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View Structure Prediction Details

Protein: DGP15_ARATH
Organism: Arabidopsis thaliana
Length: 198 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for DGP15_ARATH.

Description E-value Query
Range
Subject
Range
gi|78224552, gi|... - gi|78224552|ref|YP_386299.1| peptidase S1C, Do [Geobacter metallireducens GS-15], gi|78195807|gb|ABB...
171.0 [0..13] [195..13]

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Predicted Domain #1
Region A:
Residues: [1-198]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSNQVNDISY VSLIQVNIVL NKNIILWLGS ATPRALRDID LAQDSVVKIF SFSREPNVVQ  60
   61 PWQTTEKEYS SSGFAISGRR ILTNAHVVGD HSYLQVRKHG SPTKYKAEVK AFGIFGARRY 120
  121 TFIGETIYAL GYPRDGDIIS VTKGIVTRVE PQKYAHSSIE ILTIQTDACI NGGKSGGPVV 180
  181 MGNKVAGVVF ENDSPSDK

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 39.045757
Match: 1l1jA
Description: Protease Do (DegP, HtrA), catalytic domain
Matching Structure (courtesy of the PDB):

Predicted functions:

Term Confidence Notes
catalytic activity 0.879220468838319 bayes_pls_golite062009
hydrolase activity 0.83105139693348 bayes_pls_golite062009
peptidase activity 0.81546887337164 bayes_pls_golite062009
peptidase activity, acting on L-amino acid peptides 0.5672666868164 bayes_pls_golite062009
serine hydrolase activity 0.50826037975448 bayes_pls_golite062009
serine-type peptidase activity 0.508252655710209 bayes_pls_golite062009
endopeptidase activity 0.264500844139819 bayes_pls_golite062009
serine-type endopeptidase activity 0.201782736081951 bayes_pls_golite062009

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle