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View Structure Prediction Details

Protein: RBL1_ARATH
Organism: Arabidopsis thaliana
Length: 389 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for RBL1_ARATH.

Description E-value Query
Range
Subject
Range
RBL4_ARATH - RHOMBOID-like protein 4 OS=Arabidopsis thaliana GN=RBL4 PE=2 SV=1
293.0 [0..37] [389..47]

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Predicted Domain #1
Region A:
Residues: [1-76]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MARDRREGLE IKVVNPPAAA TNNVAVETSP ATATRRRRQQ QRASFAEFRP FKLWFPWLVP  60
   61 AIVVANIALF AISMFI

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [77-280]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 NNCPKNSAYC LARFLGRFAF QPMKENPLLG PSSLTLEKMG ALDVSMVVHK HEVWRLFTCI  60
   61 WLHAGVFHVL ANMLSLIFIG IRLEQEFGFV RIGLLYMISG FGGSLLSSLF NRAGISVGAS 120
  121 GALFGLLGAM LSELLTNWTI YANKFAALLT LIFIIAINLA VGILPHVDNF AHLGGFTSGF 180
  181 LLGFVFLIRP QYGYFNQRNN PRGY

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 20.522879
Match: 2ic8A
Description: No description for 2ic8A was found.

Predicted Domain #3
Region A:
Residues: [281-389]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 AAPSAKSKHK PYQYVLWITS LVLLIAGYTA GLVVLLRGTD LNKHCSWCHY LSCIPTSLWS  60
   61 CKSQNVYCES SQIGQQMNLT CITNGKTEMY KLSNDIPSRI QQLCSQLCR

[Run NCBI BLAST on this sequence.]

Detection Method: FFAS03
Confidence: 1.01
Match: 1j0pA
Description: Three dimensional Structure of the Y43L mutant of Tetraheme Cytochrome c3 from Desulfovibrio vulgaris Miyazaki F
Matching Structure (courtesy of the PDB):

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle