YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

View Structure Prediction Details

Protein: gi|119360137, gi...
Organism: Arabidopsis thaliana
Length: 387 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



[What does the above image mean?]


[Show Ginzu Version Information]


Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|119360137, gi....

Description E-value Query
Range
Subject
Range
gi|4455296, gi|7... - pir||T05236 hypothetical protein F18A5.60 - Arabidopsis thaliana, gi|7268071|emb|CAB78409.1| hypothe...
385.0 [0..1] [387..1]

Back

Predicted Domain #1
Region A:
Residues: [1-256]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MASSSLPLSL PFPLRSLTST TRSLPFQCSP LFFSIPSSIV CFSTQNPDRE EVRWLREEQR  60
   61 WIREEQRWIR EEQRWIRERE SLLQEISDLQ LRIQSLESRN SQLGNSIPDT ISNIAALLQV 120
  121 LKEKNRISES GLSATPMVLE STREQIVEEV EEEEKRVIIA EEKVRVSEPV KKIKRRILKV 180
  181 GSEGDDVQAL QEALLKLGFY SGEEDMEFSS FSSGTASAVK TWQASLGVRE DGVMTAELLQ 240
  241 RLFMDEDVET DKDEAS

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 5.522879
Match: 2bgxA
Description: No description for 2bgxA was found.

Predicted functions:

Term Confidence Notes
catalytic activity 0.09849742457731 bayes_pls_golite062009

Predicted Domain #2
Region A:
Residues: [257-387]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 TMKKEEAGNG AVFTSVTQVP EKKQSIVKDQ SDREVDVTQN RVFLLGENRW EDPSRLIGRN  60
   61 KPVDRSESTN TKTRCITCRG EGRLMCLECD GTGEPNIEPQ FMEWVGEDTK CPYCEGLGYT 120
  121 VCDVCDGKKN L

[Run NCBI BLAST on this sequence.]

Detection Method: FFAS03
Confidence: 3.35
Match: 2cttA
Description: Solution structure of zinc finger domain from human DnaJ subfamily A menber 3
Matching Structure (courtesy of the PDB):

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle