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View Structure Prediction Details

Protein: IQM5_ARATH
Organism: Arabidopsis thaliana
Length: 495 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for IQM5_ARATH.

Description E-value Query
Range
Subject
Range
gi|8777441 - gi|8777441|dbj|BAA97031.1| unnamed protein product [Arabidopsis thaliana]
674.0 [0..1] [495..1]
gi|87162721 - gi|87162721|gb|ABD28516.1| IQ calmodulin-binding region [Medicago truncatula]
555.0 [0..53] [490..33]
gi|52077496, gi|... - gi|52077496|dbj|BAD45140.1| putative calmodulin-binding protein [Oryza sativa Japonica Group], gi|11...
533.0 [0..63] [493..45]

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Predicted Domain #1
Region A:
Residues: [1-316]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MALSFGYLQR DNSFKKDSQE CETPRIRKTP VNMYLEKTLS FKDLVDQRNN YRDGNCGVKT  60
   61 RKGINLKGPK PDNMILDRSL SFTSLVQVEN RGGEEEDERG SSPKRRNRGN LTALSLPAPT 120
  121 PFWSPRPSTE LDAAAVTLQK VYKSYRTRRN LADCAVVVEE LWWKELELAK LEPNKTNDKP 180
  181 ESAVSRWARA GTKAAKVGKG LLKDDKAQKL ALRHWLEAID PRHRYGHNLH LYYDVWSESE 240
  241 STQPFFFWLD IGDGKEVNLN KCSRTLLQRQ CITYLGPKER QAYEVVVEDG KLVSRQTKSL 300
  301 VETTEGTKWI FVLSTT

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 7.154902
Match: 2dfsA
Description: No description for 2dfsA was found.

Predicted Domain #2
Region A:
Residues: [317-405]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 RKLYIGQKQK GRFQHSSFLS GAAITAAGRI VSHDGVVKAV WPYSGHYLPT EENFREFICF  60
   61 LRENHVNLTN VKMNAIDDDD HLVNNDGST

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

    MCM
Score
GO
Score
GO
Term
SCOP
Match
SCOP Description
View Download 0.850 N/A N/A c.52.1 Restriction endonuclease-like
View Download 0.772 N/A N/A d.58.4 Dimeric alpha+beta barrel
View Download 0.737 N/A N/A d.52.8 Description not found.
View Download 0.726 N/A N/A d.52.6 BolA-like
View Download 0.714 N/A N/A d.52.3 Prokaryotic type KH domain (KH-domain type II)
View Download 0.669 N/A N/A c.102.1 Cell-division inhibitor MinC, N-terminal domain
View Download 0.667 N/A N/A c.52.2 tRNA splicing endonuclease, C-terminal domain
View Download 0.667 N/A N/A d.52.5 Probable GTPase Der, C-terminal domain
View Download 0.667 N/A N/A d.52.5 Probable GTPase Der, C-terminal domain
View Download 0.649 N/A N/A d.52.5 Probable GTPase Der, C-terminal domain
View Download 0.649 N/A N/A d.52.5 Probable GTPase Der, C-terminal domain
View Download 0.603 N/A N/A d.16.1 FAD-linked reductases, C-terminal domain
View Download 0.574 N/A N/A d.52.5 Probable GTPase Der, C-terminal domain

Predicted Domain #3
Region A:
Residues: [406-495]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 KPSMMVAKSD GSDEQKRFSC KWSTGNGPRI GCVRDYPMDL QTRALEQVNL SPRVVNGTMG  60
   61 LFGPIPSPRP SPKIRVSPRL SCMGLPSPRH 

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

    MCM
Score
GO
Score
GO
Term
SCOP
Match
SCOP Description
View Download 0.578 N/A N/A d.15.1 Ubiquitin-like
View Download 0.448 N/A N/A d.15.1 Ubiquitin-like
View Download 0.430 N/A N/A d.15.2 CAD & PB1 domains
View Download 0.419 N/A N/A d.15.2 CAD & PB1 domains
View Download 0.411 N/A N/A d.15.2 CAD & PB1 domains
View Download 0.411 N/A N/A d.15.2 CAD & PB1 domains
View Download 0.411 N/A N/A d.15.1 Ubiquitin-like
View Download 0.354 N/A N/A d.15.1 Ubiquitin-like
View Download 0.349 N/A N/A b.1.1 Immunoglobulin


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle