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View Structure Prediction Details

Protein: gi|42573537
Organism: Arabidopsis thaliana
Length: 358 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|42573537.

Description E-value Query
Range
Subject
Range
GDPD2_ARATH - Glycerophosphodiester phosphodiesterase GDPD2 OS=Arabidopsis thaliana GN=GDPD2 PE=2 SV=1
283.0 [0..2] [358..18]

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Predicted Domain #1
Region A:
Residues: [1-358]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MILSLITGLE LSKPTSFRLP GFSVIGHRGI GMNVLQSSDR RARGVKENSI LSFNSAAKYP  60
   61 IDFIEFDVQV TKDDCPVIFH DDFIYSEENG IVNESRVTDL SLSEFLLYGP QKETEKIGKT 120
  121 LMRKSKEGKV LKWDVDLDDS LCTLQEAFEQ VEQTLGFNIE LKFDDQTVYE REFLVHILRS 180
  181 VLQVVSNYAK DRPVIFSSFQ PDAAKLVREL QSTYPVFFLT DAGNEIHNDE RRNSLEEAIQ 240
  241 VCLEGGLQGI VSEVKGVFRN PAAISKIKES NLSLLTYGKL NNVGEAVYMQ YVMGIDGVIV 300
  301 DFVEEIIEST TRMMIRPPPS SSPLPSPSKD DDVAITRPEF SQKEISFLLK LLSQLIQH

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Detection Method: PSI-BLAST
Confidence: 53.39794
Match: 1t8qA
Description: Structural genomics, Crystal structure of Glycerophosphoryl diester phosphodiesterase from E. coli
Matching Structure (courtesy of the PDB):

Predicted functions:

Term Confidence Notes
catalytic activity 0.693222330136336 bayes_pls_golite062009
hydrolase activity 0.17768980721334 bayes_pls_golite062009
hydrolase activity, acting on ester bonds 0.05056572092175 bayes_pls_golite062009
phosphoric ester hydrolase activity 0.0304825793447705 bayes_pls_golite062009
phosphoric diester hydrolase activity 0.01534375493934 bayes_pls_golite062009

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle