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View Structure Prediction Details

Protein: NDB1_ARATH
Organism: Arabidopsis thaliana
Length: 571 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for NDB1_ARATH.

Description E-value Query
Range
Subject
Range
gi|21554177 - gi|21554177|gb|AAM63256.1| putative NADH dehydrogenase [Arabidopsis thaliana]
306.0 [0..1] [571..1]

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Predicted Domain #1
Region A:
Residues: [1-571]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTLLSSLGRA SRSAPLASKL LLLGTLSGGS IVAYADANEE ANKKEEHKKK KVVVLGTGWA  60
   61 GISFLKDLDI TSYDVQVVSP QNYFAFTPLL PSVTCGTVEA RSIVESVRNI TKKKNGEIEL 120
  121 WEADCFKIDH VNQKVHCRPV FKDDPEASQE FSLGYDYLIV AVGAQVNTFG TPGVLENCHF 180
  181 LKEVEDAQRI RRGVIDCFEK AILPGLTEEQ RRRKLHFVIV GGGPTGVEFA AELHDFIIED 240
  241 ITKIYPSVKE LVKITLIQSG DHILNTFDER ISSFAEQKFT RDGIDVQTGM RVMSVTDKDI 300
  301 TVKVKSSGEL VSIPHGLILW STGVGTRPVI SDFMEQVGQG GRRAVATNEW LQVTGCENVY 360
  361 AVGDCASIAQ RKILGDIANI FKAADADNSG TLTMEELEGV VDDIIVRYPQ VELYLKSKHM 420
  421 RHINDLLADS EGNARKEVDI EAFKLALSEA DSQMKTLPAT AQVAAQQGAY LAKCFNRMEQ 480
  481 CKELPEGPKR FRTGGHHQFR PFQYKHFGQF APLGGDQAAA ELPGDWVSAG KSAQWLWYSV 540
  541 YASKQVSWRT RALVVSDWTR RYIFGRDSSR I

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 70.221849
Match: 1zmcA
Description: Crystal Structure of Human dihydrolipoamide dehydrogenase complexed to NAD+
Matching Structure (courtesy of the PDB):

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle