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View Structure Prediction Details

Protein: gi|133778902, gi...
Organism: Arabidopsis thaliana
Length: 478 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|133778902, gi....

Description E-value Query
Range
Subject
Range
gi|46107656, gi|... - gi|46107656|ref|XP_380887.1| hypothetical protein FG00711.1 [Gibberella zeae PH-1], gi|42547814|gb|E...
272.0 [0..2] [438..1410]

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Predicted Domain #1
Region A:
Residues: [1-478]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MADDESRTIL LEKNEDCPGC IIDRTKQQQR GVPYLHLSFI WLVSLCTALP ISSLFPYIYF  60
   61 MIRDFHIAKQ EEDIGFYAGF VGSSFMIGRA LTSIFWGKLA DRYGRKPIIL IGTFSVIIFN 120
  121 TLFGLSTSFW LAISVRFLLG CFNCLLGVIR AYASEVVSEE YNALSLSVVS TSRGIGLILG 180
  181 PAIGGYLAQP AEKYPNIFSQ SSVFGRFPYF LPSLVISVYA TAVLIACWWL PETLHTRCRI 240
  241 AQGRLNPTEL NDDESRGGGL DEQKIINKPS LLRNRPLMAI IIVYCVFSLQ EIAYNEIFSL 300
  301 WAVSDRSYGG LSFSSQDVGE VLAISGLGLL VFQLLVYPPL EKSVGLLAVI RLSAVLLIPL 360
  361 LSCYPYIALL SGVTLHLVIN CASIIKNALS ISLVTGLFIM LNKAVPQNQR GAANGISMTA 420
  421 MSVFKSFGPA GGGVLFSWAQ KRQDATFLPG DEMVFLVLNL VQLVGLILTF IPYISQIQ

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 22.09691
Match: 1pw4A
Description: Crystal Structure of the Glycerol-3-Phosphate Transporter from E.Coli
Matching Structure (courtesy of the PDB):

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle