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View Structure Prediction Details

Protein: RH30_ARATH
Organism: Arabidopsis thaliana
Length: 591 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for RH30_ARATH.

Description E-value Query
Range
Subject
Range
gi|10177293 - gi|10177293|dbj|BAB10554.1| ATP-dependent RNA helicase-like protein [Arabidopsis thaliana]
451.0 [0..28] [591..1]

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Predicted Domain #1
Region A:
Residues: [1-106]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSSYDRRFAD PNSYRQRSGA PVGSSQPMDP SAAPYNPRYT GGGGGYGPSP VMAGDNSGYN  60
   61 RYPSFQPPSG GFSVGRGGGR GGYGQYGDRN GGGNWGGGGG RGGSSK

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [107-591]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 RELDSVSLPK QNFGNLVHFE KNFYVESPTV QAMTEQDVAM YRTERDISVE GRDVPKPMKM  60
   61 FQDANFPDNI LEAIAKLGFT EPTPIQAQGW PMALKGRDLI GIAETGSGKT LAYLLPALVH 120
  121 VSAQPRLGQD DGPIVLILAP TRELAVQIQE ESRKFGLRSG VRSTCIYGGA PKGPQIRDLR 180
  181 RGVEIVIATP GRLIDMLECQ HTNLKRVTYL VLDEADRMLD MGFEPQIRKI VSQIRPDRQT 240
  241 LLWSATWPRE VETLARQFLR DPYKAIIGST DLKANQSINQ VIEIVPTPEK YNRLLTLLKQ 300
  301 LMDGSKILIF VETKRGCDQV TRQLRMDGWP ALAIHGDKTQ SERDRVLAEF KSGRSPIMTA 360
  361 TDVAARGLDV KDIKCVVNYD FPNTLEDYIH RIGRTGRAGA KGMAFTFFTH DNAKFARELV 420
  421 KILQEAGQVV PPTLSALVRS SGSGYGGSGG GRNFRPRGGG RGGGFGDKRS RSTSNFVPHG 480
  481 GKRTW

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 95.0
Match: 2db3A
Description: No description for 2db3A was found.

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle