YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

View Structure Prediction Details

Protein: gi|42573309
Organism: Arabidopsis thaliana
Length: 351 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



[What does the above image mean?]


[Show Ginzu Version Information]


Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|42573309.

Description E-value Query
Range
Subject
Range
RIBF2_ARATH - FAD synthetase 2, chloroplastic OS=Arabidopsis thaliana GN=RIBF2 PE=1 SV=1
318.0 [0..1] [350..1]

Back

Predicted Domain #1
Region A:
Residues: [1-93]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLCGGSRVLQ HLSDHNHHNS IGLGLGFCGA KIVQLSSFFL RPSQAMAKSH HFSRKLRQRM  60
   61 ISSFGSHCRT SGEVPILHNC FSQREDDPEL PVE

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 4.154902
Match: 2nwhA
Description: No description for 2nwhA was found.

Predicted Domain #2
Region A:
Residues: [94-351]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 GLSPVSGGIV ALGKFDALHI GHRELTIQAS RIGAPYLLSF VGMAEVLGWE PRAPIVAKCD  60
   61 RQRVLTSWAS YCGDRAPEEY EIEFASVRHL TPRQFVEKLS KELRVCGVVA GENYRFGYKA 120
  121 SGDASELVRL CEECGITACI INSVMDMKQG SAKRDSGDSK DRGQVSSTRV RQALAAGDMR 180
  181 YVSELLGRAH RLILRVRTQD MPSERMISVP RSSILNLPPG IGIYKACLLL VGDESSVPCT 240
  241 VVVDTSNIHV ETEERSQE

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 43.221849
Match: 1mrzA
Description: Crystal structure of a flavin binding protein from Thermotoga Maritima, TM379
Matching Structure (courtesy of the PDB):

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle