YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

View Structure Prediction Details

Protein: gi|30683814, gi|...
Organism: Arabidopsis thaliana
Length: 1137 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



[What does the above image mean?]


[Show Ginzu Version Information]


Top Sequence Alignment Hits

No multiple sequence alignment data found for gi|30683814, gi|....

Predicted Domain #1
Region A:
Residues: [1-194]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSSLSRELVF LILQFLDEEK FKDTVHRLEK ESGFFFNMRY FEDSVTAGEW DDVEKYLSGF  60
   61 TKVDDNRYSM KIFFEIRKQK YLEALDKKDH AKAVDILVKE LKVFSTFNEE LFKEITMLLT 120
  121 LTNFRENEQL SKYGDTKSAR GIMLGELKKL IEANPLFRDK LQFPSLKNSR LRTLINQSLN 180
  181 WQHQLCKNPR PNPD

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 3.69897
Match: 2j49A
Description: No description for 2j49A was found.

Predicted Domain #2
Region A:
Residues: [195-301]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 IKTLFVDHTC GHPNGAHTPS PTTNHLMGSV PKVGGFPPLG AHGPFQPTPA PLTTSLAGWM  60
   61 PNPSVQHPTV SAGPIGLGAP NSAVSMLKRE RPRSPPTNSL SMDYQTA

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #3
Region A:
Residues: [302-387]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 DSESVLKRPR PFGISDGVNN LPVNVLPVTY PGQSHAHATY STDDLPKNVS RILSQGSAIK  60
   61 SMDFHPVQQT MLLVGTNLGD IAIWEV

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 39.30103
Match: 2hesX
Description: No description for 2hesX was found.

Predicted Domain #4
Region A:
Residues: [388-963]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 GSREKLVSRS FKVWDLATCT VNLQASLASE YTAAVNRVVW SPDGGLLGVA YSKHIVHIYS  60
   61 YHGGEDLRNH LEIDAHAGNV NDLAFSQPNQ QLCVVTCGED KTIKVWDAVT GNKLHTFEGH 120
  121 EAPVYSVCPH QKENIQFIFS TAVDGKIKAW LYDNMGSRVD YDAPGRSCTS MAYCADGTRL 180
  181 FSCGTSKEGE SFIVEWNESE GAVKRTYLGL GKRSVGVVQF DTMKNKFLVA GDEFQVKFWD 240
  241 MDSVDLLSST AAEGGLPSSP CLRINKEGTL LAVSTTDNGI KILANAEGSR ILHSMANRGL 300
  301 DSSRAPPGSV AKGPIVGTFG TPNSSTGMSL SMGERSGPVA SVTGLNGDNR SLPDVKPRIA 360
  361 DDAEKSKTWK LTEISERSQL RTLRLPDTLL PARVVKLIYT NSGGAILALA ENAAHKLWKW 420
  421 QKSERNLLGK ANSNVPPQLW QPSSGVLMTN DTREGNKEDV VPCFALSKND SYVMSASGGK 480
  481 ISLFNMMTFK TMTTFMAPPP AATSLAFHPQ DNNIIAIGMD DSSIQIYNVR VDEVKSKLKG 540
  541 HQKRVTGLAF SNVLNVLVSS GADSQLCVWS MDGWEK

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 74.09691
Match: 1nr0A
Description: Actin interacting protein 1
Matching Structure (courtesy of the PDB):

Predicted Domain #5
Region A:
Residues: [964-1137]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 QASKQIQIPS GHSPNPLAHT RVQFHQDQIH VLVVHASQLA IYEAPKLENM KQWIPKESSG  60
   61 SVTDAVYSCD SQSIYAAFDD GSVSILTATT LQLKCRIGPN SYLPSNPSSR VYPATVAAHP 120
  121 SEPNQFAVGL TDGGVHVIEP PGPEGKWGIS APPENGAGPS VSSAPGSDQQ PSDS

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 68.522879
Match: 2ovpB
Description: No description for 2ovpB was found.

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle