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View Structure Prediction Details

Protein: gi|30681966, gi|...
Organism: Arabidopsis thaliana
Length: 193 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|30681966, gi|....

Description E-value Query
Range
Subject
Range
gi|15240298 - gi|15240298|ref|NP_200969.1| glycine-rich protein / oleosin [Arabidopsis thaliana]
146.0 [0..16] [187..12]

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Predicted Domain #1
Region A:
Residues: [1-71]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MFSFLILQVS EVFQVVIAAV VSIVFLVLAG LTLAGSATAL TITTPLFIIF SPILVPATIA  60
   61 TAVITTGLTA G

[Run NCBI BLAST on this sequence.]

Detection Method: Pfam
Confidence: 4.522879
Match: PF01277.8
Description: No description for PF01277.8 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [72-193]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 GALGTMAAAS LLSLRRRFGR RRFGGLRRFG GGRRFGGRFG KPGGGGLGGG GLPGGLGGLG  60
   61 GGGLPGGLGG LGGGENPLAK ISKMFGPGAA GAASGDAPPA ETAPAAGAAP AAGAEPAAPP 120
  121 TW

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 3.69897
Match: 1y0fB
Description: No description for 1y0fB was found.

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle