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Bait Protein: VAM3
Organism: Saccharomyces cerevisiae
Publication: Hao Xu , Youngsoo Jun, James Thompson, John Yates and William Wickner (2010) HOPS Prevents the Disassembly of Trans-SNARE Complexes by Sec17p/Sec18p during Membrane Fusion [In Press]
Comments: sample: hx4

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UNFILTERED Run Results: [filter]

[View our MS interpretation guidelines.]
  Hit Protein Protein Desc Sequence Count Spectrum Count Sequence Coverage NSAF Mol. Wt.
[View Peptides]   KRT10 keratin 10 40 100 51.4% 0.0679 59519
[View Peptides]   RPP2A Ribosomal protein P2 alpha, a component of the ribosomal stalk, which is involved in the interaction... 4 5 48.1% 0.019 10746
[View Peptides]   gi|2119236, gi|4... sp|P35527|K1CI_HUMAN Keratin, type I cytoskeletal 9 (Cytokeratin 9) (K9) (CK 9), gi|545257|gb|AAC60... 26 43 41.5% 0.0279 61987
[View Peptides]   Contaminant_KERA... 33 102 39.5% 0.0639 65494
[View Peptides]   Contaminant_KERA... 23 33 38.2% 0.0282 51531
[View Peptides]   VAM3 Syntaxin-related protein required for vacuolar assembly; functions with Vam7p in vacuolar protein tr... 10 36 36.7% 0.0513 32498
[View Peptides]   RPP2B Ribosomal protein P2 beta, a component of the ribosomal stalk, which is involved in the interaction ... 4 6 36.4% 0.022 11050
[View Peptides]   gi|34069 gi|34069|emb|CAA24760.1| unnamed protein product [Homo sapiens] 18 46 35.6% 0.0519 39219
[View Peptides]   SEC17 Peripheral membrane protein required for vesicular transport between ER and Golgi, the 'priming' ste... 10 21 34.9% 0.029 32803
[View Peptides]   RPL30 Protein component of the large (60S) ribosomal subunit, has similarity to rat L30 ribosomal protein;... 2 2 34.3% 0.00767 11415
[View Peptides]   contaminant_KERA... 19 28 33.7% 0.0241 50499
[View Peptides]   KRT17 keratin 17 19 27 32.9% 0.0252 47974
[View Peptides]   UBB ubiquitin B 2 5 32.9% 0.0265 8565
[View Peptides]   VTI1 Protein involved in cis-Golgi membrane traffic; v-SNARE that interacts with two t-SNARES, Sed5p and ... 5 15 32.3% 0.0279 24668
[View Peptides]   KRT2 keratin 2 28 71 31.0% 0.0444 65865
[View Peptides]   RPL4A N-terminally acetylated protein component of the large (60S) ribosomal subunit, nearly identical to ... 7 11 27.1% 0.0122 39092
[View Peptides]   RPL4B Protein component of the large (60S) ribosomal subunit, nearly identical to Rpl4Ap and has similarit... 7 11 27.1% 0.0122 39062
[View Peptides]   contaminant_KERA... 19 43 24.4% 0.0308 59822
[View Peptides]   VAM7 Component of the vacuole SNARE complex involved in vacuolar morphogenesis; SNAP-25 homolog; function... 8 14 23.4% 0.0179 36711
[View Peptides]   RPL33B Ribosomal protein L37 of the large (60S) ribosomal subunit, nearly identical to Rpl33Ap and has simi... 2 2 22.4% 0.00753 12168
[View Peptides]   RPL33A N-terminally acetylated ribosomal protein L37 of the large (60S) ribosomal subunit, nearly identical... 2 4 22.4% 0.0151 12154
[View Peptides]   KRT5 keratin 5 15 35 22.0% 0.0239 62461
[View Peptides]   RPL40B, RPL40A Fusion protein, identical to Rpl40Ap, that is cleaved to yield ubiquitin and a ribosomal protein of ... 2 3 19.5% 0.00944 14554
[View Peptides]   RPL36A N-terminally acetylated protein component of the large (60S) ribosomal subunit, nearly identical to ... 3 3 19.0% 0.0121 11124
[View Peptides]   RPL36B Protein component of the large (60S) ribosomal subunit, nearly identical to Rpl36Ap and has similari... 3 3 19.0% 0.0121 11135
[View Peptides]   RPL13B Protein component of the large (60S) ribosomal subunit, nearly identical to Rpl13Ap; not essential f... 2 3 17.6% 0.00607 22525
[View Peptides]   RPL13A Protein component of the large (60S) ribosomal subunit, nearly identical to Rpl13Bp; not essential f... 2 3 17.6% 0.00607 22554
[View Peptides]   LYSC_LYSEN Lysyl endopeptidase OS=Lysobacter enzymogenes PE=1 SV=1 15 26 16.7% 0.0389 27961
[View Peptides]   RPS31 Fusion protein that is cleaved to yield a ribosomal protein of the small (40S) subunit and ubiquitin... 2 3 16.4% 0.00795 17216
[View Peptides]   RPL8B Ribosomal protein L4 of the large (60S) ribosomal subunit, nearly identical to Rpl8Ap and has simila... 4 6 16.4% 0.00944 28112
[View Peptides]   RPL8A Ribosomal protein L4 of the large (60S) ribosomal subunit, nearly identical to Rpl8Bp and has simila... 4 6 16.4% 0.00944 28125
[View Peptides]   RPL28 Ribosomal protein of the large (60S) ribosomal subunit, has similarity to E. coli L15 and rat L27a r... 2 4 16.1% 0.0108 16722
[View Peptides]   contaminant_KERA... isb|A33652|A33652|probable keratin 16, type I, pseudogene - human 12 18 16.1% 0.0153 50915
[View Peptides]   RPL17B Protein component of the large (60S) ribosomal subunit, nearly identical to Rpl17Ap and has similari... 2 2 15.8% 0.00438 20551
[View Peptides]   RPL17A Protein component of the large (60S) ribosomal subunit, nearly identical to Rpl17Bp and has similari... 2 2 15.8% 0.00438 20549
[View Peptides]   RPL25 Primary rRNA-binding ribosomal protein component of the large (60S) ribosomal subunit, has similarit... 2 3 15.5% 0.00851 15758
[View Peptides]   IVY1 Phospholipid-binding protein that interacts with both Ypt7p and Vps33p, may partially counteract the... 4 6 15.0% 0.00534 49976
[View Peptides]   RPL6B Protein component of the large (60S) ribosomal subunit, has similarity to Rpl6Ap and to rat L6 ribos... 3 3 14.8% 0.00687 19986
[View Peptides]   RPL6A N-terminally acetylated protein component of the large (60S) ribosomal subunit, has similarity to Rp... 3 3 14.8% 0.00687 19961
[View Peptides]   KRT19 keratin 19 10 15 14.5% 0.0151 44106
[View Peptides]   RPL14B Protein component of the large (60S) ribosomal subunit, nearly identical to Rpl14Ap and has similari... 2 2 13.8% 0.00584 15153
[View Peptides]   RPL14A N-terminally acetylated protein component of the large (60S) ribosomal subunit, nearly identical to ... 2 2 13.8% 0.00584 15167
[View Peptides]   TSA1 Thioredoxin peroxidase, acts as both a ribosome-associated and free cytoplasmic antioxidant; self-as... 2 3 12.8% 0.00617 21590
[View Peptides]   PDB1 E1 beta subunit of the pyruvate dehydrogenase (PDH) complex, which is an evolutionarily-conserved mu... 3 4 12.3% 0.0044 40054
[View Peptides]   VMA6 Subunit d of the five-subunit V0 integral membrane domain of vacuolar H+-ATPase (V-ATPase), an elect... 2 2 11.6% 0.00234 39791
[View Peptides]   RPL7B Protein component of the large (60S) ribosomal subunit, nearly identical to Rpl7Ap and has similarit... 2 3 11.1% 0.00495 27696
[View Peptides]   RPL7A Protein component of the large (60S) ribosomal subunit, nearly identical to Rpl7Bp and has similarit... 2 3 11.1% 0.00495 27638
[View Peptides]   YKT6 Vesicle membrane protein (v-SNARE) with acyltransferase activity; involved in trafficking to and wit... 2 2 11.0% 0.00403 22707
[View Peptides]   SSA2 ATP binding protein involved in protein folding and vacuolar import of proteins; member of heat shoc... 5 5 10.5% 0.00315 69470
[View Peptides]   INT-STD1, Contam... 1 6 9 10.2% 0.00597 69271
[View Peptides]   CPS1 Vacuolar carboxypeptidase yscS; expression is induced under low-nitrogen conditions 3 3 9.5% 0.0021 64597
[View Peptides]   KAR2 ATPase involved in protein import into the ER, also acts as a chaperone to mediate protein folding i... 4 7 9.1% 0.00414 74468
[View Peptides]   CIC1 Essential protein that interacts with proteasome components and has a potential role in proteasome s... 2 2 9.0% 0.00214 42530
[View Peptides]   PIL1 Primary component of eisosomes, which are large immobile cell cortex structures associated with endo... 2 2 8.0% 0.00238 38349
[View Peptides]   PHO8 Repressible alkaline phosphatase, a glycoprotein localized to the vacuole; regulated by levels of in... 3 7 8.0% 0.00498 63004
[View Peptides]   gi|34033, gi|71526 pir||KRHU3 keratin 13, type I, cytoskeletal, long splice form - human, gi|34033|emb|CAA32786.1| ker... 6 10 7.6% 0.0088 49644
[View Peptides]   RPP0 Conserved ribosomal protein P0 similar to rat P0, human P0, and E. coli L10e; shown to be phosphoryl... 3 5 7.4% 0.00646 33717
[View Peptides]   KRT3 keratin 3 6 33 7.3% 0.0211 64511
[View Peptides]   TDH3 Glyceraldehyde-3-phosphate dehydrogenase, isozyme 3, involved in glycolysis and gluconeogenesis; tet... 2 2 7.2% 0.00243 35747
[View Peptides]   TDH2 Glyceraldehyde-3-phosphate dehydrogenase, isozyme 2, involved in glycolysis and gluconeogenesis; tet... 2 2 7.2% 0.00243 35847
[View Peptides]   VPH1 Subunit a of vacuolar-ATPase V0 domain, one of two isoforms (Vph1p and Stv1p); Vph1p is located in V... 4 5 7.1% 0.0024 95529
[View Peptides]   SEC18 ATPase required for vesicular transport between ER and Golgi, the 'priming' step in homotypic vacuol... 3 3 6.6% 0.00159 84056
[View Peptides]   RPL27B Protein component of the large (60S) ribosomal subunit, nearly identical to Rpl27Ap and has similari... 2 2 6.6% 0.00593 15505
[View Peptides]   RPL27A Protein component of the large (60S) ribosomal subunit, nearly identical to Rpl27Bp and has similari... 2 2 6.6% 0.00593 15531
[View Peptides]   UBI4 Ubiquitin, becomes conjugated to proteins, marking them for selective degradation via the ubiquitin-... 2 15 6.6% 0.0159 42826
[View Peptides]   CDC19 Pyruvate kinase, functions as a homotetramer in glycolysis to convert phosphoenolpyruvate to pyruvat... 2 2 6.4% 0.00161 54545
[View Peptides]   FRA1 Protein involved in negative regulation of transcription of iron regulon; forms an iron independent ... 3 3 6.3% 0.00161 84924
[View Peptides]   TEF1, TEF2 Translational elongation factor EF-1 alpha; also encoded by TEF2; functions in the binding reaction ... 3 3 5.7% 0.00264 50033
[View Peptides]   PPN1 Vacuolar endopolyphosphatase with a role in phosphate metabolism; functions as a homodimer 3 3 5.5% 0.00179 78344
[View Peptides]   Contaminant_KERA... 3 13 5.2% 0.00981 57265
[View Peptides]   PHO84 High-affinity inorganic phosphate (Pi) transporter and low-affinity manganese transporter; regulated... 2 2 4.9% 0.00137 64382
[View Peptides]   LYP1 Lysine permease; one of three amino acid permeases (Alp1p, Can1p, Lyp1p) responsible for uptake of c... 2 3 4.4% 0.00198 68090
[View Peptides]   PEP3 Component of CORVET tethering complex; vacuolar peripheral membrane protein that promotes vesicular ... 3 3 4.2% 0.00132 107398
[View Peptides]   FAA4 Long chain fatty acyl-CoA synthetase, activates imported fatty acids with a preference for C12:0-C16... 2 2 4.0% 0.00116 77267
[View Peptides]   FKS1 Catalytic subunit of 1,3-beta-D-glucan synthase, functionally redundant with alternate catalytic sub... 4 5 3.9% 0.00107 214849
[View Peptides]   YDR089W Protein of unknown function; deletion confers resistance to Nickel 2 2 3.3% 9.27E-4 98712
[View Peptides]   YPK9 Vacuolar protein with a possible role in sequestering heavy metals; has similarity to the type V P-t... 4 5 3.2% 0.00137 166749
[View Peptides]   VAM6 Vacuolar protein that plays a critical role in the tethering steps of vacuolar membrane fusion by fa... 2 2 3.1% 7.68E-4 122881
[View Peptides]   YCF1 Vacuolar glutathione S-conjugate transporter of the ATP-binding cassette family, has a role in detox... 3 5 3.0% 0.00133 171120
[View Peptides]   VTC3 Subunit of the vacuolar transporter chaperone (VTC) complex involved in membrane trafficking, vacuol... 2 2 2.9% 9.65E-4 96553
[View Peptides]   PHO91 Low-affinity phosphate transporter of the vacuolar membrane; deletion of pho84, pho87, pho89, pho90,... 2 2 2.7% 9.01E-4 99490
[View Peptides]   YDR261C-D Retrotransposon TYA Gag and TYB Pol genes; in YDRCTY1-3 TYB is mutant and probably non-functional 3 4 2.7% 0.001 181660
[View Peptides]   YDR316W-B Retrotransposon TYA Gag and TYB Pol genes; transcribed/translated as one unit; polyprotein is proces... 3 4 2.5% 9.18E-4 198526
[View Peptides]   YER160C Retrotransposon TYA Gag and TYB Pol genes; transcribed/translated as one unit; polyprotein is proces... 3 4 2.5% 9.18E-4 198568
[View Peptides]   YDR365W-B Retrotransposon TYA Gag and TYB Pol genes; transcribed/translated as one unit; polyprotein is proces... 3 4 2.5% 9.18E-4 198658
[View Peptides]   YER138C Retrotransposon TYA Gag and TYB Pol genes; transcribed/translated as one unit; polyprotein is proces... 3 4 2.5% 9.18E-4 198561
[View Peptides]   YDR098C-B Retrotransposon TYA Gag and TYB Pol genes; transcribed/translated as one unit; polyprotein is proces... 3 4 2.5% 9.18E-4 198594
[View Peptides]   YBR012W-B Retrotransposon TYA Gag and TYB Pol genes; transcribed/translated as one unit; polyprotein is proces... 3 4 2.5% 9.18E-4 198868
[View Peptides]   YDR210C-D Retrotransposon TYA Gag and TYB Pol genes; transcribed/translated as one unit; polyprotein is proces... 3 4 2.5% 9.18E-4 198838
YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle