YRC Public Data Repository - Protein Structure Prediction

Protein:	RPL26B
Organism:	Saccharomyces cerevisiae
Length:	127 amino acids
Reference:	Malmström L, et al. (2007) Superfamily assignments for the yeast proteome through integration of structure prediction with the gene ontology. PLoS Biol 5(4): e76. doi:10.1371/journal.pbio.0050076

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for RPL26B.

Description	E-value	Query Range	Subject Range
gi\|50754890 - gi\|50754890\|ref\|XP_414531.1\| PREDICTED: similar to ribosomal protein L26; 60S ribosomal protein L26 ...	169.0	[0..3]	[127..134]
gi\|47216819 - gi\|47216819\|emb\|CAG10141.1\| unnamed protein product [Tetraodon nigroviridis]	155.0	[0..3]	[117..2]
gi\|70992323, gi\|... - gi\|70992323\|ref\|XP_751010.1\| ribosomal protein L26 [Aspergillus fumigatus Af293], gi\|66848643\|gb\|EAL... gi\|159124580 - gi\|159124580\|gb\|EDP49698.1\| ribosomal protein L26 [Aspergillus fumigatus A1163]	155.0	[0..1]	[127..134]
gi\|220948100 - gi\|220948100\|gb\|ACL86593.1\| RpL26-PA [synthetic construct] gi\|195496428, gi... - gi\|195496428\|ref\|XP_002095689.1\| GE19574 [Drosophila yakuba], gi\|195496407\|ref\|XP_002095681.1\| GE195... gi\|194197430, gi... - gi\|195591385\|ref\|XP_002085421.1\| GD14780 [Drosophila simulans], gi\|194197430\|gb\|EDX11006.1\| GD14780 ... gi\|194751754, gi... - gi\|194751754\|ref\|XP_001958190.1\| GF23649 [Drosophila ananassae], gi\|190625472\|gb\|EDV40996.1\| GF23649... gi\|194124515, gi... - gi\|195352261\|ref\|XP_002042631.1\| GM15002 [Drosophila sechellia], gi\|194124515\|gb\|EDW46558.1\| GM15002... RpL26-PA, FBpp03... - The gene Ribosomal protein L26 is referred to in FlyBase by the symbol Dmel\RpL26 (CG6846, FBgn00368...	149.0	[0..3]	[126..2]
gi\|21627827 - gi\|21627827\|emb\|CAD37159.1\| putative ribosomal protein [Aspergillus fumigatus]	147.0	[0..1]	[127..1]
gi\|109089651 - gi\|109089651\|ref\|XP_001089441.1\| PREDICTED: similar to 60S ribosomal protein L26 (Silica-induced gen...	146.0	[0..3]	[125..2]
gi\|28189641 - gi\|28189641\|dbj\|BAC56435.1\| similar to ribosomal protein L26 [Bos taurus]	145.0	[0..3]	[127..2]
gi\|125535782 - gi\|125535782\|gb\|EAY82270.1\| hypothetical protein OsI_37478 [Oryza sativa Indica Group] gi\|125578511, gi... - gi\|77553015\|gb\|ABA95811.1\| 60S ribosomal protein L26-1, putative, expressed [Oryza sativa (japonica ...	145.0	[0..3]	[126..2]
gi\|74220324 - gi\|74220324\|dbj\|BAE31338.1\| unnamed protein product [Mus musculus]	144.0	[0..3]	[127..2]
gi\|89036278, gi\|... - gi\|89036278\|ref\|XP_945420.1\| PREDICTED: similar to 60S ribosomal protein L26 (Silica-induced gene 20...	144.0	[0..3]	[127..2]

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Predicted Domain #1

Region A:
Residues: [1-127]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAKQSLDVSS DRRKARKAYF TAPSSERRVL LSAPLSKELR AQYGIKALPI RRDDEVLVVR  60
   61 GSKKGQEGKI SSVYRLKFAV QVDKVTKEKV NGASVPINLH PSKLVITKLH LDKDRKALIQ 120
  121 RKGGKLE

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	29.69897
Match:	1s1iU
Description:	Structure of the ribosomal 80S-eEF2-sordarin complex from yeast obtained by docking atomic models for RNA and protein components into a 11.7 A cryo-EM map. This file, 1S1I, Contains 60S subunit. The 40S Ribosomal Subunit Is In File 1S1H.
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits