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View Structure Prediction Details

Protein: ROGF4_ARATH
Organism: Arabidopsis thaliana
Length: 463 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for ROGF4_ARATH.

Description E-value Query
Range
Subject
Range
gi|3386605, gi|7... - pir||T02458 hypothetical protein At2g45890 [imported] - Arabidopsis thaliana, gi|3386605|gb|AAC28535...
708.0 [0..1] [463..1]
gi|125572637, gi... - gi|56784047|dbj|BAD82675.1| hypothetical protein [Oryza sativa Japonica Group], gi|125572637|gb|EAZ1...
675.0 [0..49] [462..34]
gi|116311123, gi... - gi|125549319|gb|EAY95141.1| hypothetical protein OsI_16959 [Oryza sativa Indica Group], gi|116311123...
632.0 [0..2] [460..36]

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Predicted Domain #1
Region A:
Residues: [1-77]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MESSSNSDQN EGTPTSSVSS PYRRTYSDIS GLSHRFDVQS FYNRPSNTNA VVLSGHEEDV  60
   61 SEDAEEPKDD VVNDVHG

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [78-463]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 DGDEEDSDID SAEDAELEMM RERFAKLLLG EDMSGSGKGV CTAVTVSNSI TNLYATVFGQ  60
   61 SLRLQPLSTE KKDLWKREMN CFMSICDYIV EVIPRSLGTN VEITETKLRS DILMSLPALR 120
  121 KLDNMLMEIL DSFTENEFWY VERGSSSMNS GGGGRDSGTF RKVVVQRKDE KWWLPVPCVP 180
  181 AEGLSEEERK HLRHKRDCAS QIHKAALAIN DSTLNDMDIP DSYLTTLPKS GKASVGDVIY 240
  241 KQLCTAEKFY PDQLLDILKI TSEHEALELA DKVEASLVTW RRKTGGLTHS KSSWDMMKDI 300
  301 SGDADRGNDK NHILAARARS LLFCLKQRYP ELSQTSLDIC KIQFNRDVGK AVLESYSRVL 360
  361 EGLAYNVVSW IDDVLYVDRT VRNRDD

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 171.0
Match: 2ntxA
Description: No description for 2ntxA was found.

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle