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View Structure Prediction Details

Protein: CSLB1_ARATH
Organism: Arabidopsis thaliana
Length: 757 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CSLB1_ARATH.

Description E-value Query
Range
Subject
Range
gi|9622882, gi|1... - gi|9622882|gb|AAF89965.1|AF200529_1 cellulose synthase-5 [Zea mays], gi|162460565|ref|NP_001104955.1...
690.0 [0..1] [757..250]

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Predicted Domain #1
Region A:
Residues: [1-77]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MADSSFSLPP LCERISYTNY FLRAVYLTVL GLFFSLLLHR IRHTSEYDNV WLVAFFCESC  60
   61 FFLVCLLITC LKWSPAD

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [78-516]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 TKPFPDRLDE RVHDLPSVDM FVPTADPVRE PPIMVVDTVL SLLAVNYPAN KLACYVSDDG  60
   61 CSPLTYFSLK EASKFAKIWV PFCKKYNTRV RAPSRYFLKP ISVATEDYEF NRDWEKTKRE 120
  121 YEKLRRKVED ATGDSHMLDV EDDFEAFSNT KPNDHSTLVK VVWENKGGVG DEKEIPHIIY 180
  181 ISREKRPNYV HNQKCGAMNF LARVSGLMTN APYILNVDCD MYANDADVVR QAMCILLQES 240
  241 LNMKHCAFVQ FRQEFYDSST ELIVVLQSHL GRGIAGIQGP IYIGSGCVHT RRVMYGLSPD 300
  301 DFEVDGSLSS VATREFLVKD SLARRFGNSK EMMKSVVDAI QRNPNPQNIL TNSIEAAREV 360
  361 GHCQYEYQTS WGNTIGWLYD SVAEDLNTSI GIHSRGWTSS YISPDTPAFL GSMPAGVPEA 420
  421 LLQQRRWATG WIEILFNKQ

[Run NCBI BLAST on this sequence.]

Detection Method: FFAS03
Confidence: 2.38
Match: 2d7iA
Description: No description for 2d7iA was found.

Predicted Domain #3
Region A:
Residues: [517-757]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 SPLRGLFSKK IRFRQRLAYL CIITCLRSIP ELIYCLLPAY CLLHNSTLFP KGLYLGITVT  60
   61 LVGIHCLYTL WEFMSLGYSV QSWLVSQSVW RIVATSSWLF SIFDITLKLL GISETVFIIT 120
  121 KKTVAGTKSA LGSGPSQGED VGPNSDLFKF EFDGSLCFLP GTFIVLVNIA ALAVFSVGLQ 180
  181 RSSYSHEGGG SGLAEACGCV LVMMLFLPFL MGLFKKGKYG TPLSTLSIAG FLAVLFVVFS 240
  241 V

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle