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View Structure Prediction Details

Protein: gi|15236600
Organism: Arabidopsis thaliana
Length: 256 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|15236600.

Description E-value Query
Range
Subject
Range
gi|21593530 - gi|21593530|gb|AAM65497.1| unknown [Arabidopsis thaliana]
257.0 [0..1] [256..1]
gi|83853823 - gi|83853823|gb|ABC47856.1| aromatic-rich family protein [Glycine max]
222.0 [0..1] [256..1]
gi|34875875, gi|... - gi|57528275|ref|NP_001009671.1| coenzyme Q10 homolog B [Rattus norvegicus], gi|56972093|gb|AAH88273....
215.0 [0..14] [249..2]
gi|74223038, gi|... - gi|89337274|ref|NP_001034799.1| coenzyme Q10 homolog B isoform 1 [Mus musculus], gi|74223038|dbj|BAE...
212.0 [0..14] [249..2]
gi|114582370 - gi|114582370|ref|XP_001168795.1| PREDICTED: hypothetical protein isoform 1 [Pan troglodytes]
210.0 [0..15] [249..1]
COQ10B - coenzyme Q10 homolog B (S. cerevisiae)
210.0 [0..15] [249..1]
CQ10B_PONPY - Protein COQ10 B, mitochondrial precursor - Pongo pygmaeus (Orangutan)
CQ10B_PONAB - Coenzyme Q-binding protein COQ10 homolog B, mitochondrial OS=Pongo abelii GN=COQ10B PE=2 SV=1
209.0 [0..15] [249..1]

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Predicted Domain #1
Region A:
Residues: [1-95]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPPFMSGLRA VSSLLSCRNA ISRKLVSRSG IPRGSFVSDQ IRRFGSLSGV ERCSSNWLMS  60
   61 NDDARVSFRR LPGSVSLLQR RHFLGCGDGE EGGGE

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [96-256]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 LSKIYEERRV LGYTPEQMFN VVAAVDLYHG FVPWCQRSEV LKEYPDGSFD AELEIGFKFL  60
   61 VESYISHVES ERPKWIKTTA RDTGLFDHLI NLWQFKPGPI PGTCDLHFHV DFKFNSPLYR 120
  121 QVASMFFKEV ASRLVGAFSD RCRLVYGPGV RVDENAYEQR A

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 28.39794
Match: 1t17A
Description: Solution Structure of the 18 kDa Protein CC1736 from Caulobacter crescentus: The Northeast Structural Genomics Consortium Target CcR19
Matching Structure (courtesy of the PDB):

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle