YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|186503523, gi...
Organism:	Arabidopsis thaliana
Length:	506 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|186503523, gi....

Description	E-value	Query Range	Subject Range
gi\|20197675, gi\|... - gi\|31711918\|gb\|AAP68315.1\| At2g27350 [Arabidopsis thaliana], gi\|30683489\|ref\|NP_850099.1\| OTU-like c...	401.0	[0..1]	[506..1]
gi\|47208696 - gi\|47208696\|emb\|CAF89993.1\| unnamed protein product [Tetraodon nigroviridis]	288.0	[0..72]	[451..641]
gi\|116309398, gi... - gi\|125548226\|gb\|EAY94048.1\| hypothetical protein OsI_15827 [Oryza sativa Indica Group], gi\|116309398...	268.0	[0..129]	[506..165]
gi\|38346330, gi\|... - gi\|50924105\|ref\|XP_472413.1\| OJ000126_13.12 [Oryza sativa (japonica cultivar-group)], gi\|38346330\|em...	268.0	[0..129]	[506..165]
gi\|74207900 - gi\|74207900\|dbj\|BAE29078.1\| unnamed protein product [Mus musculus]	258.0	[0..110]	[456..49]
gi\|82414780, gi\|... - gi\|82734233\|ref\|NP_001032585.1\| OTU domain containing 5 [Rattus norvegicus], gi\|82414780\|gb\|AAI10055...	258.0	[0..110]	[456..49]
gi\|57111761 - gi\|57111761\|ref\|XP_538031.1\| PREDICTED: similar to CG6091-PA, isoform A isoform 1 [Canis familiaris]	257.0	[0..145]	[456..143]
OTU5B_XENLA - OTU domain-containing protein 5-B OS=Xenopus laevis GN=otud5-b PE=2 SV=1	256.0	[0..71]	[456..2]

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Predicted Domain #1

Region A:
Residues: [1-171]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTRILVQRGS SGSSSNSSRP SSSSSSSSGS ETQINNNIPV PPVTIDEEIT DEKQEEVTVV  60
   61 EKAECSDAKD VAVDSDEPAD REDDEGLVVA ENVHVQSEGI DCDSPVSGGS NSDSPPVPAP 120
  121 PPKPSSTVNP GSNRSVLGSF GALRIGPTRR AAGPRSLVSS RSSPTGSHPS S

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [172-421]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 PRSHSENEGY NSSDEHMPCY VPSHPGSGLE REHQFEAEIR YSKGFEIRRM LEDGNCLFRA  60
   61 VADQVYGDSE AYDLARQMCM DYMEQERDHF SQFITEGFTS YLKRKRRDKV YGNNVEIQAL 120
  121 AEMYNRPIHI YSYSTEPINI FQGNYSTDTP PIRLSYHHGN HYNSLVDPHR LTVGAGLGFS 180
  181 SLSGRHVDKE QVKAAIKAQQ EHQIDNALLA EGRFYSDLEL TEKEIERSVM EASRAEYLME 240
  241 WSKPRIGPKE

[Run NCBI BLAST on this sequence.]

Detection Method:	FFAS03
Confidence:	2.77
Match:	1tffA
Description:	Structure of Otubain-2
Matching Structure (courtesy of the PDB):

Predicted Domain #3

Region A:
Residues: [422-506]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 SSTSNAETSS SGATGPSGSD SKPAEAVKEK TVLSSSIEMV LSMGFSYAQA MEAYSIFGDD  60
   61 VDSMVCYVLE TSCGGNNRRK GKATE

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits