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View Structure Prediction Details

Protein: gi|42567760, gi|...
Organism: Arabidopsis thaliana
Length: 434 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|42567760, gi|....

Description E-value Query
Range
Subject
Range
gi|72255605 - gi|72255605|gb|AAZ66923.1| 117M18_4 [Brassica rapa]
378.0 [0..1] [434..1]
gi|25044845 - gi|25044845|gb|AAM28290.1| putative ATP/GTP binding protein [Ananas comosus]
377.0 [0..109] [434..39]
gi|116310042, gi... - gi|218195754|gb|EEC78181.1| hypothetical protein OsI_17778 [Oryza sativa Indica Group], gi|116310042...
gi|215678905, gi... - gi|50929375|ref|XP_474215.1| OSJNBa0015K02.19 [Oryza sativa (japonica cultivar-group)], gi|38345203|...
373.0 [0..126] [434..39]
gi|72384404 - gi|72384404|gb|AAZ67520.1| 4D11_6 [Brassica rapa subsp. pekinensis]
370.0 [0..1] [434..1]
gi|15238294, gi|... - gi|8843755|dbj|BAA97303.1| unnamed protein product [Arabidopsis thaliana], gi|15238294|ref|NP_201296...
322.0 [0..79] [419..120]
gi|60464566, gi|... - gi|66804979|ref|XP_636222.1| myosin [Dictyostelium discoideum AX4], gi|60464566|gb|EAL62703.1| myosi...
MYOH_DICDI - Myosin-H heavy chain OS=Dictyostelium discoideum GN=myoH PE=4 SV=2
308.0 [0..151] [434..1751]
ctg02_2|10370|AT... - binding protein, putative
gi|29248899, gi|... - gi|71076147|ref|XP_770594.1| ATP/GTP binding protein [Giardia lamblia ATCC 50803], gi|29248899|gb|EA...
GL50803_10370 - | organism=Giardia_Assemblage_A_isolate_WB | product=ATP/GTP binding protein, putative | location=GL...
260.0 [0..151] [433..47]
gi|70885521 - gi|70885521|gb|EAN98335.1| trans-sialidase, putative [Trypanosoma cruzi]
gi|71666455 - gi|71666455|ref|XP_820186.1| trans-sialidase [Trypanosoma cruzi strain CL Brener]
145.0 [0..3] [191..828]

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Predicted Domain #1
Region A:
Residues: [1-188]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKKGAKRKGV SKAGRKAAVA ETQNDEVIEE TTKTTQEESQ QHEEEVVDEV KENGEEEEAK  60
   61 GDQEEEEDAK PDSLEEDEEN QEDEVKAEEV KEEVEKKPVA RRGGKRKRAT KKDTEIKDEK 120
  121 KPVPKAKKPR AAKVKEEPVY FEEKRSLEDL WKVAFPVGTE WDQLDALYEF NWDFQNLEEA 180
  181 LEEGGKLY

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 3.69897
Match: 2i1jA
Description: No description for 2i1jA was found.

Predicted Domain #2
Region A:
Residues: [189-323]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 GKKVYVFGCT EPQLVPYKGA NKIVHVPAVV VIESPFPPSD KIGITSVQRE VEEIIPMKKM  60
   61 KMDWLPYIPI EKRDRQVDKM NSQIFTLGCT QRRSALRHMK EDQLKKFEYC LPYFYQPFKE 120
  121 DELEQSTEVQ IMFPS

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #3
Region A:
Residues: [324-434]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 EPPVVCEFDW EFDELQEFVD KLVEEEALPA EQADEFKEYV KEQVRAAKKA NREAKDARKK  60
   61 AIEEMSEDTK QAFQKMKFYK FYPQPSPDTP DVSGVQSPFI NRYYGKAHEV L

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle