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View Structure Prediction Details

Protein: RHF1A_ARATH
Organism: Arabidopsis thaliana
Length: 371 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for RHF1A_ARATH.

Description E-value Query
Range
Subject
Range
gi|26450997 - gi|26450997|dbj|BAC42605.1| putative RING-H2 finger protein RHF1a [Arabidopsis thaliana]
243.0 [0..1] [371..1]

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Predicted Domain #1
Region A:
Residues: [1-149]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSNFTYTSAF NLSDNSPFNP AIGSSSSSSS ALVVASDDDN NTDDACSICL EPFTLQDPST  60
   61 VTSCKHEYHL QCIIEWSQRS KECPICWQLF VLRDPASQEL LAAVEKERLL KTRNISSSSP 120
  121 ISIHHSHDDF HSEEEESQFS SFDEQFLRH

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 11.154902
Match: 2cklB
Description: No description for 2cklB was found.

Predicted Domain #2
Region A:
Residues: [150-371]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 LTEAAHRRCL LRRRDGQISS SLVSSSDPTT IHPTDLVNLY RLSAISHVEH QNSNPCPSPG  60
   61 SMTPSPVSGH SSIPADSNNG SRISPGPSPS RSSQSPKSPE ASSLPEAIKS KLAAASAKYK 120
  121 ESISKSKQGL KEKLLARNNS VKELSKGVQR EMNAGIAGVA RMIERMDFSS KRFGGSAHVS 180
  181 TSTATASGFN FSFKGKRVEA NSKSNNNGDK TEPQKLQGGE TC

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


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Created and Maintained by: Michael Riffle