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View Structure Prediction Details

Protein: gi|110737320, gi...
Organism: Arabidopsis thaliana
Length: 440 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|110737320, gi....

Description E-value Query
Range
Subject
Range
gi|68373624 - gi|68373624|ref|XP_692242.1| PREDICTED: similar to Cationic amino acid transporter 3 (CAT-3) (Solute...
226.0 [0..12] [407..965]

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Predicted Domain #1
Region A:
Residues: [1-440]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSPAIKAPLL PNQEPSSSSS ENHGSFAGAV FNISTSIVGA GIMAIPAAFK VLGVIPSLSI  60
   61 IVIIAWLSNV SAGFLMKSSL AGESTTYAGV MKESFGKSGA VAVTVVTMVV TFGSMIIFSI 120
  121 IIGDVISGNE KDGIIHLGLL QEWFGSHWWN TRFFGLLFIF VFLFLPLVLC RRVERLAFSS 180
  181 AISFLLALLF VVISSVLAII ALVQGKTKPP RLFPELNDGG LSFFSLFTAS PVIVTAFTFH 240
  241 FNVHPVAFEL KDPLNVLSAT RISVILCATI YSATGLFCYL LFGDSTMTDV LMNFDQSTSS 300
  301 SVGSLLNDIV RLSYAIHLML VFPLLNFSLR ANLDELLFPM KLSLVEDNKR FFALTFPLLI 360
  361 SCFLGAIAIP DIWYFFQFLG STSTVSIAFI FPAAIVLRNV NGFSTLREKI VASVMLVLAV 420
  421 ATSIIAISTN IYTFTATEET 

[Run NCBI BLAST on this sequence.]

Detection Method: FFAS03
Confidence: 1.67
Match: 2a65A
Description: Crystal structure of LEUTAA, a bacterial homolog of Na+/Cl--dependent neurotransmitter transporters
Matching Structure (courtesy of the PDB):

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle