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View Structure Prediction Details

Protein: gi|42572895
Organism: Arabidopsis thaliana
Length: 620 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|42572895.

Description E-value Query
Range
Subject
Range
gi|114681146 - gi|114681146|ref|XP_001140896.1| PREDICTED: Sec23 (S. cerevisiae) homolog B isoform 4 [Pan troglodyt...
769.0 [0..1] [604..1]

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Predicted Domain #1
Region A:
Residues: [1-620]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAEMADKAKV EEMDWEGIDG VRMTWNLWPR TKVEASKCVI PLAASISPIR RHPLILDLPY  60
   61 APLDCKTCKA LLNAFARVDF AAMNWVCPFC YHRNHFPSHY HSISEINLPG ELYPQYTTVE 120
  121 YTLPPDPSRV PPPPVFVFVL DTCMIEEELG YAKSALKQAI GLLPENALVG FVSFGTQAHV 180
  181 HELGFSEMSK VFVFKGNKEV TKDQILDQLG LGSSSRRAPT SGFSKGAQNG FQSSGVDRFL 240
  241 LPASECEYTL DLLLDELQSD QWPVQPGHRP QRCTGVALSV AAGLLGACLP GTGARIVALV 300
  301 GGPCTEGPGT IISKDLSDPV RSHKDLDKDA APYYKKAVKF YDSIAKQLVA QGHVLDLFAS 360
  361 ALDQVGVAEM KVAVESTGGL VVLSESFGHS VFKDSFKRMF EDGEHSLGLC FNGTLEINCS 420
  421 KDIKIQGVIG PCSSLEKKGP NVADTVIGEG NTSAWKLCGL DKSTCLTVFF DLSSTGSTAP 480
  481 GALNQQLYLQ FITRYQNSEG KSLARVTTLT RQWVDTAVST ENLVQGFDQE TAAVVMARLT 540
  541 SLKMETEEGF DATRWLDRTL IRLCSKFGEY RKDDPTSFTL KPYLTLFPQF MFNLRRSQFV 600
  601 QDLRQLCWMW LPLQLTRFFY 

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 1000.0
Match: 2nupA
Description: No description for 2nupA was found.

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle