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View Structure Prediction Details

Protein: Y3330_ARATH
Organism: Arabidopsis thaliana
Length: 743 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for Y3330_ARATH.

Description E-value Query
Range
Subject
Range
gi|6714410 - gi|6714410|gb|AAF26098.1|AC012328_1 unknown protein [Arabidopsis thaliana]
717.0 [0..1] [727..1]

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Predicted Domain #1
Region A:
Residues: [1-392]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MESIGDDDEL RSKTVSLPRR ISFTILLLLL LISLSTRVSG SLDKSGRRVI EARTGQDLIW  60
   61 VVQLSDLHFS VHHPERAIDF KNIVGPALAL INPSLVLITG DLTDGKSKDM LTMKLNEDEW 120
  121 LEYESVMQDV VKRSGLNKSI FYDLRGNHDN FGVPSVGSSV DFFSKYSING QMGRKGNVNT 180
  181 ITVETSERKH LFVGIDTTMH IGLRGPTNLF GHPTDELLSS LDSHLSQWDN QSAKPVAKIS 240
  241 FGHFPLSFTA LSHSQKSLKD VFLKHSISAY LCGHLHSRFG KNLKRHHHSG GISLSDNDLF 300
  301 QLNMRQSGAE STSNCSFGAL PAAEFWEWEM GDWRKNRAMR IMAIDRGHVS YVDLDFKSKP 360
  361 QKTIILPTFP LDSRFMSTSF ARHKYECQHM IS

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 26.30103
Match: 1warA
Description: Recombinant Human Purple Acid Phosphatase expressed in Pichia Pastoris
Matching Structure (courtesy of the PDB):

Predicted Domain #2
Region A:
Residues: [393-581]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 SSYDAIRAIV FSHSLVVEVV ARVYDSSPGF DNLVMEAPMR KHGGDSSSSG ATFFSLPWNY  60
   61 RAFEDPLPDR FWLQIEVTDI KGRLTLSEMR PFSINGLSSK VSWTWNEFRV MGCQWAALYY 120
  121 PILWPALYSL FLVFLIPKCI IIVFKKQYTL KKFIAKKGPI TLVLWILQDL CRMPVVWFGY 180
  181 MAYLFYLIF

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #3
Region A:
Residues: [582-637]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 FPWFSGEVFA DSGDRAYMTI MGWVVTSSGA DRKHEYIGQP DVMVVVIPHV VFVVIP

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #4
Region A:
Residues: [638-743]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 SVLVVCCLVA EREIYKDHIR TVSGKKEDDH DRGRKKRSQR RSLLFSNRRL FRKSVLLASL  60
   61 ALYWKHFKNC WALGRAYEMN VVHFPGYSLV VPLLLLYVIC KTHKVP

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle