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View Structure Prediction Details

Protein: ATR_ARATH
Organism: Arabidopsis thaliana
Length: 2702 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

No multiple sequence alignment data found for ATR_ARATH.

Predicted Domain #1
Region A:
Residues: [1-103]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAKDDNNLSS LVHELRERVA ASASTPANNL RHSSGDEDAL EIRFRAVIPN LLNTYVVPSL  60
   61 GNGREVTAVL KLVGHTARNI PGVFYHGTPS AILPVIARII PFF

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [104-181]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 AEPEFVPGHG VLLETVGSLL MLLRSNSRKA YRIFFHDALQ AIQDMQPIAS LHSIEPEVCE  60
   61 SHIPFRCFCM SFSGIGGD

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #3
Region A:
Residues: [182-388]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 LPDANKPRDG DGLVLNLLGA NRWQPFATCI LKLICKCLTE GTLYVQGLIH TSFFKAACSL  60
   61 VCCGGADVQM ACFEFATLVG SILTFNILPH VALIQSIILL LSADEGLPVY RNTIYDSTIG 120
  121 RFLTAVYSSC SDAAVKLTAE SLVLVLSHAL QRTKSEELKA SLCSAYVRIV KSCPPCIWKI 180
  181 HCLLELLHLP EPCFQLIECF KAVLIVL

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #4
Region A:
Residues: [389-473]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 GPGCVRVETT KCGSHTSATS DRPVQGINAG KKRHIEDEST YKRKRQKVGD DIRRGVYFAP  60
   61 EFADETDGKD AASLREMLIS TVESL

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #5
Region A:
Residues: [474-715]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 KPPPAGPSLS QTESSIVALS MLTNAFCFCP WTDMTHRLFN QMYAWIPWIA GQVEETNPIM  60
   61 FDISIYLEGI HNLLLVGVDP QYEYTSKGND LVAIQFLLKL PWTHYMLFKT PSSLVKSKCL 120
  121 SVGIWTKLGL QDGSDFDIFS WSLSDDFEQV QAVAAISMPL KVLFSGLGAL LHMFPKLEHL 180
  181 LEEKELMIKK AIPQSLGFLS CLYGSSTTDS EKTACHLLLH EDLKKDETLN SLLQGFRCSK 240
  241 CD

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #6
Region A:
Residues: [716-1298]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 KFIEREDEKH FRIIETPEMV KLKMDHHRDY FNLQSLYFNL LYDESSEETQ LACVEVIRRI  60
   61 LGHTSPDILV RTRSQWIRCL QYLLVHVNTD VREAFCAQIG IFVQHPIVSC LFLSEDATEK 120
  121 SCERNFFNLI EHSLAAAKDL LVIQTLLETT AEVMVAVDVT SELFLICLFL LIDQLDHPNL 180
  181 IVRINASKLI NRSCYIHVKG GFATLLSTAS HIQNELFDNL SVRLTSRPNV VREFAEAVLG 240
  241 VETEELVRKM VPAVLPKLLV YWQENAQAAN TLNELAKLID TDVVPLIVNW LPRVLAFALN 300
  301 QEEDKNLLSV LQLYHSQIGS DNQEIFAAAL PALLDELVCF VDIADTPETD RRLQRLPDAI 360
  361 KKISKVLTNA EDLPGFLQNH FVGLLNSIDR KMLHADDIFL QKQALKRIKL LIEMMGHYLS 420
  421 TYVPKLMVLL MHAIEKDALQ SEGLLVLHFF TRKLADVSPS SIKYVISQIF AALIPFLEKE 480
  481 KEGPHVYLDE VVKILEELVL KNRDIVKEHI CEFPLLPSIP SLGELNNAIQ EARGLMSLKD 540
  541 QLRDIVNGMK HENLNVRYMV ACELSKLLYN RNEDVAALIA GEL

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 24.0
Match: 2vglB
Description: No description for 2vglB was found.

Predicted Domain #7
Region A:
Residues: [1299-1382]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 VSDMEILSSL ITYLLQGCAE ESRTTVGQRL KLVCADCLGA IGAIDPAKVR VASCSRFKIQ  60
   61 CSDDDLIFEL IHKHLARAFR AAQD

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #8
Region A:
Residues: [1383-1945]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 TIIQDSAALA IQELLKIAGC EPSLAGNVVV LTPQEHVQVN VSGSRRCGGN NEVKDRGQKL  60
   61 WDRFSNYVKE LIAPCLTSRF QLPNVSDPGS AGPIYRPSMS FRRWLSYWIR KLTAFATGSR 120
  121 VSIFAACRGI VRHDMQTATY LLPYLVLDVV CHGTEAARLS ISEEILSVLD AAASENSGVT 180
  181 INSFGVGQSE VCVQAVFTLL DNLGQWVDDV KQGVALSSSL QSSGGRQVAP KSKDQVSNST 240
  241 TEQDHLLVQC KYVLELLLAI PKVTLARASF RCQAYARSLM YLESHVRGKS GSLNPAAEKT 300
  301 GIFENADVSS LMGIYSCLDE PDGLSGFASL SKSLNLQDQL LINKKSGNWA DVFTACEQAL 360
  361 QMEPTSVQRH SDVLNCLLNM CHHQTMVTHV DGLISRVPEY KKTWCTQGVQ AAWRLGKWDL 420
  421 MDEYLDGADA EGLLFSSSDS NASFDRDVAK ILHAMMKKDQ YSVAEGIAIS KQALIAPLAA 480
  481 AGMDSYTRAY PFVVKLHLLR ELEDFQAVLN GDSYLEKSFS TSDQVFSKAV DNWENRLRFT 540
  541 QSSLWTREPL LAFRRLVFGA SGL

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 12.69897
Match: 2gw1A
Description: No description for 2gw1A was found.

Predicted Domain #9
Region A:
Residues: [1946-2033]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 GAQVGNCWLQ YAKLCRLAGH YETAHRAILE AQASGAPNVH MEKAKLLWIT KRSDSAIIEL  60
   61 QQSLLNMPEG VVDSTVISSI NSLLMAPP

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #10
Region A:
Residues: [2034-2702]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 NPEPTVRNTQ SFKEKKDVAK TLLLYSKWIH HSGQKQKKDV LNLYTQVKEL LPWEKGYFHL  60
   61 AKYYDELYVD ARKCQQESSV FSSAGSKKGS VSSNLSTEKA GWDYLFKGMY FYAKALHSGH 120
  121 KNLFQALPRL LTLWFDFGTI YKTSGSAGNK ELKSTHMKIM SLMRGCLKDL PTYQWLTVLP 180
  181 QLVSRICHQN ADTVLMVKNI ITSVLHQFPQ QGLWIMAAVS KSTVPARREA AAEIIQGARK 240
  241 GFNQSDRGHN LFIQFASLTD HFIKLCFHGG QPRSKVINIA TEFSALKRMM PLDIIMPIQQ 300
  301 SLTISLPAFH MNNNERHSAS VFSGSDLPTI SGIADEAEIL SSLQRPKKII LLGNDGIEYP 360
  361 FLCKPKDDLR KDARMMEFTA MINRLLSKYP ESRRRKLYIR TFAVAPLTED CGLVEWVPHT 420
  421 RGLRHILQDI YISCGKFDRQ KTNPQIKRIY DQCAVKKEYE MLKTKILPMF PPVFHKWFLT 480
  481 TFSEPAAWFR SRVAYAHTTA VWSMVGHIVG LGDRHGENIL FDSTSGDCVH VDFSCLFDKG 540
  541 LQLEKPELVP FRLTQNMIDG LGITGYEGIF MRVCEITLTV LRTHRETLMS ILETFIHDPL 600
  601 VEWTKSHKSS GVEVQNPHAQ RAISSIEARL QGVVVGVPLP VEGQARRLIA DAVSLENLGK 660
  661 MYIWWMPWF

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 65.69897
Match: 1e7vA
Description: Phoshoinositide 3-kinase (PI3K) helical domain; Phoshoinositide 3-kinase (PI3K); Phoshoinositide 3-kinase (PI3K), catalytic domain
Matching Structure (courtesy of the PDB):

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle