEHM 120
  121 LAKSDPREIQ LYYQTFYENN IQDGEGKKTP EEMAKLYQIA TVLYDVLKTV VPQARIDDKT 180
  181 LRYAKEVERK KEQYEHYNIL PLYALGAKTA VMELPEIKAA ILAVCNVDNL PRPRFH

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [237-356]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 SASANLDEVD RERGRSFNDI LEWLALVFGF QRGNVANQRE HLILLLANID VRKRDLENYV  60
   61 EIKPSTVRKL MEKYFKNYNS WCKYLRCDSY LRFPAGCDKQ QLSLLYIGLY LLIWGEASNV 120
  121

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #3

Region A:
Residues: [357-483]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 RFMPECLCYI FHNMANEVHG ILFGNVYPVT GDTYEAGAPD EEAFLRNVIT PIYQVLRKEV  60
   61 RRNKNGKASH SKWRNYDDLN EYFWDKRCFR LKWPMNFKAD FFIHTDEISQ VPNQRHDQVS 120
  121 HGKRKPK

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #4

Region A:
Residues: [484-565]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 TNFVEARTFW NLYRSFDRMW MFLVLSLQTM IIVAWHPSGS ILAIFTEDVF RNVLTIFITS  60
   61 AFLNLLQATL DLVLSFGAWK SL

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #5

Region A:
Residues: [566-680]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 KFSQIMRYIT KFLMAAMWAI MLPITYSKSV QNPTGLIKFF SSWVGSWLHR SLYDYAIALY  60
   61 VLPNILAAVF FLLPPLRRIM ERSNMRIVTL IMWWAQPKLY IGRGMHEEMF ALFKY

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #6

Region A:
Residues: [681-798]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 TFFWVMLLLS KLAFSYYVEI LPLVNPTKLI WDMHVVNYEW HEFFPNATHN IGVIIAIWGP  60
   61 IVLVYFMDTQ IWYAIFSTLF GGIYGAFSHL GEIRTLGMLR SRFKVVPSAF CSKLTPLP

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #7

Region A:
Residues: [799-897]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 LGHAKRKHLD ETVDEKDIAR FSQMWNKFIH TMRDEDLISD RERDLLLVPS SSGDVTVVQW  60
   61 PPFLLASKIP IALDMAKDFK GKEDVDLFKK IKSEYYMHY

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #8

Region A:
Residues: [898-1072]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 AVVEAYETVR DIIYGLLQDE SDKRIVREIC YEVDISIQQH RFLSEFRMTG MPLLSDKLEK  60
   61 FLKILLSDYE EDDYKSQIIN VLQDIIEIIT QDVMVNGHEI LERAHLQSGD IESDKKEQRF 120
  121 EKIDLSLTQN ISWREKVVRL LLLLTVKESA INIPQSLEAR RRMTFFANSL FMNMP

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #9

Region A:
Residues: [1073-1223]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 DAPRVRDMLS FSVLTPYYKE DVLYSEEELN KENEDGITIL FYLQRIYPEE WSNYCERVND  60
   61 LKRNLSEKDK AEQLRQWVSY RGQTLSRTVR GMMYYRVALE LQCFQEYTEE NATNGGYLPS 120
  121 ESNEDDRKAF SDRARALADL KFTYVVSCQV Y

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #10

Region A:
Residues: [1224-1323]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 GNQKKSSESR DRSCYNNILQ LMLKYPSLRV AYIDEREETV NGKSQKVFYS VLLKGCDKLD  60
   61 EEIYRIKLPG PPTEIGEGKP ENQNHAIIFT RGEALQTIDM

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #11

Region A:
Residues: [1324-1443]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 NQDNYFEECF KMRNVLQEFD EGRRGKRNPT ILGLREHIFT GSVSSLAWFM SNQETSFVTI  60
   61 GQRVLANPLR VRFHYGHPDI FDRIFHITRG GISKASKIIN LSEDIFAGYN STLRGGYVTH 120
  121

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #12

Region A:
Residues: [1444-1644]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 HEYIQAGKGR DVGMNQISFF EAKVANGNGE QTLSRDVYRL GRRFDFYRML SFYFTTVGFY  60
   61 FSSMITVLTV YVFLYGRLYL VLSGLEKNIL QSASVHESNA LEQALAAQSV FQLGFLMVLP 120
  121 MVMEIGLEKG FRTALGDFII MQLQLASVFF TFQLGTKAHY FGRTILHGGS KYRATGRGFV 180
  181 VFHAKFAENY RLYSRSHFVK G

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #13

Region A:
Residues: [1645-1736]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 LELVILLVVY QVYGTSYRSS STYMYITFSM WFLVTSWLFA PFIFNPSGFE WQKTVDDWTD  60
   61 WKRWMGNRGG IGIVLDKSWE SWWDIEQEHL KH

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #14

Region A:
Residues: [1737-1845]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 TNLRGRVLEI LLALRFLLYQ YGIVYHLNIA RRHTTFLVYG LSWAILLSVL LVLKMVSMGR  60
   61 RKFGTDFQVM FRILKALLFL GFLSVMTVLF VVCGLTISDL FASILAFLP

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #15

Region A:
Residues: [1846-1933]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 TGWAILLIGQ ALRSVFKGLG FWDSVKELGR AYEYIMGLVI FTPIAVLSWF PFVSEFQTRL  60
   61 LFNQAFSRGL QISMILAGKK DKETPSTK

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.2	NCBI nr	03/2009
PSI-BLAST	2.2.22	FFAS	ffas03
PDB	10/2008	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits