YRC Public Data Repository

Run Information:

Bait Protein:	RPA135
Organism:	Saccharomyces cerevisiae
Publication:	Schneider DA, French SL, Osheim YN, Bailey AO, Vu L, Dodd J, Yates JR, Beyer AL, Nomura M. RNA polymerase II elongation factors Spt4p and Spt5p play roles in transcription elongation by RNA polymerase I and rRNA processing. Proc Natl Acad Sci U S A. 2006;103(34):12707-12.
Comments:	his-HA tag on RPA135
Raw Data:	Download DTASelect Filter text Download DTASelect TXT file

UNFILTERED Run Results: [filter] [View our MS interpretation guidelines.]
	Hit Protein	Protein Desc	Sequence Count	Spectrum Count	Sequence Coverage	NSAF	Mol. Wt.
[View Peptides]	RPC19	RNA polymerase subunit AC19, common to RNA polymerases I and III	11	30	94.4%	0.0302	16151
[View Peptides]	RPC40	RNA polymerase subunit AC40, common to RNA polymerase I and III	33	77	79.4%	0.0329	37687
[View Peptides]	RPB10	RNA polymerase subunit ABC10-beta, common to RNA polymerases I, II, and III	5	8	71.4%	0.0164	8278
[View Peptides]	RPB11	RNA polymerase II subunit B12.5; part of central core; similar to Rpc19p and bacterial alpha subunit	9	10	70.0%	0.0119	13616
[View Peptides]	SSB1	Cytoplasmic ATPase that is a ribosome-associated molecular chaperone, functions with J-protein partn...	51	78	69.0%	0.0182	66602
[View Peptides]	SSB2	Cytoplasmic ATPase that is a ribosome-associated molecular chaperone, functions with J-protein partn...	51	78	67.2%	0.0182	66595
[View Peptides]	RPA190	RNA polymerase I largest subunit A190	128	262	67.1%	0.0225	186431
[View Peptides]	RPA49	RNA polymerase I subunit A49	39	62	65.5%	0.0214	46651
[View Peptides]	RPB4	RNA polymerase II subunit B32; forms two subunit dissociable complex with Rpb7p; involved recruitmen...	12	22	65.2%	0.0142	25414
[View Peptides]	SSA2	ATP binding protein involved in protein folding and vacuolar import of proteins; member of heat shoc...	40	73	63.1%	0.0163	69470
[View Peptides]	RPA34	RNA polymerase I subunit A34.5	21	28	61.4%	0.0172	26875
[View Peptides]	SUP35	Translation termination factor eRF3; altered protein conformation creates the [PSI(+)] prion, a domi...	53	90	59.9%	0.0188	76551
[View Peptides]	RPA14	RNA polymerase I subunit A14	8	8	59.1%	0.00836	14585
[View Peptides]	RPB7	RNA polymerase II subunit B16; forms two subunit dissociable complex with Rpb4p; involved recruitmen...	5	6	58.5%	0.00502	19058
[View Peptides]	RPA12	RNA polymerase I subunit A12.2; contains two zinc binding domains, and the N terminal domain is resp...	7	39	57.6%	0.0446	13661
[View Peptides]	RPA135	RNA polymerase I second largest subunit A135	77	137	56.9%	0.0163	135742
[View Peptides]	SPT4	Protein involved in the regulating Pol I and Pol II transcription, pre-mRNA processing, kinetochore ...	6	11	54.9%	0.0154	11158
[View Peptides]	SSA1	ATPase involved in protein folding and nuclear localization signal (NLS)-directed nuclear transport;...	34	66	54.2%	0.0147	69768
[View Peptides]	DDR48	DNA damage-responsive protein, expression is increased in response to heat-shock stress or treatment...	12	16	54.0%	0.00532	46233
[View Peptides]	SPT5	Protein involved in regulating Pol I and Pol II transcription and pre-mRNA processing; forms a compl...	72	119	53.9%	0.016	115650
[View Peptides]	RPB2	RNA polymerase II second largest subunit B150, part of central core; similar to bacterial beta subun...	78	118	52.5%	0.0138	138751
[View Peptides]	RPO21	RNA polymerase II largest subunit B220, part of central core; phosphorylation of C-terminal heptapep...	79	121	52.2%	0.00999	191610
[View Peptides]	RPB3	RNA polymerase II third largest subunit B44, part of central core; similar to prokaryotic alpha subu...	14	25	49.1%	0.0112	35298
[View Peptides]	RPL30	Protein component of the large (60S) ribosomal subunit, has similarity to rat L30 ribosomal protein;...	5	6	48.6%	0.00818	11415
[View Peptides]	RPA43	RNA polymerase I subunit A43	17	40	48.5%	0.0176	36224
[View Peptides]	gi\|7463016\|pir\|\|...	lysyl endopeptidase (EC 3.4.21.50) - Lysobacter enzymogenes	10	18	45.7%	0.00957	27961
[View Peptides]	RPB5	RNA polymerase subunit ABC27, common to RNA polymerases I, II, and III; contacts DNA and affects tra...	13	36	45.6%	0.024	25079
[View Peptides]	ENO2	Enolase II, a phosphopyruvate hydratase that catalyzes the conversion of 2-phosphoglycerate to phosp...	12	16	45.5%	0.00524	46914
[View Peptides]	RPO26	RNA polymerase subunit ABC23, common to RNA polymerases I, II, and III; part of central core; simila...	5	14	45.2%	0.0129	17910
[View Peptides]	RPL27B	Protein component of the large (60S) ribosomal subunit, nearly identical to Rpl27Ap and has similari...	5	7	43.4%	0.00736	15505
[View Peptides]	RPL27A	Protein component of the large (60S) ribosomal subunit, nearly identical to Rpl27Bp and has similari...	5	7	43.4%	0.00736	15531
[View Peptides]	RPL33B	Ribosomal protein L37 of the large (60S) ribosomal subunit, nearly identical to Rpl33Ap and has simi...	3	3	42.1%	0.00401	12168
[View Peptides]	RPL33A	N-terminally acetylated ribosomal protein L37 of the large (60S) ribosomal subunit, nearly identical...	3	3	42.1%	0.00401	12154
[View Peptides]	YPR137C-A, YAR010C	Retrotransposon TYA Gag gene co-transcribed with TYB Pol; translated as TYA or TYA-TYB polyprotein; ...	12	20	40.5%	0.0065	49072
[View Peptides]	YDR261C-C	Retrotransposon TYA Gag gene co-transcribed with TYB Pol; in YDRCTY1-3 TYB is mutant and probably no...	12	20	40.5%	0.0065	49009
[View Peptides]	YDR365W-A, YPL25...	Retrotransposon TYA Gag gene co-transcribed with TYB Pol; translated as TYA or TYA-TYB polyprotein; ...	12	20	40.5%	0.0065	48953
[View Peptides]	YGR027W-A	Retrotransposon TYA Gag gene co-transcribed with TYB Pol; translated as TYA or TYA-TYB polyprotein; ...	12	20	40.5%	0.0065	49056
[View Peptides]	YDR365W-A, YPL25...	Retrotransposon TYA Gag gene co-transcribed with TYB Pol; translated as TYA or TYA-TYB polyprotein; ...	12	20	40.5%	0.0065	48953
[View Peptides]	SSE1	ATPase that is a component of the heat shock protein Hsp90 chaperone complex; binds unfolded protein...	21	27	39.5%	0.00557	77367
[View Peptides]	RPL4A	N-terminally acetylated protein component of the large (60S) ribosomal subunit, nearly identical to ...	10	10	39.0%	0.00395	39092
[View Peptides]	RPL4B	Protein component of the large (60S) ribosomal subunit, nearly identical to Rpl4Ap and has similarit...	10	10	39.0%	0.00395	39062
[View Peptides]	SSC1	Hsp70 family ATPase, constituent of the import motor component of the Translocase of the Inner Mitoc...	23	29	38.5%	0.00634	70628
[View Peptides]	RPL2A, RPL2B	Protein component of the large (60S) ribosomal subunit, identical to Rpl2Bp and has similarity to E....	11	15	38.2%	0.00845	27408
[View Peptides]	RPL2A, RPL2B	Protein component of the large (60S) ribosomal subunit, identical to Rpl2Bp and has similarity to E....	11	15	38.2%	0.00845	27408
[View Peptides]	ENO1	Enolase I, a phosphopyruvate hydratase that catalyzes the conversion of 2-phosphoglycerate to phosph...	10	14	38.0%	0.00458	46816
[View Peptides]	PIN3	Protein that induces appearance of [PIN+] prion when overproduced	4	6	36.7%	0.00399	23539
[View Peptides]	YDR210C-C	Retrotransposon TYA Gag gene co-transcribed with TYB Pol; translated as TYA or TYA-TYB polyprotein; ...	11	19	35.7%	0.00618	49187
[View Peptides]	YER159C-A, YDR31...	Retrotransposon TYA Gag gene co-transcribed with TYB Pol; translated as TYA or TYA-TYB polyprotein; ...	11	19	35.7%	0.00618	49129
[View Peptides]	YER159C-A, YDR31...	Retrotransposon TYA Gag gene co-transcribed with TYB Pol; translated as TYA or TYA-TYB polyprotein; ...	11	19	35.7%	0.00618	49129
[View Peptides]	YDR098C-A	Retrotransposon TYA Gag gene co-transcribed with TYB Pol; translated as TYA or TYA-TYB polyprotein; ...	11	19	35.7%	0.00618	49057
[View Peptides]	SNC2	Vesicle membrane receptor protein (v-SNARE) involved in the fusion between Golgi-derived secretory v...	2	2	35.7%	0.00249	12957
[View Peptides]	RPS17B	Ribosomal protein 51 (rp51) of the small (40s) subunit; nearly identical to Rps17Ap and has similari...	4	5	34.6%	0.00526	15803
[View Peptides]	RPS17A	Ribosomal protein 51 (rp51) of the small (40s) subunit; nearly identical to Rps17Bp and has similari...	4	5	34.6%	0.00526	15788
[View Peptides]	DEF1	RNAPII degradation factor, forms a complex with Rad26p in chromatin, enables ubiquitination and prot...	26	49	33.9%	0.0095	83973
[View Peptides]	RPL10	Protein component of the large (60S) ribosomal subunit, responsible for joining the 40S and 60S subu...	4	4	33.9%	0.00259	25361
[View Peptides]	PDC1	Major of three pyruvate decarboxylase isozymes, key enzyme in alcoholic fermentation, decarboxylates...	11	11	33.4%	0.0028	61495
[View Peptides]	MGE1	Mitochondrial matrix cochaperone, acts as a nucleotide release factor for Ssc1p in protein transloca...	3	3	33.3%	0.00188	26066
[View Peptides]	RIM1	Single-stranded DNA-binding protein essential for mitochondrial genome maintenance; involved in mito...	3	4	33.3%	0.00424	15386
[View Peptides]	YGR038C-A	Retrotransposon TYA Gag gene co-transcribed with TYB Pol; translated as TYA or TYA-TYB polyprotein; ...	10	17	33.0%	0.00553	49034
[View Peptides]	HHF1, HHF2	Histone H4, core histone protein required for chromatin assembly and chromosome function; one of two...	2	2	32.0%	0.00278	11368
[View Peptides]	HHF1, HHF2	Histone H4, core histone protein required for chromatin assembly and chromosome function; one of two...	2	2	32.0%	0.00278	11368
[View Peptides]	RPL1A, RPL1B	N-terminally acetylated protein component of the large (60S) ribosomal subunit, nearly identical to ...	5	6	31.8%	0.00396	24486
[View Peptides]	RPL1A, RPL1B	N-terminally acetylated protein component of the large (60S) ribosomal subunit, nearly identical to ...	5	6	31.8%	0.00396	24486
[View Peptides]	TDH3	Glyceraldehyde-3-phosphate dehydrogenase, isozyme 3, involved in glycolysis and gluconeogenesis; tet...	5	5	31.6%	0.00215	35747
[View Peptides]	RPL15A	Protein component of the large (60S) ribosomal subunit, nearly identical to Rpl15Bp and has similari...	6	9	31.4%	0.00631	24422
[View Peptides]	RPP2A	Ribosomal protein P2 alpha, a component of the ribosomal stalk, which is involved in the interaction...	4	4	31.1%	0.0054	10746
[View Peptides]	RPS8B, RPS8A	Protein component of the small (40S) ribosomal subunit; identical to Rps8Ap and has similarity to ra...	7	8	31.0%	0.00572	22490
[View Peptides]	RPS8B, RPS8A	Protein component of the small (40S) ribosomal subunit; identical to Rps8Ap and has similarity to ra...	7	8	31.0%	0.00572	22490
[View Peptides]	RPL12B, RPL12A	Protein component of the large (60S) ribosomal subunit, nearly identical to Rpl12Ap; rpl12a rpl12b d...	4	6	30.9%	0.0052	17823
[View Peptides]	RPL12B, RPL12A	Protein component of the large (60S) ribosomal subunit, nearly identical to Rpl12Ap; rpl12a rpl12b d...	4	6	30.9%	0.0052	17823
[View Peptides]	RPL8A	Ribosomal protein L4 of the large (60S) ribosomal subunit, nearly identical to Rpl8Bp and has simila...	7	8	30.5%	0.00447	28125
[View Peptides]	RPL8B	Ribosomal protein L4 of the large (60S) ribosomal subunit, nearly identical to Rpl8Ap and has simila...	8	10	30.5%	0.00559	28112
[View Peptides]	RPL28	Ribosomal protein of the large (60S) ribosomal subunit, has similarity to E. coli L15 and rat L27a r...	5	5	30.2%	0.0048	16722
[View Peptides]	RPL23B, RPL23A	Protein component of the large (60S) ribosomal subunit, identical to Rpl23Ap and has similarity to E...	4	5	29.9%	0.00522	14473
[View Peptides]	RPL23B, RPL23A	Protein component of the large (60S) ribosomal subunit, identical to Rpl23Ap and has similarity to E...	4	5	29.9%	0.00522	14473
[View Peptides]	YBR012W-A	Retrotransposon TYA Gag gene co-transcribed with TYB Pol; translated as TYA or TYA-TYB polyprotein; ...	10	18	29.3%	0.00585	49068
[View Peptides]	RPS0B	Protein component of the small (40S) ribosomal subunit, nearly identical to Rps0Ap; required for mat...	4	4	29.0%	0.00227	27962
[View Peptides]	ACT1	Actin, structural protein involved in cell polarization, endocytosis, and other cytoskeletal functio...	5	6	28.8%	0.00229	41690
[View Peptides]	HTA2	Histone H2A, core histone protein required for chromatin assembly and chromosome function; one of tw...	3	3	28.0%	0.00325	13989
[View Peptides]	HTA1	Histone H2A, core histone protein required for chromatin assembly and chromosome function; one of tw...	3	3	28.0%	0.00325	13989
[View Peptides]	RPL17B	Protein component of the large (60S) ribosomal subunit, nearly identical to Rpl17Ap and has similari...	5	6	27.7%	0.00467	20551
[View Peptides]	RPL17A	Protein component of the large (60S) ribosomal subunit, nearly identical to Rpl17Bp and has similari...	5	6	27.7%	0.00467	20549
[View Peptides]	RPS6A, RPS6B	Protein component of the small (40S) ribosomal subunit; identical to Rps6Bp and has similarity to ra...	6	7	27.1%	0.00424	26996
[View Peptides]	RPS6A, RPS6B	Protein component of the small (40S) ribosomal subunit; identical to Rps6Bp and has similarity to ra...	6	7	27.1%	0.00424	26996
[View Peptides]	RPL15B	Protein component of the large (60S) ribosomal subunit, nearly identical to Rpl15Ap and has similari...	5	8	26.5%	0.00561	24422
[View Peptides]	RPB8	RNA polymerase subunit ABC14.5, common to RNA polymerases I, II, and III	5	5	26.0%	0.0049	16511
[View Peptides]	gi\|2119236, gi\|4...	sp\|P35527\|K1CI_HUMAN Keratin, type I cytoskeletal 9 (Cytokeratin 9) (K9) (CK 9), gi\|545257\|gb\|AAC60...	10	13	24.8%	0.00299	61987
[View Peptides]	RPS9A	Protein component of the small (40S) ribosomal subunit; nearly identical to Rps9Bp and has similarit...	3	3	24.4%	0.00218	22443
[View Peptides]	KAR2	ATPase involved in protein import into the ER, also acts as a chaperone to mediate protein folding i...	9	9	24.0%	0.00189	74468
[View Peptides]	KAR2	ATPase involved in protein import into the ER, also acts as a chaperone to mediate protein folding i...	9	9	24.0%	0.00189	74468
[View Peptides]	RPL36A	N-terminally acetylated protein component of the large (60S) ribosomal subunit, nearly identical to ...	3	3	24.0%	0.00429	11124
[View Peptides]	RPL36B	Protein component of the large (60S) ribosomal subunit, nearly identical to Rpl36Ap and has similari...	3	3	24.0%	0.00429	11135
[View Peptides]	RPB9	RNA polymerase II subunit B12.6; contacts DNA; mutations affect transcription start site selection a...	2	2	23.8%	0.00235	14288
[View Peptides]	SEC17	Peripheral membrane protein required for vesicular transport between ER and Golgi, the 'priming' ste...	4	5	23.6%	0.00245	32803
[View Peptides]	RPS9B	Protein component of the small (40S) ribosomal subunit; nearly identical to Rps9Ap and has similarit...	3	3	23.6%	0.0022	22299
[View Peptides]	RPP0	Conserved ribosomal protein P0 similar to rat P0, human P0, and E. coli L10e; shown to be phosphoryl...	7	7	23.4%	0.00321	33717
[View Peptides]	YEL007W	Putative protein with sequence similarity to S. pombe gti1+ (gluconate transport inducer 1)	9	11	23.0%	0.00236	72534
[View Peptides]	LAT1	Dihydrolipoamide acetyltransferase component (E2) of pyruvate dehydrogenase complex, which catalyzes...	7	7	22.2%	0.00208	51818
[View Peptides]	HTB2	Histone H2B, core histone protein required for chromatin assembly and chromosome function; nearly id...	2	2	22.1%	0.00218	14237
[View Peptides]	HTB1	Histone H2B, core histone protein required for chromatin assembly and chromosome function; nearly id...	2	2	22.1%	0.00218	14252
[View Peptides]	TEF1, TEF2	Translational elongation factor EF-1 alpha; also encoded by TEF2; functions in the binding reaction ...	6	7	21.8%	0.00219	50033
[View Peptides]	TEF1, TEF2	Translational elongation factor EF-1 alpha; also encoded by TEF2; functions in the binding reaction ...	6	7	21.8%	0.00219	50033
[View Peptides]	RPS7A	Protein component of the small (40S) ribosomal subunit, nearly identical to Rps7Bp; interacts with K...	2	2	21.6%	0.00151	21622
[View Peptides]	RPS4B, RPS4A	Protein component of the small (40S) ribosomal subunit; identical to Rps4Ap and has similarity to ra...	4	5	21.5%	0.00274	29410
[View Peptides]	RPS4B, RPS4A	Protein component of the small (40S) ribosomal subunit; identical to Rps4Ap and has similarity to ra...	4	5	21.5%	0.00274	29410
[View Peptides]	RPL18A, RPL18B	Protein component of the large (60S) ribosomal subunit, identical to Rpl18Bp and has similarity to r...	3	3	21.5%	0.00231	20563
[View Peptides]	RPL18A, RPL18B	Protein component of the large (60S) ribosomal subunit, identical to Rpl18Bp and has similarity to r...	3	3	21.5%	0.00231	20563
[View Peptides]	RNQ1	[PIN(+)] prion, an infectious protein conformation that is generally an ordered protein aggregate	4	6	21.2%	0.00212	42580
[View Peptides]	SEC18	ATPase required for vesicular transport between ER and Golgi, the 'priming' step in homotypic vacuol...	9	9	21.1%	0.0017	84056
[View Peptides]	RPL25	Primary rRNA-binding ribosomal protein component of the large (60S) ribosomal subunit, has similarit...	3	3	21.1%	0.00302	15758
[View Peptides]	RPP1A	Ribosomal stalk protein P1 alpha, involved in the interaction between translational elongation facto...	2	2	20.8%	0.0027	10908
[View Peptides]	contaminant_NRL_...	owl\|\| Cha255 immunoglobulin fab' fragment (igg1-lambda) complex With...	2	3	20.7%	0.00202	22638
[View Peptides]	RPS24A, RPS24B	Protein component of the small (40S) ribosomal subunit; identical to Rps24Bp and has similarity to r...	2	2	20.0%	0.00212	15329
[View Peptides]	RPS24A, RPS24B	Protein component of the small (40S) ribosomal subunit; identical to Rps24Bp and has similarity to r...	2	2	20.0%	0.00212	15329
[View Peptides]	RPP2B	Ribosomal protein P2 beta, a component of the ribosomal stalk, which is involved in the interaction ...	2	2	20.0%	0.0026	11050
[View Peptides]	RPS0A	Protein component of the small (40S) ribosomal subunit, nearly identical to Rps0Bp; required for mat...	3	3	18.3%	0.0017	28024
[View Peptides]	YCL020W	Retrotransposon TYA Gag gene co-transcribed with TYB Pol; translated as TYA or TYA-TYB polyprotein; ...	6	10	18.0%	0.00327	49841
[View Peptides]	PIN4	Protein involved in G2/M phase progression and response to DNA damage, interacts with Rad53p; contai...	6	7	17.5%	0.0015	73776
[View Peptides]	GPM1	Tetrameric phosphoglycerate mutase, mediates the conversion of 3-phosphoglycerate to 2-phosphoglycer...	2	2	17.0%	0.00116	27609
[View Peptides]	YAK1	Serine-threonine protein kinase that is part of a glucose-sensing system involved in growth control ...	7	7	16.7%	0.00124	91245
[View Peptides]	YDR261C-D	Retrotransposon TYA Gag and TYB Pol genes; in YDRCTY1-3 TYB is mutant and probably non-functional	16	24	16.6%	0.00214	181660
[View Peptides]	SOK2	Nuclear protein that plays a regulatory role in the cyclic AMP (cAMP)-dependent protein kinase (PKA)...	6	6	16.6%	0.00109	85643
[View Peptides]	RPS13	Protein component of the small (40S) ribosomal subunit; has similarity to E. coli S15 and rat S13 ri...	2	2	16.6%	0.0019	17029
[View Peptides]	YER138C	Retrotransposon TYA Gag and TYB Pol genes; transcribed/translated as one unit; polyprotein is proces...	17	25	16.5%	0.00204	198561
[View Peptides]	ATP2	Beta subunit of the F1 sector of mitochondrial F1F0 ATP synthase, which is a large, evolutionarily c...	4	4	16.2%	0.00112	54794
[View Peptides]	RPL24A	Ribosomal protein L30 of the large (60S) ribosomal subunit, nearly identical to Rpl24Bp and has simi...	5	5	16.1%	0.00462	17614
[View Peptides]	RPL24B	Ribosomal protein L30 of the large (60S) ribosomal subunit, nearly identical to Rpl24Ap and has simi...	5	5	16.1%	0.00462	17547
[View Peptides]	TDH2	Glyceraldehyde-3-phosphate dehydrogenase, isozyme 2, involved in glycolysis and gluconeogenesis; tet...	3	3	16.0%	0.00129	35847
[View Peptides]	ATP1	Alpha subunit of the F1 sector of mitochondrial F1F0 ATP synthase, which is a large, evolutionarily ...	5	5	15.8%	0.00131	58618
[View Peptides]	MCA1	Putative cysteine protease similar to mammalian caspases; involved in regulation of apoptosis upon h...	4	5	15.7%	0.00158	50649
[View Peptides]	PAB1	Poly(A) binding protein, part of the 3'-end RNA-processing complex, mediates interactions between th...	8	8	15.6%	0.00198	64344
[View Peptides]	YPL247C	Putative protein of unknown function; green fluorescent protein (GFP)-fusion protein localizes to th...	4	6	15.5%	0.00164	57324
[View Peptides]	YER160C	Retrotransposon TYA Gag and TYB Pol genes; transcribed/translated as one unit; polyprotein is proces...	16	24	15.3%	0.00196	198568
[View Peptides]	BRE5	Ubiquitin protease cofactor, forms deubiquitination complex with Ubp3p that coregulates anterograde ...	5	5	15.3%	0.00139	57674
[View Peptides]	YEF3	Translational elongation factor 3, stimulates the binding of aminoacyl-tRNA (AA-tRNA) to ribosomes b...	7	7	15.2%	9.59E-4	115945
[View Peptides]	YDR210W-A	Retrotransposon TYA Gag gene co-transcribed with TYB Pol; translated as TYA or TYA-TYB polyprotein; ...	5	9	15.1%	0.00294	49835
[View Peptides]	YOR192C-A	Retrotransposon TYA Gag gene co-transcribed with TYB Pol; translated as TYA or TYA-TYB polyprotein; ...	5	9	15.1%	0.00294	49736
[View Peptides]	YDR261W-A	Retrotransposon TYA Gag gene co-transcribed with TYB Pol; translated as TYA or TYA-TYB polyprotein; ...	5	9	15.1%	0.00294	49724
[View Peptides]	KRT10	keratin 10	4	4	14.8%	9.65E-4	59519
[View Peptides]	SSO1	Plasma membrane t-SNARE involved in fusion of secretory vesicles at the plasma membrane and in vesic...	2	2	14.8%	9.87E-4	33106
[View Peptides]	RPL19B, RPL19A	Protein component of the large (60S) ribosomal subunit, nearly identical to Rpl19Ap and has similari...	3	4	14.8%	0.00303	21704
[View Peptides]	RPL19B, RPL19A	Protein component of the large (60S) ribosomal subunit, nearly identical to Rpl19Ap and has similari...	3	4	14.8%	0.00303	21704
[View Peptides]	PSP1	Asn and gln rich protein of unknown function; high-copy suppressor of POL1 (DNA polymerase alpha) an...	7	7	14.6%	0.00119	95348
[View Peptides]	YGR027W-B	Retrotransposon TYA Gag and TYB Pol genes; transcribed/translated as one unit; polyprotein is proces...	15	22	14.5%	0.00179	198656
[View Peptides]	CDC19	Pyruvate kinase, functions as a homotetramer in glycolysis to convert phosphoenolpyruvate to pyruvat...	7	7	14.4%	0.002	54545
[View Peptides]	YDJ1	Protein chaperone involved in regulation of the HSP90 and HSP70 functions; involved in protein trans...	3	3	14.4%	0.00105	44671
[View Peptides]	HSC82	Cytoplasmic chaperone of the Hsp90 family, redundant in function and nearly identical with Hsp82p, a...	6	6	14.2%	0.00122	80900
[View Peptides]	YFL002W-B, YGR161W-A	Retrotransposon TYA Gag gene co-transcribed with TYB Pol; translated as TYA or TYA-TYB polyprotein; ...	5	9	14.2%	0.00294	49762
[View Peptides]	YFL002W-B, YGR161W-A	Retrotransposon TYA Gag gene co-transcribed with TYB Pol; translated as TYA or TYA-TYB polyprotein; ...	5	9	14.2%	0.00294	49762
[View Peptides]	YDR210C-D	Retrotransposon TYA Gag and TYB Pol genes; transcribed/translated as one unit; polyprotein is proces...	15	23	14.0%	0.00188	198838
[View Peptides]	YDR316W-B	Retrotransposon TYA Gag and TYB Pol genes; transcribed/translated as one unit; polyprotein is proces...	15	23	14.0%	0.00188	198526
[View Peptides]	Contaminant_KERA...		7	7	14.0%	0.00156	65494
[View Peptides]	PGK1	3-phosphoglycerate kinase, catalyzes transfer of high-energy phosphoryl groups from the acyl phospha...	3	4	13.9%	0.00138	44738
[View Peptides]	YDR365W-B	Retrotransposon TYA Gag and TYB Pol genes; transcribed/translated as one unit; polyprotein is proces...	15	23	13.8%	0.00188	198658
[View Peptides]	YBR012W-B	Retrotransposon TYA Gag and TYB Pol genes; transcribed/translated as one unit; polyprotein is proces...	15	23	13.7%	0.00187	198868
[View Peptides]	IBI2	Protein of unknown function that associates with ribosomes; green fluorescent protein (GFP)-fusion p...	2	2	13.7%	0.00145	22179
[View Peptides]	PDB1	E1 beta subunit of the pyruvate dehydrogenase (PDH) complex, which is an evolutionarily-conserved mu...	2	2	13.4%	7.82E-4	40054
[View Peptides]	SSA4	Heat shock protein that is highly induced upon stress; plays a role in SRP-dependent cotranslational...	10	22	13.2%	0.0049	69651
[View Peptides]	AHA1	Co-chaperone that binds to Hsp82p and activates its ATPase activity; similar to Hch1p; expression is...	3	3	13.1%	0.00123	39436
[View Peptides]	RPL16B	N-terminally acetylated protein component of the large (60S) ribosomal subunit, binds to 5.8 S rRNA;...	2	2	13.1%	0.00145	22249
[View Peptides]	YBL100W-A	Retrotransposon TYA Gag gene co-transcribed with TYB Pol; translated as TYA or TYA-TYB polyprotein; ...	4	5	13.0%	0.00163	49898
[View Peptides]	YLR410W-A	Retrotransposon TYA Gag gene co-transcribed with TYB Pol; translated as TYA or TYA-TYB polyprotein; ...	4	5	13.0%	0.00163	49772
[View Peptides]	FAS1	Beta subunit of fatty acid synthetase, which catalyzes the synthesis of long-chain saturated fatty a...	18	18	12.8%	0.00126	228689
[View Peptides]	YDR098C-B	Retrotransposon TYA Gag and TYB Pol genes; transcribed/translated as one unit; polyprotein is proces...	14	22	12.8%	0.00179	198594
[View Peptides]	DED1	ATP-dependent DEAD (Asp-Glu-Ala-Asp)-box RNA helicase, required for translation initiation of all ye...	3	3	12.7%	7.11E-4	65553
[View Peptides]	SSA3	ATPase involved in protein folding and the response to stress; plays a role in SRP-dependent cotrans...	10	25	12.5%	0.00551	70547
[View Peptides]	FAS2	Alpha subunit of fatty acid synthetase, which catalyzes the synthesis of long-chain saturated fatty ...	12	13	12.2%	9.86E-4	206945
[View Peptides]	YGR038C-B	Retrotransposon TYA Gag and TYB Pol genes; transcribed/translated as one unit; polyprotein is proces...	13	20	12.1%	0.00163	198520
[View Peptides]	YBL005W-A	Retrotransposon TYA Gag gene co-transcribed with TYB Pol; translated as TYA or TYA-TYB polyprotein; ...	3	4	12.0%	0.0013	49285
[View Peptides]	PIL1	Primary component of eisosomes, which are large immobile cell cortex structures associated with endo...	2	2	11.8%	8.44E-4	38349
[View Peptides]	PDA1	E1 alpha subunit of the pyruvate dehydrogenase (PDH) complex, catalyzes the direct oxidative decarbo...	2	2	11.7%	6.81E-4	46343
[View Peptides]	CHC1	Clathrin heavy chain, subunit of the major coat protein involved in intracellular protein transport ...	10	11	11.1%	9.52E-4	187233
[View Peptides]	YER159C-A, YDR31...	Retrotransposon TYA Gag gene co-transcribed with TYB Pol; translated as TYA or TYA-TYB polyprotein; ...	2	2	11.1%	6.5E-4	49129
[View Peptides]	RPL3	Protein component of the large (60S) ribosomal subunit, has similarity to E. coli L3 and rat L3 ribo...	4	5	11.1%	0.00185	43758
[View Peptides]	PAN2	Essential subunit of the Pan2p-Pan3p poly(A)-ribonuclease complex, which acts to control poly(A) tai...	8	9	11.0%	0.00115	127039
[View Peptides]	HSP60	Tetradecameric mitochondrial chaperonin required for ATP-dependent folding of precursor polypeptides...	5	5	11.0%	0.00125	60752
[View Peptides]	SFB3	Component of the Sec23p-Sfb3p heterodimer of the COPII vesicle coat, required for cargo selection du...	3	3	10.9%	4.62E-4	103950
[View Peptides]	FKS1	Catalytic subunit of 1,3-beta-D-glucan synthase, functionally redundant with alternate catalytic sub...	11	13	10.6%	9.92E-4	214849
[View Peptides]	HSP82	Hsp90 chaperone required for pheromone signaling and negative regulation of Hsf1p; docks with Tom70p...	4	4	10.6%	8.07E-4	81406
[View Peptides]	RPS1A	Ribosomal protein 10 (rp10) of the small (40S) subunit; nearly identical to Rps1Bp and has similarit...	2	2	10.6%	0.00112	28743
[View Peptides]	RPS1B	Ribosomal protein 10 (rp10) of the small (40S) subunit; nearly identical to Rps1Ap and has similarit...	2	2	10.6%	0.00112	28812
[View Peptides]	GPH1	Non-essential glycogen phosphorylase required for the mobilization of glycogen, activity is regulate...	6	6	10.3%	9.52E-4	103275
[View Peptides]	PBP1	Component of glucose deprivation induced stress granules, involved in P-body-dependent granule assem...	4	4	10.1%	7.93E-4	78782
[View Peptides]	YDR034C-C	Retrotransposon TYA Gag gene co-transcribed with TYB Pol; translated as TYA or TYA-TYB polyprotein; ...	3	4	10.0%	0.00131	49689
[View Peptides]	YOR343W-A	Retrotransposon TYA Gag gene co-transcribed with TYB Pol; translated as TYA or TYA-TYB polyprotein; ...	3	4	10.0%	0.00131	49868
[View Peptides]	YBL005W-B	Retrotransposon TYA Gag and TYB Pol genes; transcribed/translated as one unit; polyprotein is proces...	8	9	9.9%	7.34E-4	198968
[View Peptides]	PAN3	Essential subunit of the Pan2p-Pan3p poly(A)-ribonuclease complex, which acts to control poly(A) tai...	4	4	9.6%	8.43E-4	76455
[View Peptides]	YJR028W	Retrotransposon TYA Gag gene co-transcribed with TYB Pol; translated as TYA or TYA-TYB polyprotein; ...	2	2	9.5%	6.5E-4	49112
[View Peptides]	YLR227W-A, YML04...	Retrotransposon TYA Gag gene co-transcribed with TYB Pol; translated as TYA or TYA-TYB polyprotein; ...	2	2	9.5%	6.5E-4	48993
[View Peptides]	YOL103W-A	Retrotransposon TYA Gag gene co-transcribed with TYB Pol; translated as TYA or TYA-TYB polyprotein; ...	2	2	9.5%	6.5E-4	49005
[View Peptides]	YLR227W-A, YML04...	Retrotransposon TYA Gag gene co-transcribed with TYB Pol; translated as TYA or TYA-TYB polyprotein; ...	2	2	9.5%	6.5E-4	48993
[View Peptides]	YLR256W-A	Retrotransposon TYA Gag gene co-transcribed with TYB Pol; translated as TYA or TYA-TYB polyprotein; ...	2	2	9.5%	6.5E-4	49003
[View Peptides]	YLR227W-A, YML04...	Retrotransposon TYA Gag gene co-transcribed with TYB Pol; translated as TYA or TYA-TYB polyprotein; ...	2	2	9.5%	6.5E-4	48993
[View Peptides]	YDR365W-A, YPL25...	Retrotransposon TYA Gag gene co-transcribed with TYB Pol; translated as TYA or TYA-TYB polyprotein; ...	2	2	9.5%	6.5E-4	48953
[View Peptides]	NSP1	Essential component of the nuclear pore complex, which mediates nuclear import and export, found in ...	3	3	9.4%	5.22E-4	86516
[View Peptides]	YMR046C	Retrotransposon TYA Gag gene co-transcribed with TYB Pol; translated as TYA or TYA-TYB polyprotein; ...	2	2	9.3%	6.5E-4	49274
[View Peptides]	YGR161C-D	Retrotransposon TYA Gag and TYB Pol genes; transcribed/translated as one unit; polyprotein is proces...	7	7	9.2%	5.71E-4	198558
[View Peptides]	NGR1	RNA binding protein that negatively regulates growth rate; interacts with the 3' UTR of the mitochon...	3	3	9.1%	6.39E-4	75024
[View Peptides]	CTS2	Protein similar to Ashbya gossypii sporulation-specific chitinase	2	2	9.0%	5.6E-4	59118
[View Peptides]	PDC5	Minor isoform of pyruvate decarboxylase, key enzyme in alcoholic fermentation, decarboxylates pyruva...	3	3	8.7%	7.62E-4	61912
[View Peptides]	SAN1	Ubiquitin-protein ligase, involved in the proteasome-dependent degradation of aberrant nuclear prote...	3	4	8.2%	9.38E-4	65618
[View Peptides]	NRP1	Putative RNA binding protein of unknown function; localizes to stress granules induced by glucose de...	3	3	8.1%	5.97E-4	79299
[View Peptides]	YJR029W	Retrotransposon TYA Gag and TYB Pol genes; transcribed/translated as one unit; polyprotein is proces...	6	6	8.0%	4.89E-4	198616
[View Peptides]	YML039W	Retrotransposon TYA Gag and TYB Pol genes; transcribed/translated as one unit; polyprotein is proces...	6	6	8.0%	4.89E-4	198571
[View Peptides]	LSB1	Protein containing an N-terminal SH3 domain; binds Las17p, which is a homolog of human Wiskott-Aldri...	2	2	7.9%	0.00119	26139
[View Peptides]	YHR214C-B	Retrotransposon TYA Gag and TYB Pol genes; transcribed/translated as one unit; polyprotein is proces...	6	6	7.4%	4.79E-4	202816
[View Peptides]	RFA1	Subunit of heterotrimeric Replication Protein A (RPA), which is a highly conserved single-stranded D...	3	3	7.4%	6.91E-4	70348
[View Peptides]	GSC2	Catalytic subunit of 1,3-beta-glucan synthase, involved in formation of the inner layer of the spore...	8	10	7.1%	7.55E-4	216988
[View Peptides]	NRD1	RNA-binding protein that interacts with the C-terminal domain of the RNA polymerase II large subunit...	2	2	7.1%	4.98E-4	63859
[View Peptides]	VPS1	Dynamin-like GTPase required for vacuolar sorting; also involved in actin cytoskeleton organization,...	4	4	7.0%	8.13E-4	78736
[View Peptides]	PUF4	Member of the PUF protein family, which is defined by the presence of Pumilio homology domains that ...	3	3	6.9%	4.83E-4	97798
[View Peptides]	YML045W	Retrotransposon TYA Gag and TYB Pol genes; transcribed/translated as one unit; polyprotein is proces...	5	5	6.8%	4.08E-4	198524
[View Peptides]	YMR045C	Retrotransposon TYA Gag and TYB Pol genes; transcribed/translated as one unit; polyprotein is proces...	5	5	6.7%	4.08E-4	198898
[View Peptides]	POR1	Mitochondrial porin (voltage-dependent anion channel), outer membrane protein required for the maint...	2	2	6.7%	0.00101	30428
[View Peptides]	YJR027W	Retrotransposon TYA Gag and TYB Pol genes; transcribed/translated as one unit; polyprotein is proces...	5	5	6.6%	4.08E-4	198651
[View Peptides]	YLR157C-B	Retrotransposon TYA Gag and TYB Pol genes; transcribed/translated as one unit; polyprotein is proces...	5	5	6.6%	4.08E-4	198544
[View Peptides]	YLR227W-B	Retrotransposon TYA Gag and TYB Pol genes; transcribed/translated as one unit; polyprotein is proces...	5	5	6.6%	4.08E-4	198404
[View Peptides]	PDC6	Minor isoform of pyruvate decarboxylase, decarboxylates pyruvate to acetaldehyde, involved in amino ...	2	2	6.6%	5.08E-4	61581
[View Peptides]	YCL019W	Retrotransposon TYA Gag and TYB Pol genes; transcribed/translated as one unit; polyprotein is proces...	8	12	6.4%	9.7E-4	202095
[View Peptides]	ARO1	Pentafunctional arom protein, catalyzes steps 2 through 6 in the biosynthesis of chorismate, which i...	5	5	5.9%	4.51E-4	174754
[View Peptides]	CBK1	Serine/threonine protein kinase that regulates cell morphogenesis pathways; involved in cell wall bi...	2	2	5.8%	3.79E-4	86946
[View Peptides]	YDR210W-B	Retrotransposon TYA Gag and TYB Pol genes; transcribed/translated as one unit; polyprotein is proces...	7	11	5.7%	8.89E-4	202094
[View Peptides]	YDR261W-B	Retrotransposon TYA Gag and TYB Pol genes; transcribed/translated as one unit; polyprotein is proces...	7	11	5.7%	8.89E-4	201961
[View Peptides]	YAR009C	Retrotransposon TYA Gag and TYB Pol genes; in YARCTY1-1 TYB is mutant and probably non-functional	3	3	5.7%	3.59E-4	136732
[View Peptides]	YFL002W-A, YGR161W-B	Retrotransposon TYA Gag and TYB Pol genes; transcribed/translated as one unit; polyprotein is proces...	7	11	5.5%	8.89E-4	202038
[View Peptides]	YFL002W-A, YGR161W-B	Retrotransposon TYA Gag and TYB Pol genes; transcribed/translated as one unit; polyprotein is proces...	7	11	5.5%	8.89E-4	202038
[View Peptides]	YBL100W-B	Retrotransposon TYA Gag and TYB Pol genes; transcribed/translated as one unit; polyprotein is proces...	6	7	5.2%	5.66E-4	202214
[View Peptides]	SEC27	Essential beta'-coat protein of the COPI coatomer, involved in ER-to-Golgi and Golgi-to-ER transport...	2	2	5.2%	3.22E-4	99445
[View Peptides]	SDH1	Flavoprotein subunit of succinate dehydrogenase (Sdh1p, Sdh2p, Sdh3p, Sdh4p), which couples the oxid...	2	2	5.2%	4.47E-4	70229
[View Peptides]	YMR050C	Retrotransposon TYA Gag and TYB Pol genes; transcribed/translated as one unit; polyprotein is proces...	4	4	5.1%	3.26E-4	198554
[View Peptides]	MKT1	Protein that forms a complex with Pbp1p that may mediate posttranscriptional regulation of HO endonu...	2	2	5.1%	3.45E-4	94494
[View Peptides]	gi\|1143492, gi\|8...	pir\|\|A29821 dnaK-type molecular chaperone HSPA5 precursor - human, gi\|386758\|gb\|AAA52614.1\| GRP78 p...	2	2	5.1%	4.38E-4	72116
[View Peptides]	ENT2	Epsin-like protein required for endocytosis and actin patch assembly and functionally redundant with...	2	2	5.1%	4.67E-4	71807
[View Peptides]	GRP78_RAT	78 kDa glucose-regulated protein OS=Rattus norvegicus GN=Hspa5 PE=1 SV=1	2	2	5.0%	4.38E-4	72347
[View Peptides]	gi\|109893	pir\|\|A37048 dnaK-type molecular chaperone grp78 precursor - mouse	2	2	5.0%	4.37E-4	72421
[View Peptides]	contaminant_GR78...		2	2	5.0%	4.38E-4	72379
[View Peptides]	YOR192C-B	Retrotransposon TYA Gag and TYB Pol genes; transcribed/translated as one unit; polyprotein is proces...	6	10	4.9%	8.08E-4	201983
[View Peptides]	YLR035C-A	Retrotransposon TYA Gag and TYB Pol genes; polyprotein is processed to make a nucleocapsid-like prot...	2	2	4.7%	2.48E-4	131617
[View Peptides]	SEC23	GTPase-activating protein, stimulates the GTPase activity of Sar1p; component of the Sec23p-Sec24p h...	2	2	4.6%	3.73E-4	85385
[View Peptides]	YDR034C-D	Retrotransposon TYA Gag and TYB Pol genes; transcribed/translated as one unit; polyprotein is proces...	5	6	4.5%	4.85E-4	201964
[View Peptides]	YLR410W-B	Retrotransposon TYA Gag and TYB Pol genes; transcribed/translated as one unit; polyprotein is proces...	5	6	4.4%	4.85E-4	202121
[View Peptides]	SSE2	Member of the heat shock protein 70 (HSP70) family; may be involved in protein folding; localized to...	2	4	4.3%	8.26E-4	77621
[View Peptides]	ECM10	Heat shock protein of the Hsp70 family, localized in mitochondrial nucleoids, plays a role in protei...	2	3	4.3%	6.67E-4	70085
[View Peptides]	NEO1	Putative aminophospholipid translocase (flippase) involved in endocytosis and vacuolar biogenesis; l...	3	3	4.2%	3.73E-4	130218
[View Peptides]	CDC48	ATPase in ER, nuclear membrane and cytosol with homology to mammalian p97; in a complex with Npl4p a...	2	2	4.2%	3.43E-4	91996
[View Peptides]	UBI4	Ubiquitin, becomes conjugated to proteins, marking them for selective degradation via the ubiquitin-...	1	15	4.2%	0.00563	42826
[View Peptides]	CDC39	Component of the CCR4-NOT complex, which has multiple roles in regulating mRNA levels including regu...	3	3	3.9%	2.04E-4	240277
[View Peptides]	YNL054W-B	TyB Gag-Pol protein; proteolytically processed to make the Gag, RT, PR, and IN proteins that are req...	3	3	3.9%	2.45E-4	198197
[View Peptides]	YOL103W-B	Retrotransposon TYA Gag and TYB Pol genes; transcribed/translated as one unit; polyprotein is proces...	3	3	3.9%	2.45E-4	198613
[View Peptides]	KRE6	Protein required for beta-1,6 glucan biosynthesis; putative beta-glucan synthase; appears functional...	2	2	3.9%	3.97E-4	80123
[View Peptides]	VMA2	Subunit B of the eight-subunit V1 peripheral membrane domain of the vacuolar H+-ATPase (V-ATPase), a...	2	2	3.9%	5.54E-4	57749
[View Peptides]	YOR343W-B	Retrotransposon TYA Gag and TYB Pol genes; transcribed/translated as one unit; polyprotein is proces...	4	5	3.7%	4.04E-4	202160
[View Peptides]	JSN1	Member of the Puf family of RNA-binding proteins, interacts with mRNAs encoding membrane-associated ...	2	2	3.7%	2.62E-4	120374
[View Peptides]	SEC16	COPII vesicle coat protein required for ER transport vesicle budding; Sec16p is bound to the periphe...	3	3	3.6%	1.96E-4	241694
[View Peptides]	GR78_MAIZE, cont...		2	2	3.6%	6.13E-4	51689
[View Peptides]	SEC31	Component of the Sec13p-Sec31p complex of the COPII vesicle coat, required for vesicle formation in ...	3	3	3.5%	3.37E-4	138703
[View Peptides]	NAB3	Single stranded RNA binding protein; acidic ribonucleoprotein; required for termination of non-poly(...	2	3	3.1%	5.35E-4	90439
[View Peptides]	YNL284C-B	Retrotransposon TYA Gag and TYB Pol genes; transcribed/translated as one unit; polyprotein is proces...	2	2	2.7%	1.63E-4	198997
[View Peptides]	YOR142W-B	Retrotransposon TYA Gag and TYB Pol genes; transcribed/translated as one unit; polyprotein is proces...	2	2	2.7%	1.63E-4	198535
[View Peptides]	NUP116	Subunit of the Nup82 subcomplex of the nuclear pore complex; localized to both sides of the pore; co...	2	2	2.7%	2.57E-4	116234
[View Peptides]	PAN1	Part of actin cytoskeleton-regulatory complex Pan1p-Sla1p-End3p, associates with actin patches on th...	2	2	2.6%	1.93E-4	160266
[View Peptides]	contaminant_GR78...		2	2	2.6%	4.3E-4	73235
[View Peptides]	ACC1	Acetyl-CoA carboxylase, biotin containing enzyme that catalyzes the carboxylation of acetyl-CoA to f...	3	3	2.5%	1.92E-4	250351
[View Peptides]	URA2	Bifunctional carbamoylphosphate synthetase (CPSase)-aspartate transcarbamylase (ATCase), catalyzes t...	2	2	1.3%	1.29E-4	245123

View Mass Spectrometry Run