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View Structure Prediction Details

Protein: RDM3_ARATH
Organism: Arabidopsis thaliana
Length: 1493 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for RDM3_ARATH.

Description E-value Query
Range
Subject
Range
CO1A2_RAT - Collagen alpha-2(I) chain OS=Rattus norvegicus GN=Col1a2 PE=1 SV=3
567.0 [0..534] [1492..89]
gi|91083753 - gi|91083753|ref|XP_971465.1| PREDICTED: similar to Tubulin tyrosine ligase-like protein 2 (Testis-sp...
550.0 [0..629] [1368..280]
CO1A2_MOUSE - Collagen alpha-2(I) chain OS=Mus musculus GN=Col1a2 PE=1 SV=2
540.0 [0..534] [1492..89]
gi|23491005 - gi|23491005|gb|EAA22644.1| similar to suppressor of Ty 5 homolog [Plasmodium yoelii yoelii]
gi|83317252 - gi|83317252|ref|XP_731079.1| hypothetical protein [Plasmodium yoelii yoelii str. 17XNL]
532.0 [0..25] [535..107]
gi|19481644, gi|... - gi|22074292|gb|AAL06238.1| ORF2311 [white spot syndrome virus], gi|19481644|gb|AAL88920.1| WSSV052 [...
517.0 [0..524] [1492..275]
CO1A2_CANLF - Collagen alpha-2(I) chain OS=Canis lupus familiaris GN=COL1A2 PE=2 SV=2
509.0 [0..544] [1492..90]
gi|47551003, gi|... - gi|47551003|ref|NP_999675.1| alpha-2 collagen [Strongylocentrotus purpuratus], pir||A43426 collagen ...
506.0 [0..570] [1490..1821]

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Predicted Domain #1
Region A:
Residues: [1-127]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDRKGKGKQV AGSDSYSGGQ KRKNSVEFRD EGLRIKKRKN PEVLQFFEES AEVGYYGGSS  60
   61 DEDDDGLGFL NDMEDEPEVE ESSKAGKGEK GKSSFVFPKE EDLNEEEFDR IMEERYKPGS 120
  121 GFLRYAD

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [128-297]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 DDIKDAIEMD ALAPTSKDPP IWKVKCAIGR ERRSVFCLMH KFVELRKIGT KLEIISVFSV  60
   61 DHVKGFIFIE ADKEHDVLEA CKSLVGIYAT RMVLLPKAET PNLLTVQKKT KKVSEGTWAR 120
  121 VKNGKYKGDL AQIVAVSDTR NKALIKLIPR IDIQALTQKY GGGVTVQKGQ 

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 8.09691
Match: 2exuA
Description: No description for 2exuA was found.

Predicted Domain #3
Region A:
Residues: [298-533]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 TPAPRLISSS ELEEFRPLIQ VRRDRDTGIT FEHLDSLMLK DGYLYKKVSL DSISSWGVIP  60
   61 TKDELLKFTP VDRKETGDVE WISEIYGEER KKKILPTCRE GGKGEGSGGG KGEGSGGGKG 120
  121 EGSRGGKGEG SSDFKSESSY ELYNLVCFSR KDFGLIVGVD DKGDGYKVLK EGIDGPVVVT 180
  181 VGKKEMQNGP FDSKFTALDL NKKQISVNDV VKISKGPSEG KQGVVRQVYR GIIFLY

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #4
Region A:
Residues: [534-1493]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 DESEEENGGY FCCKSQSCEK VKLFTEESNE KTGGFDGTAF EDFVSSPKSP LSPEKEWQPR  60
   61 ERYNSSNQGD IGSTYSIGQK LRIRVGPLKG YLCRVIALRY SDVTVKLDSQ HKIFTVKSEH 120
  121 LAEVRDRNTV LSTSGDAGTG SFQPFGMLGT ESSTGDWAIG AGTSSEGGNW NIGGPSTDSH 180
  181 ESLNIERNMV QLCREKNPWG GSKPTSDVSP TVADDNTSAW ANAAAENKPA SASDQPGGWN 240
  241 PWGKTPASEA GTVSGWGDTS ASNVEASSWE KQGASTSNVA DLGSWGTHGG SSGGNKQDED 300
  301 SVWGKLCEAS ESSQKKEESS WGKKGGSDGE SSWGNKDGNS SASKKDGVSW GQQDKGSDES 360
  361 KGGSAWSNQC GDFGSGKKKD GSSGWNKSAE DSNANSKGVP DWGQPNDGSS WGKKGDGAAS 420
  421 WGKKDDGGSW GKKDDGNKDD GGSSWGKKDD GQKDDGGSSW EKKFDGGSSW GKKDDGGSSW 480
  481 GKKDDGGSLW GKKDDGGSSW GKEDDGGSLW GKKDDGESSW GKKDDGESSW GKKDDGGSSW 540
  541 GKKDEGGYSE QTFDRGGRGF GGRRGGGRRG GRDQFGRGSS FGNSEDPAPW SKPSGGSSWG 600
  601 KQDGDGGGSS WGKENDAGGG SSWGKQDNGV GSSWGKQNDG SGGGSSWGKQ NDAGGGSSWG 660
  661 KQDSGGDGSS WGKQDGGGDS GSAWGKQNNT SGGSSWGKQS DAGGGSSWGK QDGGGGGSSW 720
  721 GKQDGGGGSG SAWGKQNETS NGSSWGKQND SGGGSSWGKQ DGGGGGSSWG KQNDGGGGSS 780
  781 WGKQGDGGSK PWNEHSGGGR GFGERRGGGG FRGGRNQSGR GGRSFDGGRS SSWKTDNQEN 840
  841 TWKSDQSGGS DWKKGWGEDS NNSKPSGSSA GGCAGNWPSW DTNSKKETND KPGDDSKSAW 900
  901 GTSNDQVNTD NNNDSWNKKP NNDVGTSGEA DNAWGGKTNA VAPSPSGSAA WGTGDKKTGW 960
  961 

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 130.0
Match: 1y0fB
Description: No description for 1y0fB was found.

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle