YRC Public Data Repository - Protein Structure Prediction

Protein:	RS8_GEOSE
Organism:	Geobacillus stearothermophilus
Length:	131 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for RS8_GEOSE.

Description	E-value	Query Range	Subject Range
gi\|88704361, gi\|... - gi\|88704361\|ref\|ZP_01102075.1\| 30S ribosomal protein S8 [gamma proteobacterium KT 71], gi\|88701412\|g...	185.0	[0..1]	[130..1]
RS8_ACIAC - 30S ribosomal protein S8 OS=Acidovorax citrulli (strain AAC00-1) GN=rpsH PE=3 SV=1	185.0	[0..1]	[130..1]
RS8_THIDA - 30S ribosomal protein S8 OS=Thiobacillus denitrificans (strain ATCC 25259) GN=rpsH PE=3 SV=1	185.0	[0..1]	[130..1]
RS8_BORA1 - 30S ribosomal protein S8 OS=Bordetella avium (strain 197N) GN=rpsH PE=3 SV=1	183.0	[0..1]	[130..1]
gi\|83748163, gi\|... - gi\|83748163\|ref\|ZP_00945190.1\| SSU ribosomal protein S8P [Ralstonia solanacearum UW551], gi\|83725131... gi\|207721883, gi... - gi\|207721883\|ref\|YP_002252321.1\| 30S ribosomal protein S8 [Ralstonia solanacearum MolK2], gi\|2065870...	183.0	[0..1]	[130..1]
RS8_CUPTR - 30S ribosomal protein S8 OS=Cupriavidus taiwanensis (strain R1 / LMG 19424) GN=rpsH PE=3 SV=1 RS8_CUPTR - 30S ribosomal protein S8 OS=Cupriavidus taiwanensis (strain DSM 17343 / BCRC 17206 / CIP 107171 / LM... RS8_CUPPJ - 30S ribosomal protein S8 OS=Cupriavidus pinatubonensis (strain JMP 134 / LMG 1197) GN=rpsH PE=3 SV=1 RS8_CUPNH - 30S ribosomal protein S8 OS=Cupriavidus necator (strain ATCC 17699 / H16 / DSM 428 / Stanier 337) GN...	183.0	[0..1]	[130..1]
gi\|167740537 - gi\|167740537\|ref\|ZP_02413311.1\| 30S ribosomal protein S8 [Burkholderia pseudomallei 14] gi\|167620723 - gi\|167620723\|ref\|ZP_02389354.1\| 30S ribosomal protein S8 [Burkholderia thailandensis Bt4] gi\|167826139 - gi\|167826139\|ref\|ZP_02457610.1\| 30S ribosomal protein S8 [Burkholderia pseudomallei 9] gi\|167817742 - gi\|167817742\|ref\|ZP_02449422.1\| 30S ribosomal protein S8 [Burkholderia pseudomallei 91] RS8_BURPS - 30S ribosomal protein S8 OS=Burkholderia pseudomallei (strain K96243) GN=rpsH PE=3 SV=1 gi\|167564403 - gi\|167564403\|ref\|ZP_02357319.1\| 30S ribosomal protein S8 [Burkholderia oklahomensis EO147] RS8_BURMA - 30S ribosomal protein S8 OS=Burkholderia mallei (strain ATCC 23344) GN=rpsH PE=3 SV=1 gi\|243062582, gi... - gi\|243062582\|gb\|EES44768.1\| 30S ribosomal protein S8 [Burkholderia mallei PRL-20], gi\|167001685\|ref\|... gi\|167582609 - gi\|167582609\|ref\|ZP_02375483.1\| 30S ribosomal protein S8 [Burkholderia thailandensis TXDOH] gi\|167571549 - gi\|167571549\|ref\|ZP_02364423.1\| 30S ribosomal protein S8 [Burkholderia oklahomensis C6786] gi\|254261452, gi... - gi\|254261452\|ref\|ZP_04952506.1\| 30S ribosomal protein S8 [Burkholderia pseudomallei 1710a], gi\|25422... gi\|242316430, gi... - gi\|242316430\|ref\|ZP_04815446.1\| 30S ribosomal protein S8 [Burkholderia pseudomallei 1106b], gi\|24213... RS8_BURMA - 30S ribosomal protein S8 OS=Burkholderia mallei GN=rpsH PE=3 SV=1 RS8_BURPS - 30S ribosomal protein S8 OS=Burkholderia pseudomallei GN=rpsH PE=3 SV=1 gi\|194514247, gi... - gi\|254198554\|ref\|ZP_04904975.1\| 30S ribosomal protein S8 [Burkholderia pseudomallei S13], gi\|1945142... gi\|254190316, gi... - gi\|254190316\|ref\|ZP_04896824.1\| 30S ribosomal protein S8 [Burkholderia pseudomallei Pasteur 52237], ... gi\|217392191, gi... - gi\|217424735\|ref\|ZP_03456232.1\| 30S ribosomal protein S8 [Burkholderia pseudomallei 576], gi\|2173921... gi\|167920830 - gi\|167920830\|ref\|ZP_02507921.1\| 30S ribosomal protein S8 [Burkholderia pseudomallei BCC215] gi\|167912870 - gi\|167912870\|ref\|ZP_02499961.1\| 30S ribosomal protein S8 [Burkholderia pseudomallei 112] gi\|184210892, gi... - gi\|254180353\|ref\|ZP_04886951.1\| 30S ribosomal protein S8 [Burkholderia pseudomallei 1655], gi\|194505... gi\|194316552, gi... - gi\|254174662\|ref\|ZP_04881323.1\| 30S ribosomal protein S8 [Burkholderia mallei ATCC 10399], gi\|194316... gi\|167847651 - gi\|167847651\|ref\|ZP_02473159.1\| 30S ribosomal protein S8 [Burkholderia pseudomallei B7210] gi\|167838198 - gi\|167838198\|ref\|ZP_02465057.1\| 30S ribosomal protein S8 [Burkholderia thailandensis MSMB43] gi\|167904605 - gi\|167904605\|ref\|ZP_02491810.1\| 30S ribosomal protein S8 [Burkholderia pseudomallei NCTC 13177] gi\|167896223 - gi\|167896223\|ref\|ZP_02483625.1\| 30S ribosomal protein S8 [Burkholderia pseudomallei 7894] gi\|194528098, gi... - gi\|254206566\|ref\|ZP_04912917.1\| 30S ribosomal protein S8 [Burkholderia mallei JHU], gi\|194528098\|ref... gi\|194523109, gi... - gi\|254201225\|ref\|ZP_04907589.1\| 30S ribosomal protein S8 [Burkholderia mallei FMH], gi\|194523109\|ref... gi\|226198232, gi... - gi\|226198232\|ref\|ZP_03793803.1\| 30S ribosomal protein S8 [Burkholderia pseudomallei Pakistan 9], gi\|... gi\|134245378, gi... - gi\|134283183\|ref\|ZP_01769884.1\| 30S ribosomal protein S8 [Burkholderia pseudomallei 305], gi\|1342453... RS8_BURTA - 30S ribosomal protein S8 OS=Burkholderia thailandensis (strain E264 / ATCC 700388 / DSM 13276 / CIP ... RS8_BURP1 - 30S ribosomal protein S8 OS=Burkholderia pseudomallei (strain 1710b) GN=rpsH PE=3 SV=1 gi\|237814131, gi... - gi\|237814131\|ref\|YP_002898582.1\| ribosomal protein S8 [Burkholderia pseudomallei MSHR346], gi\|237506... gi\|238562968, gi... - gi\|238562968\|ref\|ZP_00439650.2\| 30S ribosomal protein S8 [Burkholderia mallei GB8 horse 4], gi\|23852... gi\|194575847, gi... - gi\|254357104\|ref\|ZP_04973378.1\| 30S ribosomal protein S8 [Burkholderia mallei 2002721280], gi\|194575... RS8_BURM9 - 30S ribosomal protein S8 OS=Burkholderia mallei (strain NCTC 10229) GN=rpsH PE=3 SV=1 RS8_BURMS - 30S ribosomal protein S8 OS=Burkholderia mallei (strain SAVP1) GN=rpsH PE=3 SV=1 RS8_BURM7 - 30S ribosomal protein S8 OS=Burkholderia mallei (strain NCTC 10247) GN=rpsH PE=3 SV=1 RS8_BURP6 - 30S ribosomal protein S8 OS=Burkholderia pseudomallei (strain 668) GN=rpsH PE=3 SV=1 RS8_BURP0 - 30S ribosomal protein S8 OS=Burkholderia pseudomallei (strain 1106a) GN=rpsH PE=3 SV=1	183.0	[0..1]	[130..1]
RS8_ACISJ - 30S ribosomal protein S8 OS=Acidovorax sp. (strain JS42) GN=rpsH PE=3 SV=1 RS8_ACIET - 30S ribosomal protein S8 OS=Acidovorax ebreus (strain TPSY) GN=rpsH PE=3 SV=1	183.0	[0..1]	[130..1]
RS8_METPP - 30S ribosomal protein S8 OS=Methylibium petroleiphilum (strain PM1) GN=rpsH PE=3 SV=1 gi\|47574133 - gi\|47574133\|ref\|ZP_00244169.1\| COG0096: Ribosomal protein S8 [Rubrivivax gelatinosus PM1]	183.0	[0..1]	[130..1]
RS8_SACD2 - 30S ribosomal protein S8 OS=Saccharophagus degradans (strain 2-40 / ATCC 43961 / DSM 17024) GN=rpsH ...	182.0	[0..1]	[130..1]

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Predicted Domain #1

Region A:
Residues: [1-131]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVMTDPIADM LTAIRNANMV RHEKLEVPAS KIKREIAEIL KREGFIRDYE YIEDNKQGIL  60
   61 RIFLKYGPNE RVITGLKRIS KPGLRVYVKA HEVPRVLNGL GIAILSTSQG VLTDKEARQK 120
  121 GTGGEIIAYV I

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	45.522879
Match:	1seiA
Description:	Ribosomal protein S8
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits