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View Structure Prediction Details

Protein: PIGM_ARATH
Organism: Arabidopsis thaliana
Length: 450 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for PIGM_ARATH.

Description E-value Query
Range
Subject
Range
gi|115932072, gi... - gi|115932072|ref|XP_001188803.1| PREDICTED: similar to Pigm protein [Strongylocentrotus purpuratus],...
430.0 [0..25] [436..13]

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Predicted Domain #1
Region A:
Residues: [1-239]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSRESENTDD EPSKWMKFRS LLVFSMLLRV FLIVYGEWQD AHMEVRYTDV DYIVFSDAAS  60
   61 LMASGESPYK RTTYRYSPLL ALLLTPNSFF HRSWGKFLFS ASDLLVGWFI HKILKQRKVP 120
  121 EKICTYSVMV WLFNPFTFTI GTRGNCEPIV CAMILWIILC LMQGNLLQAA FWYGLVVHFR 180
  181 VYPIIYALPI ILVLDTQVFR SGQKPALLYW NTGQAKTPAS NMERKTFLFN LLTTLKSLF

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [240-326]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 SRERIMFALI SGGVFLACNA VSFYFYGQEF LHEALLYHLT RTDPRHNFSI YFYHIYLHYE  60
   61 RQFSAVEKLI SFLPQFTVQF ALVFCFS

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #3
Region A:
Residues: [327-450]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 QDLVFCIFLQ TVAFVTFNKV ITAQYFVWFY CLLPLILPWS HMKLKWEGLL CIIMWIGAQT  60
   61 HWLLWGYMLE FKGVNVFLPL WIASLLFLAA NTFVLVRIIQ RHRFSPLFRR YESSSSSNNV 120
  121 TKED

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle