YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|1311034, gi\|1...
Organism:	Escherichia coli
Length:	109 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|1311034, gi|1....

Description	E-value	Query Range	Subject Range
gi\|84693845, gi\|... - gi\|84714246\|ref\|ZP_01021711.1\| Chorismate mutase, gamma, beta and epsilon proteobacteria [Polaromona...	132.0	[0..1]	[107..1]
gi\|47575154 - gi\|47575154\|ref\|ZP_00245189.1\| COG0077: Prephenate dehydratase [Rubrivivax gelatinosus PM1] gi\|124260203, gi... - gi\|124267428\|ref\|YP_001021432.1\| prephenate dehydratase / chorismate mutase [Methylibium petroleiphi...	131.0	[0..4]	[107..10]
gi\|53758006, gi\|... - gi\|53804245\|ref\|YP_113875.1\| chorismate mutase/prephenate dehydratase [Methylococcus capsulatus str....	131.0	[0..1]	[108..1]
gi\|67908306, gi\|... - gi\|91787674\|ref\|YP_548626.1\| chorismate mutase / prephenate dehydratase [Polaromonas sp. JS666], gi\|...	131.0	[0..1]	[107..1]
gi\|110592959, gi... - gi\|121594807\|ref\|YP_986703.1\| chorismate mutase / prephenate dehydratase [Acidovorax sp. JS42], gi\|1... gi\|222110594, gi... - gi\|222110594\|ref\|YP_002552858.1\| chorismate mutase [Diaphorobacter sp. TPSY], gi\|221730038\|gb\|ACM328...	130.0	[0..2]	[107..11]
gi\|111619535, gi... - gi\|120611938\|ref\|YP_971616.1\| chorismate mutase [Acidovorax avenae subsp. citrulli AAC00-1], gi\|1205...	129.0	[0..2]	[107..6]
gi\|83647661, gi\|... - gi\|83647661\|ref\|YP_436096.1\| prephenate dehydratase [Hahella chejuensis KCTC 2396], gi\|83635704\|gb\|A...	128.0	[0..2]	[107..3]
gi\|110647721, gi... - gi\|110834610\|ref\|YP_693469.1\| P-protein, chorismate mutase/prephenate dehydratase [Alcanivorax borku...	127.0	[0..1]	[107..1]
PHEA_PSEST - P-protein OS=Pseudomonas stutzeri GN=pheA PE=3 SV=2	127.0	[0..1]	[107..1]
gi\|111612461, gi... - gi\|121610063\|ref\|YP_997870.1\| chorismate mutase [Verminephrobacter eiseniae EF01-2], gi\|121554703\|gb...	126.0	[0..2]	[107..5]

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Predicted Domain #1

Region A:
Residues: [1-109]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTSENPLLAL REKISALDEK LLALLAERRE LAVEVGKAKL LSHRPVRDID RERDLLERLI  60
   61 TLGKAHHLDA HYITRLFQLI IEDSVLTQQA LLQQHLNKIN PHSARIAFL

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	24.522879
Match:	1ecmA
Description:	Chorismate mutase domain of P-protein
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
catalytic activity	0.565003089788745	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: