YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

View Structure Prediction Details

Protein: NFYA8_ARATH
Organism: Arabidopsis thaliana
Length: 328 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



[What does the above image mean?]


[Show Ginzu Version Information]


Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for NFYA8_ARATH.

Description E-value Query
Range
Subject
Range
gi|8778470 - gi|8778470|gb|AAF79478.1|AC022492_22 F1L3.29 [Arabidopsis thaliana]
429.0 [0..1] [328..1]
gi|92873024, gi|... - gi|92892977|gb|ABE91491.1| CCAAT-binding transcription factor, subunit B [Medicago truncatula], gi|9...
257.0 [0..3] [328..2]
gi|108708770, gi... - gi|57222442|gb|AAW39026.1| putative CCAAT-binding transcription factor [Oryza sativa (japonica culti...
237.0 [0..60] [306..40]

Back

Predicted Domain #1
Region A:
Residues: [1-152]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDKKVSFTSS VAHSTPPYLS TSISWGLPTK SNGVTESLSL KVVDARPERL INTKNISFQD  60
   61 QDSSSTLSSA QSSNDVTSSG DDNPSRQISF LAHSDVCKGF EETQRKRFAI KSGSSTAGIA 120
  121 DIHSSPSKAN FSFHYADPHF GGLMPAAYLP QA

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [153-239]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 TIWNPQMTRV PLPFDLIENE PVFVNAKQFH AIMRRRQQRA KLEAQNKLIK ARKPYLHESR  60
   61 HVHALKRPRG SGGRFLNTKK LQESTDP

[Run NCBI BLAST on this sequence.]

Detection Method: Pfam
Confidence: 37.537602
Match: PF02045.6
Description: No description for PF02045.6 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #3
Region A:
Residues: [240-328]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 KQDMPIQQQH ATGNMSRFVL YQLQNSNDCD CSTTSRSDIT SASDSVNLFG HSEFLISDCP  60
   61 SQTNPTMYVH GQSNDMHGGR NTHHFSVHI

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle