D parc

DTASelect v1.9
/data/1/aobailey/Kaufman/cac1phos_04122005/parc
/scratch/yates/yrcdb/yeastorf5.fasta
SEQUEST 2.7 in SQT format.
-d 0
Jump to the summary table.

sequest.params modifications:

*	X	0.0
#	X	0.0
@	X	0.0
Static	C	57.0

true	Use criteria
1.8	Minimum +1 XCorr
2.5	Minimum +2 XCorr
3.5	Minimum +3 XCorr
0.0	Minimum DeltCN
1	Minimum charge state
3	Maximum charge state
0.0	Minimum ion proportion
1000	Maximum Sp rank
-1.0	Minimum Sp score
Include	Modified peptide inclusion
Any	Tryptic status requirement
true	Multiple, ambiguous IDs allowed
Ignore	Peptide validation handling
XCorr	Purge duplicate peptides by protein
false	Include only loci with unique peptide
false	Remove subset proteins
Ignore	Locus validation handling
0	Minimum modified peptides per locus
10	Minimum redundancy for low coverage loci
2	Minimum peptides per locus

Locus Key:

Validation Status

Locus

Sequence Count

Spectrum Count

Sequence Coverage

Length

MolWt

Descriptive Name

Similarity Key:

Locus

# of identical peptides

# of differing peptides

ORFP:YBR195C

493

79.6%

422

47365

5.6

MSI1 SGDID:S0000399, Chr II from 611837-610569, reverse complement

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	PARC_cac1phos_04122005-03.01051.01051.2	4.5231	0.4556	1825.29	1824.985	1	992.8	66.7%	11	K.DITHEASSIPIDLQER.Y	2
*	PARC_cac1phos_04122005-02.01470.01470.2	4.7288	0.407	1445.05	1445.612	1	2525.9	90.9%	5	K.LLYDYLNTNSTK.W	2
*	PARC_cac1phos_04122005-03.02784.02784.2	4.5536	0.5119	2319.91	2320.529	1	670.0	44.4%	1	D.YLNTNSTKWPSLTCQFFPD.L	2
*	PARC_cac1phos_04122005-03.03034.03034.2	4.4432	0.5088	2453.55	2453.593	1	1081.1	60.5%	25	K.WPSLTCQFFPDLDTTSDEHR.I	2
*	PARC_cac1phos_04122005-03.03278.03278.3	5.5169	0.3926	2455.49	2453.593	1	2097.6	43.4%	25	K.WPSLTCQFFPDLDTTSDEHR.I	3
*	PARC_cac1phos_04122005-07.01679.01679.2	3.9298	0.4422	1552.29	1552.722	1	1148.4	69.2%	2	R.ILLSSFTSSQKPED.E	2
*	PARC_cac1phos_04122005-03.00488.00488.3	4.2794	0.326	2386.37	2387.689	1	1555.3	46.2%	2	R.ILLSSFTSSQKPEDETIYISK.I	3
*	PARC_cac1phos_04122005-03.02472.02472.2	3.7422	0.325	2387.47	2387.689	1	982.3	45.0%	19	R.ILLSSFTSSQKPEDETIYISK.I	2
*	PARC_cac1phos_04122005-05.01435.01435.2	4.7232	0.3397	1961.33	1961.133	1	1282.5	71.9%	2	S.SFTSSQKPEDETIYISK.I	2
*	PARC_cac1phos_04122005-03.02423.02423.2	4.7275	0.4137	2578.79	2578.787	1	1020.7	50.0%	74	K.WSSLNNFDMDEMEFKPENSTR.F	2
*	PARC_cac1phos_04122005-03.02974.02974.3	4.6512	0.4091	2579.06	2578.787	1	1235.7	38.8%	33	K.WSSLNNFDMDEMEFKPENSTR.F	3
*	PARC_cac1phos_04122005-04.02536.02536.2	5.9354	0.5184	2032.59	2033.217	1	2066.3	71.9%	85	K.HLVNDISIFFPNGECNR.A	2
*	PARC_cac1phos_04122005-04.00480.00480.3	4.8266	0.4001	2034.74	2033.217	1	1194.4	50.0%	13	K.HLVNDISIFFPNGECNR.A	3
*	PARC_cac1phos_04122005-05.01654.01654.2	2.6445	0.2487	1341.13	1341.432	1	561.9	70.0%	1	I.SIFFPNGECNR.A	2
*	PARC_cac1phos_04122005-05.01712.01712.2	2.5958	0.2246	1499.25	1499.71	29	444.5	46.2%	1	R.ARYLPQNPDIIAGA.S	2
*	PARC_cac1phos_04122005-05.01614.01614.2	3.6172	0.2768	1673.33	1673.866	1	1037.3	63.3%	2	R.ARYLPQNPDIIAGASS.D	2
*	PARC_cac1phos_04122005-07.01600.01600.2	4.7664	0.4985	1788.23	1788.955	1	1533.7	65.6%	3	R.ARYLPQNPDIIAGASSD.G	2
*	PARC_cac1phos_04122005-05.01552.01552.2	3.0605	0.253	1445.81	1446.6	1	1195.4	61.5%	2	R.YLPQNPDIIAGASS.D	2
*	PARC_cac1phos_04122005-05.01590.01590.2	3.9485	0.4271	1561.23	1561.689	1	1683.7	71.4%	5	R.YLPQNPDIIAGASSD.G	2
*	PARC_cac1phos_04122005-03.02866.02866.2	4.7913	0.4562	2496.53	2497.767	1	1072.8	61.4%	33	R.YLPQNPDIIAGASSDGAIYIFDR.T	2
*	PARC_cac1phos_04122005-05.02870.02870.2	2.6796	0.1987	2728.85	2727.046	1	812.9	39.6%	1	R.YLPQNPDIIAGASSDGAIYIFDRTK.H	2
*	PARC_cac1phos_04122005-05.02360.02360.2	3.9982	0.3881	2080.07	2080.231	1	919.0	50.0%	4	K.LFGSHGVIQDVEAMDTSSAD.I	2
*	PARC_cac1phos_04122005-07.03010.03010.2	4.7372	0.5888	2807.53	2809.031	1	1241.3	44.2%	2	K.LFGSHGVIQDVEAMDTSSADINEATSL.A	2
*	PARC_cac1phos_04122005-05.04306.04306.3	3.5314	0.0636	4601.45	4602.0	87	299.7	14.3%	2	K.LFGSHGVIQDVEAMDTSSADINEATSLAWNLQQEALLLSSHSN.G	3
*	PARC_cac1phos_04122005-05.04146.04146.3	4.1024	0.3788	4055.51	4056.435	1	627.8	20.8%	1	D.TSSADINEATSLAWNLQQEALLLSSHSNGQVQVWDIK.Q	3
*	PARC_cac1phos_04122005-05.04026.04026.3	3.9239	0.3373	3597.14	3595.006	9	226.8	17.7%	1	D.INEATSLAWNLQQEALLLSSHSNGQVQVWDIK.Q	3
*	PARC_cac1phos_04122005-04.02644.02644.2	3.9275	0.3076	2396.09	2396.703	2	637.6	42.5%	2	D.IKQYSHENPIIDLPLVSINSD.G	2
*	PARC_cac1phos_04122005-02.02163.02163.1	2.1676	0.1901	1247.43	1248.422	78	185.9	50.0%	5	Y.SHENPIIDLPL.V	1
*	PARC_cac1phos_04122005-02.02270.02270.2	2.9708	0.1066	1249.53	1248.422	43	380.3	60.0%	5	Y.SHENPIIDLPL.V	2
*	PARC_cac1phos_04122005-02.02594.02594.2	3.6566	0.3441	2482.71	2483.755	1	741.0	43.2%	1	D.LPLVSINSDGTAVNDVTWMPTHD.S	2
*	PARC_cac1phos_04122005-02.02400.02400.2	3.241	0.3342	2278.91	2279.443	1	834.2	45.0%	3	I.NSDGTAVNDVTWMPTHDSLFA.A	2
*	PARC_cac1phos_04122005-02.02448.02448.2	3.931	0.2886	2350.35	2350.521	1	770.5	40.5%	1	I.NSDGTAVNDVTWMPTHDSLFAA.C	2
*	PARC_cac1phos_04122005-02.02466.02466.2	3.8297	0.3732	2235.77	2236.417	1	688.9	42.5%	3	N.SDGTAVNDVTWMPTHDSLFAA.C	2
*	PARC_cac1phos_04122005-02.02436.02436.2	3.3402	0.3562	2396.17	2396.556	2	332.6	31.0%	2	N.SDGTAVNDVTWMPTHDSLFAAC.T	2
*	PARC_cac1phos_04122005-02.02407.02407.2	3.8658	0.4071	1962.55	1963.172	1	889.7	58.8%	4	D.GTAVNDVTWMPTHDSLFA.A	2
*	PARC_cac1phos_04122005-02.02462.02462.2	4.016	0.4682	2033.51	2034.251	1	647.6	50.0%	5	D.GTAVNDVTWMPTHDSLFAA.C	2
*	PARC_cac1phos_04122005-02.02371.02371.2	3.7291	0.3964	2194.43	2194.389	1	649.3	47.4%	2	D.GTAVNDVTWMPTHDSLFAAC.T	2
*	PARC_cac1phos_04122005-02.02506.02506.2	3.2158	0.2831	2765.79	2765.977	1	300.7	30.0%	2	D.GTAVNDVTWMPTHDSLFAACTEGNAV.S	2
*	PARC_cac1phos_04122005-03.03319.03319.3	4.876	0.4261	3462.95	3463.81	1	820.5	22.6%	7	D.GTAVNDVTWMPTHDSLFAACTEGNAVSLLDLR.T	3
*	PARC_cac1phos_04122005-05.03547.03547.3	4.1131	0.2973	2907.32	2906.249	1	1327.7	30.0%	2	D.VTWMPTHDSLFAACTEGNAVSLLDLR.T	3
*	PARC_cac1phos_04122005-03.02807.02807.2	5.7769	0.5084	1937.53	1938.154	1	2118.8	76.5%	6	D.SLFAACTEGNAVSLLDLR.T	2
*	PARC_cac1phos_04122005-02.01063.01063.2	4.5207	0.3702	1318.39	1318.429	1	1881.1	79.2%	4	K.NSLILASADSNGR.L	2
*	PARC_cac1phos_04122005-02.02296.02296.2	4.364	0.4112	2406.81	2407.614	1	1028.4	47.6%	6	K.SPIATMEHGTSVSTLEWSPNFD.T	2
*	PARC_cac1phos_04122005-05.03562.03562.3	6.8373	0.4599	3790.55	3791.178	1	1220.7	23.6%	50	K.SPIATMEHGTSVSTLEWSPNFDTVLATAGQEDGLVK.L	3
*	PARC_cac1phos_04122005-02.02942.02942.2	4.6479	0.505	2277.79	2278.48	1	1269.7	55.0%	6	L.EWSPNFDTVLATAGQEDGLVK.L	2
*	PARC_cac1phos_04122005-05.03050.03050.2	3.1028	0.2418	2637.83	2638.813	3	404.4	29.5%	1	A.TAGQEDGLVKLWDTSCEETIFTH.G	2
*	PARC_cac1phos_04122005-07.03003.03003.3	3.684	0.3351	2638.94	2638.813	23	544.7	26.1%	1	A.TAGQEDGLVKLWDTSCEETIFTH.G	3
*	PARC_cac1phos_04122005-05.03067.03067.2	2.634	0.2608	2465.99	2466.629	1	649.9	37.5%	1	A.GQEDGLVKLWDTSCEETIFTH.G	2
*	PARC_cac1phos_04122005-05.02110.02110.2	4.6453	0.4539	1639.99	1639.725	1	1400.7	75.0%	3	K.LWDTSCEETIFTH.G	2
*	PARC_cac1phos_04122005-02.02840.02840.2	2.9202	0.4077	1757.55	1756.93	1	757.3	57.1%	1	L.GVNDISWDAHDPWLM.C	2
*	PARC_cac1phos_04122005-02.02798.02798.2	3.0091	0.3446	1486.09	1486.642	1	523.9	72.7%	5	N.DISWDAHDPWLM.C	2
*	PARC_cac1phos_04122005-06.01286.01286.3	5.8555	0.4303	2890.7	2891.243	1	1722.6	37.0%	9	D.PWLMCSVANDNSVHIWKPAGNLVGHS.-	3
*	PARC_cac1phos_04122005-06.01287.01287.2	4.2839	0.3984	2890.89	2891.243	1	1099.0	40.0%	1	D.PWLMCSVANDNSVHIWKPAGNLVGHS.-	2

ORFP:YGR192C

205

67.5%

332

35747

7.0

TDH3 SGDID:S0003424, Chr VII from 883812-882814, reverse complement

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
	PARC_cac1phos_04122005-07.03171.03171.2	3.2385	0.3094	1089.53	1089.286	1	1403.5	83.3%	1	M.VRVAINGFGR.I	2 2
*	PARC_cac1phos_04122005-05.01870.01870.2	3.3559	0.3127	1610.75	1610.851	2	756.6	57.1%	4	R.IALSRPNVEVVALND.P	2
*	PARC_cac1phos_04122005-04.03316.03316.3	3.6686	0.2535	3175.31	3173.654	2	529.3	21.3%	1	R.IALSRPNVEVVALNDPFITNDYAAYMFK.Y	3
*	PARC_cac1phos_04122005-03.03290.03290.2	4.5768	0.4437	2632.33	2632.991	1	1026.3	54.5%	6	R.PNVEVVALNDPFITNDYAAYMFK.Y	2
*	PARC_cac1phos_04122005-02.02522.02522.2	4.2204	0.4259	1811.57	1811.019	1	1303.9	78.6%	2	L.NDPFITNDYAAYMFK.Y	2
*	PARC_cac1phos_04122005-02.02546.02546.2	4.9834	0.4602	1581.49	1581.826	1	1815.0	87.5%	19	D.PFITNDYAAYMFK.Y	2
*	PARC_cac1phos_04122005-04.00562.00562.2	3.2781	0.4067	1277.21	1277.423	1	1454.7	80.0%	1	S.HDDKHIIVDGK.K	2
*	PARC_cac1phos_04122005-02.03058.03058.2	5.7036	0.5586	2403.75	2404.638	1	1504.7	61.4%	14	R.DPANLPWGSSNVDIAIDSTGVFK.E	2
*	PARC_cac1phos_04122005-02.03034.03034.2	5.8572	0.5309	2289.95	2289.55	1	1464.8	59.5%	13	D.PANLPWGSSNVDIAIDSTGVFK.E	2
*	PARC_cac1phos_04122005-02.03288.03288.2	2.8264	0.2736	2645.81	2646.913	232	148.6	18.8%	1	D.PANLPWGSSNVDIAIDSTGVFKELD.T	2
*	PARC_cac1phos_04122005-02.02940.02940.2	5.1219	0.5222	2191.13	2192.433	1	1509.2	62.5%	9	P.ANLPWGSSNVDIAIDSTGVFK.E	2
*	PARC_cac1phos_04122005-07.02846.02846.2	3.8066	0.4476	1995.75	1996.179	1	810.3	47.2%	3	S.SNVDIAIDSTGVFKELDTA.Q	2
	PARC_cac1phos_04122005-03.02148.02148.2	2.9081	0.0062	1679.31	1680.074	2	644.8	50.0%	2	K.KVVITAPSSTAPMFVM.G	2 2
	PARC_cac1phos_04122005-02.01974.01974.2	5.214	0.5655	2207.65	2208.593	1	1014.2	60.0%	14	K.VVITAPSSTAPMFVMGVNEEK.Y	2 2
	PARC_cac1phos_04122005-02.02034.02034.3	4.4698	0.4451	2208.32	2208.593	1	1326.6	37.5%	4	K.VVITAPSSTAPMFVMGVNEEK.Y	3 3
	PARC_cac1phos_04122005-02.01207.01207.2	3.7709	0.434	1821.35	1821.013	1	899.0	56.2%	2	K.IVSNASCTTNCLAPLAK.V	2 2 2
	PARC_cac1phos_04122005-04.02535.02535.2	4.573	0.4837	1847.59	1847.093	1	2132.4	68.8%	4	K.VINDAFGIEEGLMTTVH.S	2 2 2
*	PARC_cac1phos_04122005-05.03972.03972.2	2.6432	0.3808	2045.93	2047.331	1	517.8	38.9%	1	K.VINDAFGIEEGLMTTVHSL.T	2
*	PARC_cac1phos_04122005-05.03938.03938.2	5.7154	0.4173	2576.23	2576.924	1	1614.4	50.0%	18	K.VINDAFGIEEGLMTTVHSLTATQK.T	2
*	PARC_cac1phos_04122005-05.03939.03939.3	4.4159	0.3865	2576.66	2576.924	1	1171.5	37.0%	7	K.VINDAFGIEEGLMTTVHSLTATQK.T	3
*	PARC_cac1phos_04122005-05.03247.03247.2	4.9248	0.4082	2135.63	2135.44	1	1240.5	52.6%	2	D.AFGIEEGLMTTVHSLTATQK.T	2
	PARC_cac1phos_04122005-05.01307.01307.2	4.2977	0.511	1645.75	1645.813	1	628.2	58.8%	1	R.GGRTASGNIIPSSTGAAK.A	2 2 2
	PARC_cac1phos_04122005-07.01287.01287.2	3.0109	0.3614	1375.01	1375.522	2	479.6	60.7%	3	R.TASGNIIPSSTGAAK.A	2 2 2
	PARC_cac1phos_04122005-05.02214.02214.1	2.2532	0.3682	1470.59	1471.734	1	706.3	57.7%	3	R.VPTVDVSVVDLTVK.L	1 1 1
	PARC_cac1phos_04122005-04.01726.01726.2	4.4309	0.4728	1471.37	1471.734	1	1336.2	73.1%	63	R.VPTVDVSVVDLTVK.L	2 2 2
*	PARC_cac1phos_04122005-04.03695.03695.3	4.3311	0.3405	3571.34	3571.876	1	1112.9	22.8%	3	K.GVLGYTEDAVVSSDFLGDSHSSIFDASAGIQLSPK.F	3
*	PARC_cac1phos_04122005-05.03146.03146.2	3.0648	0.3171	2110.13	2110.461	1	421.7	36.1%	1	D.ASAGIQLSPKFVKLVSWYD.N	2
	PARC_cac1phos_04122005-02.01584.01584.2	3.0343	0.366	1754.05	1753.865	4	588.3	50.0%	3	K.LVSWYDNEYGYSTR.V	2 2

Similarities: ORFP:YJR009C(11:17)
ORFP:YJL052W(6:22)

ORFP:YML102W

332

62.6%

468

51252

6.3

CAC2 SGDID:S0004570, Chr XIII from 68294-69700

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	PARC_cac1phos_04122005-03.03934.03934.2	3.1247	0.3687	1901.99	1900.1	1	495.1	57.1%	26	I.YWHDSQPVYSLTFQK.N	2
*	PARC_cac1phos_04122005-05.01627.01627.1	2.5467	0.2511	1297.63	1298.481	1	494.9	60.0%	2	D.SQPVYSLTFQK.N	1
*	PARC_cac1phos_04122005-05.01622.01622.2	2.6546	0.2863	1297.75	1298.481	1	425.2	70.0%	1	D.SQPVYSLTFQK.N	2
*	PARC_cac1phos_04122005-05.01626.01626.1	2.7755	0.352	1082.47	1083.272	1	645.4	68.8%	2	Q.PVYSLTFQK.N	1
*	PARC_cac1phos_04122005-02.00867.00867.1	2.1604	0.1202	922.45	923.013	1	677.2	75.0%	1	K.LFTAGGDNK.V	1
*	PARC_cac1phos_04122005-05.04551.04551.3	6.5262	0.4832	2521.58	2521.879	1	2378.0	42.9%	25	R.KIESLDFLGSLTHHEQAINVIR.F	3
*	PARC_cac1phos_04122005-05.04098.04098.2	4.4515	0.4391	2522.03	2521.879	1	1394.3	47.6%	8	R.KIESLDFLGSLTHHEQAINVIR.F	2
*	PARC_cac1phos_04122005-05.02906.02906.3	4.4065	0.3995	2393.0	2393.705	1	1295.5	40.0%	5	K.IESLDFLGSLTHHEQAINVIR.F	3
*	PARC_cac1phos_04122005-05.03088.03088.2	3.2835	0.5169	2393.07	2393.705	1	822.5	42.5%	3	K.IESLDFLGSLTHHEQAINVIR.F	2
*	PARC_cac1phos_04122005-07.01303.01303.2	3.0769	0.265	1281.07	1281.365	1	1837.0	83.3%	2	R.FNSKGDVLASAGD.D	2
*	PARC_cac1phos_04122005-05.01319.01319.2	4.2235	0.371	1396.03	1396.453	1	1736.7	76.9%	2	R.FNSKGDVLASAGDD.G	2
*	PARC_cac1phos_04122005-02.01986.01986.2	5.695	0.4239	1744.69	1744.942	1	2490.1	81.2%	31	K.GDVLASAGDDGQVLLWK.Q	2
*	PARC_cac1phos_04122005-05.02288.02288.2	3.6037	0.3082	2117.99	2117.277	1	743.7	42.1%	2	K.GDVLASAGDDGQVLLWKQED.P	2
*	PARC_cac1phos_04122005-05.01439.01439.2	3.3048	0.4337	1774.71	1774.885	1	739.4	57.1%	2	K.QEDPNTQQESVVRPF.G	2
*	PARC_cac1phos_04122005-02.01200.01200.2	2.5698	0.2935	1401.81	1402.55	1	792.1	63.6%	1	D.PNTQQESVVRPF.G	2
*	PARC_cac1phos_04122005-02.01544.01544.2	2.681	0.2763	1706.65	1705.883	3	471.7	42.9%	1	D.PNTQQESVVRPFGMD.A	2
*	PARC_cac1phos_04122005-07.02694.02694.2	5.4655	0.5097	2122.03	2123.243	1	2035.8	60.0%	32	R.GGSGATAAAEIYDLAWSPDNR.N	2
*	PARC_cac1phos_04122005-02.02335.02335.3	5.1873	0.3868	2124.11	2123.243	1	2194.4	43.8%	7	R.GGSGATAAAEIYDLAWSPDNR.N	3
*	PARC_cac1phos_04122005-05.01547.01547.2	3.951	0.3584	1392.39	1392.579	1	1734.4	81.8%	5	R.NIVVACMDNSIR.L	2
*	PARC_cac1phos_04122005-05.03763.03763.3	4.8848	0.3656	4292.3	4290.722	1	590.7	21.7%	1	R.LFDVGAGMLVCGQSDHGHYVQGVAWDPLNQFILSQSADR.S	3
*	PARC_cac1phos_04122005-02.03016.03016.2	3.047	0.3162	1862.01	1862.052	2	589.3	46.7%	1	V.AWDPLNQFILSQSADR.S	2
*	PARC_cac1phos_04122005-05.01822.01822.2	4.5452	0.3843	1489.15	1489.671	1	1672.1	83.3%	5	D.PLNQFILSQSADR.S	2
*	PARC_cac1phos_04122005-05.02966.02966.3	4.071	0.4187	1900.79	1901.257	1	1200.6	40.3%	4	R.SLHVYGVILSSAGVVTGLK.L	3
*	PARC_cac1phos_04122005-05.03015.03015.2	6.281	0.5275	1903.75	1901.257	1	2612.1	72.2%	27	R.SLHVYGVILSSAGVVTGLK.L	2
*	PARC_cac1phos_04122005-05.01859.01859.2	3.9801	0.3529	1302.63	1301.569	1	1418.5	69.2%	1	Y.GVILSSAGVVTGLK.L	2
*	PARC_cac1phos_04122005-07.01704.01704.2	2.6452	0.2014	1328.31	1328.474	1	661.9	63.6%	1	K.AELPCPGDVLRT.N	2
*	PARC_cac1phos_04122005-04.03488.03488.3	4.2691	0.3257	1886.66	1887.105	1	690.3	46.4%	7	R.TNYLFHNETLPSFFR.R	3
*	PARC_cac1phos_04122005-04.02934.02934.2	4.8229	0.4591	1886.69	1887.105	1	1276.3	64.3%	37	R.TNYLFHNETLPSFFR.R	2
*	PARC_cac1phos_04122005-02.01432.01432.2	4.058	0.4642	1716.87	1716.854	1	1210.6	60.7%	7	K.VAGDEVANCVYVYTR.S	2
*	PARC_cac1phos_04122005-03.02739.02739.2	2.8914	0.2682	1834.49	1833.118	1	713.9	56.7%	1	K.KPALMAAFSPVFYETC.Q	2
*	PARC_cac1phos_04122005-05.02723.02723.3	5.6672	0.4102	2088.98	2089.423	1	1900.7	47.1%	26	K.KPALMAAFSPVFYETCQK.S	3
*	PARC_cac1phos_04122005-04.02954.02954.2	6.0587	0.5352	2088.99	2089.423	1	2657.0	76.5%	38	K.KPALMAAFSPVFYETCQK.S	2
*	PARC_cac1phos_04122005-02.02411.02411.2	3.3543	0.3728	1863.93	1864.132	1	626.4	60.0%	4	P.ALMAAFSPVFYETCQK.S	2
*	PARC_cac1phos_04122005-02.02987.02987.2	3.5825	0.3665	2242.69	2243.485	1	513.3	42.1%	2	D.TDVLEPLCVVGNIHYSPITD.L	2
*	PARC_cac1phos_04122005-02.02662.02662.2	4.4929	0.4952	2026.97	2027.291	1	1728.9	64.7%	2	D.VLEPLCVVGNIHYSPITD.L	2
*	PARC_cac1phos_04122005-02.03455.03455.2	2.6193	0.2022	2613.15	2613.936	2	324.8	27.3%	1	D.VLEPLCVVGNIHYSPITDLAWSE.D	2
*	PARC_cac1phos_04122005-02.03390.03390.2	3.6585	0.4443	2729.35	2729.025	1	880.2	39.1%	2	D.VLEPLCVVGNIHYSPITDLAWSED.G	2
*	PARC_cac1phos_04122005-06.01202.01202.3	5.1616	0.4673	3498.71	3498.806	1	870.1	26.6%	1	D.TETQFGSRIEPPAMHAEPLDTDESAVAAKNQR.E	3
*	PARC_cac1phos_04122005-03.01010.01010.2	4.0668	0.3081	2193.99	2193.433	1	350.7	47.5%	6	R.IEPPAMHAEPLDTDESAVAAK.N	2

ORFP:YOL040C

59.2%

142

16002

10.7

RPS15 SGDID:S0005400, Chr XV from 253575-253147, reverse complement

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	PARC_cac1phos_04122005-05.01944.01944.1	2.4094	0.1146	1311.55	1312.521	1	976.2	70.0%	1	K.LLEMSTEDFVK.L	1
*	PARC_cac1phos_04122005-07.01919.01919.2	3.8125	0.2164	1313.57	1312.521	1	1493.1	90.0%	6	K.LLEMSTEDFVK.L	2
*	PARC_cac1phos_04122005-05.01266.01266.2	3.5726	0.3571	1506.27	1506.742	1	663.8	57.1%	3	R.AAKLAAPENEKPAPV.R	2
*	PARC_cac1phos_04122005-02.03486.03486.3	3.6383	0.3929	2034.65	2035.468	1	447.3	40.3%	1	R.NMIIVPEMIGSVVGIYNGK.A	3
*	PARC_cac1phos_04122005-02.03479.03479.2	6.2145	0.5567	2034.73	2035.468	1	1412.9	75.0%	13	R.NMIIVPEMIGSVVGIYNGK.A	2
*	PARC_cac1phos_04122005-05.03690.03690.3	6.8218	0.5911	3168.62	3169.625	1	2205.4	35.6%	21	K.AFNQVEIRPEMLGHYLGEFSITYTPVR.H	3
*	PARC_cac1phos_04122005-05.03734.03734.2	3.2296	0.3645	3168.73	3169.625	1	497.6	34.6%	4	K.AFNQVEIRPEMLGHYLGEFSITYTPVR.H	2
*	PARC_cac1phos_04122005-07.03590.03590.2	2.8011	0.3448	2112.17	2114.424	3	332.8	35.3%	4	P.EMLGHYLGEFSITYTPVR.H	2
*	PARC_cac1phos_04122005-06.01198.01198.2	3.0574	0.3082	1262.53	1262.495	1	556.0	72.7%	1	R.AGATTSRFIPLK.-	2

ORFP:YPR018W

398

59.1%

606

70210

6.7

RLF2 SGDID:S0006222, Chr XVI from 594471-596291

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	PARC_cac1phos_04122005-07.02716.02716.2	4.5041	0.3595	1455.49	1456.682	1	1879.1	79.2%	15	K.GILSFFQNTTTVK.S	2
*	PARC_cac1phos_04122005-05.02750.02750.1	2.0003	0.0813	1455.66	1456.682	11	194.5	41.7%	1	K.GILSFFQNTTTVK.S	1
*	PARC_cac1phos_04122005-05.00472.00472.2	3.2648	0.2193	2559.83	2559.888	2	330.6	36.4%	1	K.EKDVITLDDPKEDVSGPMIETVK.Q	2
*	PARC_cac1phos_04122005-02.00866.00866.2	2.6421	0.1466	1190.39	1190.267	1	1123.4	85.0%	1	L.DDPKEDVSGPM.I	2
*	PARC_cac1phos_04122005-05.01219.01219.2	3.6583	0.3878	1752.53	1752.944	1	900.7	53.6%	1	K.SINKECADEMKTTPK.K	2
*	PARC_cac1phos_04122005-05.01220.01220.2	4.0554	0.3544	1951.67	1952.196	1	1095.4	62.5%	2	K.SINKECADEMKTTPKKA.N	2
*	PARC_cac1phos_04122005-05.01402.01402.2	3.2824	0.2871	1254.59	1254.392	1	1305.8	83.3%	2	A.NAEDKLLCYK.N	2
*	PARC_cac1phos_04122005-02.01318.01318.2	2.6053	0.2772	1397.41	1397.615	2	448.0	62.5%	1	K.QVPNGNIIAIETK.S	2
*	PARC_cac1phos_04122005-05.01399.01399.1	2.0511	8.0E-4	958.39	959.131	52	560.7	62.5%	1	N.GNIIAIETK.S	1
*	PARC_cac1phos_04122005-05.00676.00676.2	2.5824	0.2058	1772.81	1773.086	2	433.8	57.7%	1	S.KKEEAKREKELKKQ.Q	2
*	PARC_cac1phos_04122005-05.00588.00588.3	3.5517	0.1911	2087.6	2087.344	2	990.0	38.3%	1	K.KQKEEEKRRKEEARLE.A	3
*	PARC_cac1phos_04122005-03.00570.00570.2	2.9738	0.2762	1317.77	1317.482	1	977.9	68.2%	1	K.KLSDSNTPVVEK.S	2
*	PARC_cac1phos_04122005-02.00822.00822.2	3.5999	0.2891	1189.27	1189.308	1	1263.0	80.0%	1	K.LSDSNTPVVEK.S	2
*	PARC_cac1phos_04122005-05.03004.03004.2	3.3015	0.2969	2509.77	2510.849	1	560.7	37.5%	1	D.SNTPVVEKSDYEKFFLPFYAK.D	2
*	PARC_cac1phos_04122005-05.02911.02911.2	3.0105	0.2364	2626.01	2625.937	1	665.1	38.1%	1	D.SNTPVVEKSDYEKFFLPFYAKD.G	2
*	PARC_cac1phos_04122005-05.02972.02972.2	3.6774	0.3303	1568.51	1568.812	1	1062.5	77.3%	1	S.DYEKFFLPFYAK.D	2
*	PARC_cac1phos_04122005-05.02700.02700.2	2.7068	0.3486	1454.13	1453.723	1	710.3	65.0%	1	D.YEKFFLPFYAK.D	2
*	PARC_cac1phos_04122005-03.02400.02400.1	2.4797	0.0198	1034.59	1033.258	1	443.4	71.4%	6	K.FFLPFYAK.D	1
*	PARC_cac1phos_04122005-07.01323.01323.2	3.6803	0.2212	1175.17	1175.324	1	1329.9	88.9%	2	R.KIDDELLNSK.D	2
*	PARC_cac1phos_04122005-02.00859.00859.2	3.128	0.0894	1108.83	1108.147	2	696.7	83.3%	1	K.DKTSSDDLLN.W	2
*	PARC_cac1phos_04122005-03.02696.02696.3	3.998	0.1142	1778.96	1778.916	5	1405.7	44.6%	2	K.DKTSSDDLLNWLQSR.R	3
*	PARC_cac1phos_04122005-03.02858.02858.2	5.6399	0.4395	1778.97	1778.916	1	2741.5	82.1%	27	K.DKTSSDDLLNWLQSR.R	2
*	PARC_cac1phos_04122005-02.02678.02678.2	4.5125	0.2538	1535.23	1535.654	1	1574.8	79.2%	16	K.TSSDDLLNWLQSR.R	2
*	PARC_cac1phos_04122005-07.02838.02838.2	3.2423	0.1903	1145.37	1145.304	1	1527.0	87.5%	1	D.DLLNWLQSR.R	2
*	PARC_cac1phos_04122005-05.02022.02022.2	2.9777	0.173	1030.13	1030.215	2	900.1	92.9%	2	D.LLNWLQSR.R	2
*	PARC_cac1phos_04122005-03.00582.00582.2	2.9076	0.0374	1306.49	1306.412	7	828.5	70.0%	1	L.KEKTDDELQSL.L	2
*	PARC_cac1phos_04122005-05.02722.02722.2	3.0427	0.4018	1953.89	1952.172	1	643.4	43.8%	1	K.EKTDDELQSLLAQVPHK.Y	2
*	PARC_cac1phos_04122005-03.01278.01278.2	4.8111	0.4273	1694.65	1694.882	1	1672.1	67.9%	55	K.TDDELQSLLAQVPHK.Y	2
*	PARC_cac1phos_04122005-03.02474.02474.3	5.0246	0.4184	1695.65	1694.882	1	1046.2	51.8%	44	K.TDDELQSLLAQVPHK.Y	3
*	PARC_cac1phos_04122005-03.02419.02419.2	3.2562	0.3466	1478.33	1478.688	1	631.3	66.7%	2	D.DELQSLLAQVPHK.Y	2
*	PARC_cac1phos_04122005-03.02210.02210.2	3.961	0.3662	1603.13	1603.817	1	801.4	75.0%	7	K.FYENVRPPFIGTY.S	2
*	PARC_cac1phos_04122005-03.02442.02442.2	3.2712	0.3616	1822.73	1822.088	5	314.8	39.3%	2	K.FYENVRPPFIGTYSM.D	2
*	PARC_cac1phos_04122005-03.02290.02290.2	3.8779	0.4648	1937.29	1937.177	1	1101.0	66.7%	3	K.FYENVRPPFIGTYSMD.F	2
*	PARC_cac1phos_04122005-02.02399.02399.2	2.9348	0.4643	1860.87	1861.076	2	309.8	50.0%	1	T.YSMDFTLPPNDPFSTK.G	2
*	PARC_cac1phos_04122005-02.02266.02266.2	3.0159	0.3278	1697.57	1697.9	1	537.2	64.3%	8	Y.SMDFTLPPNDPFSTK.G	2
*	PARC_cac1phos_04122005-02.01810.01810.2	2.7212	0.1718	1480.65	1479.629	99	209.4	50.0%	1	M.DFTLPPNDPFSTK.G	2
*	PARC_cac1phos_04122005-02.02028.02028.1	2.1717	0.1856	1002.76	1003.1	2	481.5	75.0%	3	L.PPNDPFSTK.G	1
*	PARC_cac1phos_04122005-02.01720.01720.2	2.9831	0.2233	1968.25	1968.047	1	589.1	47.1%	1	D.GFLDSEENSDLDGLPCAK.R	2
*	PARC_cac1phos_04122005-05.02610.02610.2	3.146	0.2667	1486.65	1486.847	1	742.4	62.5%	2	R.KFVGPLIPTICLK.S	2
*	PARC_cac1phos_04122005-04.02440.02440.2	3.1272	0.1611	1358.15	1358.673	4	324.8	59.1%	4	K.FVGPLIPTICLK.S	2
*	PARC_cac1phos_04122005-03.02342.02342.1	2.8337	0.3068	1359.6	1358.673	1	479.5	59.1%	5	K.FVGPLIPTICLK.S	1
*	PARC_cac1phos_04122005-03.02334.02334.1	2.2537	0.3475	1111.38	1112.364	1	424.7	66.7%	2	V.GPLIPTICLK.S	1
*	PARC_cac1phos_04122005-02.00970.00970.2	3.3222	0.2427	1311.33	1311.348	6	960.0	75.0%	1	K.SNFENLSEENK.R	2
*	PARC_cac1phos_04122005-07.01247.01247.2	2.641	0.2277	1467.37	1467.535	2	516.3	50.0%	1	K.SNFENLSEENKR.Y	2
5	PARC_cac1phos_04122005-02.00930.00930.1	2.2038	0.3916	792.42	792.954	9	624.5	80.0%	2	R.YLQQLK.A	1 1
*	PARC_cac1phos_04122005-03.02854.02854.2	4.6902	0.4377	1999.69	1999.268	1	1089.4	61.8%	28	K.AEVIIETDGPIDPFKEPK.T	2
*	PARC_cac1phos_04122005-02.00814.00814.2	5.1648	0.4849	1906.63	1906.958	1	2097.1	70.6%	1	R.SNSDLQAQTASQSQSPEK.K	2
*	PARC_cac1phos_04122005-02.02652.02652.2	3.7806	0.2112	1276.11	1276.552	3	1126.4	80.0%	15	K.AMITDPMDLLR.L	2
*	PARC_cac1phos_04122005-02.02430.02430.1	2.1972	0.2853	1276.77	1276.552	46	140.8	50.0%	4	K.AMITDPMDLLR.L	1
*	PARC_cac1phos_04122005-02.03199.03199.2	3.133	0.2285	1119.93	1120.352	1	806.4	81.2%	7	D.PMDLLRLFD.G	2
*	PARC_cac1phos_04122005-02.03616.03616.2	2.7919	0.2439	1519.77	1519.756	1	973.8	66.7%	1	D.PMDLLRLFDGVQD.S	2
*	PARC_cac1phos_04122005-05.04186.04186.3	4.485	0.4283	2983.46	2983.406	1	973.1	28.8%	2	D.PMDLLRLFDGVQDSTFSLGTVTEIAQK.N	3
*	PARC_cac1phos_04122005-04.03666.03666.2	3.3961	0.3135	2415.73	2413.69	1	597.1	38.1%	1	L.RLFDGVQDSTFSLGTVTEIAQK.N	2
*	PARC_cac1phos_04122005-04.02714.02714.2	5.7825	0.5571	2256.77	2257.502	1	1668.9	60.0%	57	R.LFDGVQDSTFSLGTVTEIAQK.N	2
*	PARC_cac1phos_04122005-07.02906.02906.3	4.7352	0.4172	2257.76	2257.502	1	1316.8	38.8%	6	R.LFDGVQDSTFSLGTVTEIAQK.N	3
*	PARC_cac1phos_04122005-05.02364.02364.2	4.1527	0.4793	1997.69	1997.166	1	1219.0	58.3%	1	F.DGVQDSTFSLGTVTEIAQK.N	2
*	PARC_cac1phos_04122005-05.02338.02338.2	5.1186	0.467	1882.47	1882.078	1	1386.2	67.6%	27	D.GVQDSTFSLGTVTEIAQK.N	2
*	PARC_cac1phos_04122005-06.01292.01292.3	4.2559	0.2509	4302.44	4299.871	1	451.5	17.6%	1	D.GVQDSTFSLGTVTEIAQKNLPQYNKQTIKNTIKEYAIR.S	3
*	PARC_cac1phos_04122005-05.02067.02067.2	4.349	0.4733	1482.23	1482.674	1	1543.6	80.8%	5	D.STFSLGTVTEIAQK.N	2
*	PARC_cac1phos_04122005-02.01154.01154.2	3.3374	0.1225	1146.23	1146.205	1	1166.6	87.5%	2	K.DAQNWENLR.A	2
*	PARC_cac1phos_04122005-05.01702.01702.2	4.869	0.4084	2029.37	2030.179	1	1017.8	61.8%	2	K.DAQNWENLRANANMPTPS.L	2
*	PARC_cac1phos_04122005-05.01342.01342.2	2.6789	0.1229	1031.37	1031.116	4	784.7	85.7%	2	D.AQNWENLR.A	2

Similarities: ORFP:YOR127W(1:61)

U	ORFP:YBR031W	16	51	54.4%	362	39092	10.6	RPL4A SGDID:S0000235, Chr II from 300125-301213
U	ORFP:YDR012W	16	51	54.4%	362	39062	10.6	RPL4B SGDID:S0002419, Chr IV from 471849-472937

Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
PARC_cac1phos_04122005-05.03864.03864.3	4.586	0.3636	3635.33	3636.186	2	277.1	19.1%	2	H.SLTGEATANALPLPAVFSAPIRPDIVHTVFTSVNK.N	3
PARC_cac1phos_04122005-05.01247.01247.2	4.2604	0.4828	1445.69	1445.491	1	1448.7	69.2%	1	K.AGHQTSAESWGTGR.A	2
PARC_cac1phos_04122005-07.01290.01290.2	3.1022	0.3846	1185.11	1185.266	1	1075.4	80.0%	2	R.SGQGAFGNMCR.G	2
PARC_cac1phos_04122005-05.03768.03768.2	5.5034	0.4707	1821.05	1821.127	1	2286.4	66.7%	4	R.YATASAIAATAVASLVLAR.G	2
PARC_cac1phos_04122005-05.03780.03780.3	4.9158	0.5034	1821.35	1821.127	1	1836.1	47.2%	2	R.YATASAIAATAVASLVLAR.G	3
PARC_cac1phos_04122005-07.02546.02546.2	3.9114	0.4444	1327.59	1327.61	1	1985.5	76.9%	4	S.AIAATAVASLVLAR.G	2
PARC_cac1phos_04122005-02.03098.03098.3	4.141	0.3637	1882.94	1882.205	1	1279.7	45.3%	2	K.IPEIPLVVSTDLESIQK.T	3
PARC_cac1phos_04122005-02.03118.03118.2	5.0077	0.5089	1883.15	1882.205	1	878.3	68.8%	11	K.IPEIPLVVSTDLESIQK.T	2
PARC_cac1phos_04122005-05.02394.02394.2	3.3196	0.4042	1672.15	1671.929	1	759.3	60.7%	4	P.EIPLVVSTDLESIQK.T	2
PARC_cac1phos_04122005-05.01384.01384.2	2.5401	0.3026	1224.13	1224.403	1	558.7	62.5%	1	K.EAVAALKAVGAHS.D	2
PARC_cac1phos_04122005-05.03135.03135.2	4.1312	0.426	2615.13	2612.992	1	1177.1	44.0%	4	R.NVPGVETANVASLNLLQLAPGAHLGR.F	2
PARC_cac1phos_04122005-05.03122.03122.2	3.7682	0.3079	2400.77	2399.756	1	930.5	43.5%	1	V.PGVETANVASLNLLQLAPGAHLGR.F	2
PARC_cac1phos_04122005-03.02263.02263.2	3.8263	0.392	1313.47	1313.539	1	1886.9	90.0%	10	R.FVIWTEAAFTK.L	2
PARC_cac1phos_04122005-02.01162.01162.2	4.0132	0.4226	1507.87	1507.64	1	976.4	73.1%	1	K.LDQVWGSETVASSK.V	2
PARC_cac1phos_04122005-07.02986.02986.2	3.0109	0.3611	1847.47	1847.078	1	600.9	53.1%	1	K.VGYTLPSHIISTSDVTR.I	2
PARC_cac1phos_04122005-06.01144.01144.3	5.0091	0.454	2062.91	2062.417	1	1749.1	47.4%	1	K.VFAAEKLGSKKAEKTGTKPA.A	3

ORFP:YDL229W

125

54.3%

613

66602

5.4

SSB1 SGDID:S0002388, Chr IV from 44066-45907

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
	PARC_cac1phos_04122005-05.02188.02188.2	2.7591	0.3363	2176.31	2177.376	2	359.8	34.2%	1	Y.ESSVEIIANEQGNRVTPSFV.A	2 2
	PARC_cac1phos_04122005-02.00726.00726.1	1.8629	0.0591	687.41	687.814	23	401.9	66.7%	1	R.LIGDAAK.N	1 1 1 1 1 1 1 1 1
	PARC_cac1phos_04122005-05.01366.01366.2	4.7292	0.4447	1552.17	1552.774	1	1215.6	75.0%	3	R.LIGDAAKNQAALNPR.N	2 2
	PARC_cac1phos_04122005-06.01084.01084.2	2.9621	0.1352	1154.67	1154.314	1	927.9	75.0%	1	D.AAKNQAALNPR.N	2 2
	PARC_cac1phos_04122005-07.02712.02712.2	5.4638	0.5146	2161.15	2161.414	1	1280.9	63.9%	20	K.VIDVDGNPVIEVQYLEETK.T	2 2
	PARC_cac1phos_04122005-05.02222.02222.2	3.2254	0.3546	1833.93	1834.033	1	575.9	50.0%	1	D.VDGNPVIEVQYLEETK.T	2 2
	PARC_cac1phos_04122005-03.02830.02830.2	2.873	0.2645	2421.55	2422.694	2	291.2	32.5%	1	D.GNPVIEVQYLEETKTFSPQEI.S	2 2
	PARC_cac1phos_04122005-02.02259.02259.2	4.0505	0.2824	1552.57	1552.826	1	1296.0	73.1%	15	K.TFSPQEISAMVLTK.M	2 2
	PARC_cac1phos_04122005-07.01614.01614.2	2.981	0.1002	1071.43	1071.265	1	1018.7	85.0%	1	D.AGAISGLNVLR.I	2 2
	PARC_cac1phos_04122005-03.02686.02686.2	2.7972	0.3254	1880.59	1881.183	4	407.4	38.9%	1	D.AGAISGLNVLRIINEPTAA.A	2 2
	PARC_cac1phos_04122005-03.03088.03088.2	2.8042	0.1851	2064.75	2065.421	1	469.7	37.5%	1	D.AGAISGLNVLRIINEPTAAAI.A	2 2
	PARC_cac1phos_04122005-07.01363.01363.1	1.9478	0.1803	1012.49	1013.179	15	383.0	55.6%	1	R.IINEPTAAAI.A	1 1 1 1 1 1 1 1
	PARC_cac1phos_04122005-02.01882.01882.2	5.6842	0.6057	1730.49	1731.002	1	2105.5	76.5%	8	R.IINEPTAAAIAYGLGAGK.S	2 2
	PARC_cac1phos_04122005-05.03051.03051.2	3.8647	0.4084	2107.01	2105.442	1	1075.3	47.5%	1	D.LGGGTFDVSLLHIAGGVYTVK.S	2 2
	PARC_cac1phos_04122005-07.03711.03711.2	4.1893	0.4443	2965.01	2965.151	1	528.1	32.7%	2	R.TLSSVTQTTVEVDSLFDGEDFESSLTR.A	2 2
	PARC_cac1phos_04122005-07.02936.02936.2	3.2485	0.3155	2148.33	2147.257	1	373.1	36.1%	1	T.TVEVDSLFDGEDFESSLTR.A	2 2
	PARC_cac1phos_04122005-04.01310.01310.2	4.7966	0.1091	1460.77	1460.627	1	1865.2	76.9%	12	K.SQIDEVVLVGGSTR.I	2 2
	PARC_cac1phos_04122005-05.02874.02874.2	4.9451	0.5206	2894.47	2895.106	1	849.5	37.5%	2	K.SINPDEAVAYGAAVQGAILTGQSTSDETK.D	2 2
	PARC_cac1phos_04122005-02.02598.02598.3	5.0016	0.3545	2894.93	2895.106	1	1504.9	29.5%	2	K.SINPDEAVAYGAAVQGAILTGQSTSDETK.D	3 3
	PARC_cac1phos_04122005-02.01036.01036.2	2.7384	0.3217	1833.79	1834.978	3	600.0	44.4%	1	Y.GAAVQGAILTGQSTSDETK.D	2 2
	PARC_cac1phos_04122005-02.00982.00982.2	5.0474	0.4331	1707.07	1706.847	1	1586.9	65.6%	1	A.AVQGAILTGQSTSDETK.D	2 2
	PARC_cac1phos_04122005-02.00986.00986.2	4.9595	0.451	1821.69	1821.936	1	1811.3	67.6%	1	A.AVQGAILTGQSTSDETKD.L	2 2
*	PARC_cac1phos_04122005-03.03188.03188.3	3.5278	0.3365	2144.42	2144.598	1	1284.4	36.2%	1	D.VAPLSLGVGMQGDMFGIVVPR.N	3
*	PARC_cac1phos_04122005-02.02887.02887.2	4.1061	0.4419	1765.69	1764.111	1	1089.0	62.5%	1	L.SLGVGMQGDMFGIVVPR.N	2
*	PARC_cac1phos_04122005-02.01566.01566.2	4.7759	0.5122	2463.61	2464.617	1	1031.4	52.5%	12	R.TFTTCADNQTTVQFPVYQGER.V	2
	PARC_cac1phos_04122005-02.01984.01984.1	2.6842	0.3072	1278.73	1279.433	3	244.3	60.0%	3	K.ENTLLGEFDLK.N	1 1
	PARC_cac1phos_04122005-02.02014.02014.2	3.3058	0.2551	1279.03	1279.433	1	725.1	80.0%	4	K.ENTLLGEFDLK.N	2 2
	PARC_cac1phos_04122005-03.03606.03606.2	3.2126	0.3906	2200.73	2199.672	2	381.6	44.7%	1	D.LKNIPMMPAGEPVLEAIFEV.D	2 2
	PARC_cac1phos_04122005-03.03827.03827.2	4.3887	0.474	2669.83	2670.154	1	874.7	52.1%	3	K.NIPMMPAGEPVLEAIFEVDANGILK.V	2 2
	PARC_cac1phos_04122005-07.01326.01326.2	3.073	0.2983	1218.91	1219.34	1	1404.4	81.8%	3	K.SSNITISNAVGR.L	2 2
	PARC_cac1phos_04122005-05.01299.01299.2	2.9939	0.1106	1432.63	1432.574	4	874.8	62.5%	1	S.NAVGRLSSEEIEK.M	2 2
	PARC_cac1phos_04122005-03.02702.02702.2	5.6147	0.4673	2166.73	2167.418	1	1828.5	71.1%	8	R.LESYVASIEQTVTDPVLSSK.L	2 2
	PARC_cac1phos_04122005-05.03887.03887.2	4.3983	0.4862	1860.43	1859.084	1	1666.7	61.8%	2	K.SKIEAALSDALAALQIED.P	2 2
	PARC_cac1phos_04122005-04.03268.03268.2	4.2429	0.384	2630.57	2627.908	1	912.9	41.7%	1	K.SKIEAALSDALAALQIEDPSADELR.K	2 2
	PARC_cac1phos_04122005-05.03444.03444.3	4.131	0.3202	2757.74	2756.083	1	940.9	30.0%	3	K.SKIEAALSDALAALQIEDPSADELRK.A	3 3
	PARC_cac1phos_04122005-02.03279.03279.2	4.7287	0.3595	2414.97	2412.656	1	1321.2	47.7%	4	K.IEAALSDALAALQIEDPSADELR.K	2 2

Similarities: ORFP:YNL209W(33:3)
ORFP:YLL024C(2:34)
ORFP:YAL005C(2:34)
ORFP:YBL075C(2:34)
ORFP:YER103W(2:34)
GR78_MOUSE(2:34)
GR78_YEAST(1:35)
GR78_HUMAN(2:34)

ORFP:YNL209W

116

54.3%

613

66595

5.5

SSB2 SGDID:S0005153, Chr XIV from 252058-253899

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
	PARC_cac1phos_04122005-05.02188.02188.2	2.7591	0.3363	2176.31	2177.376	2	359.8	34.2%	1	Y.ESSVEIIANEQGNRVTPSFV.A	2 2
	PARC_cac1phos_04122005-02.00726.00726.1	1.8629	0.0591	687.41	687.814	23	401.9	66.7%	1	R.LIGDAAK.N	1 1 1 1 1 1 1 1 1
	PARC_cac1phos_04122005-05.01366.01366.2	4.7292	0.4447	1552.17	1552.774	1	1215.6	75.0%	3	R.LIGDAAKNQAALNPR.N	2 2
	PARC_cac1phos_04122005-06.01084.01084.2	2.9621	0.1352	1154.67	1154.314	1	927.9	75.0%	1	D.AAKNQAALNPR.N	2 2
	PARC_cac1phos_04122005-07.02712.02712.2	5.4638	0.5146	2161.15	2161.414	1	1280.9	63.9%	20	K.VIDVDGNPVIEVQYLEETK.T	2 2
	PARC_cac1phos_04122005-05.02222.02222.2	3.2254	0.3546	1833.93	1834.033	1	575.9	50.0%	1	D.VDGNPVIEVQYLEETK.T	2 2
	PARC_cac1phos_04122005-03.02830.02830.2	2.873	0.2645	2421.55	2422.694	2	291.2	32.5%	1	D.GNPVIEVQYLEETKTFSPQEI.S	2 2
	PARC_cac1phos_04122005-02.02259.02259.2	4.0505	0.2824	1552.57	1552.826	1	1296.0	73.1%	15	K.TFSPQEISAMVLTK.M	2 2
	PARC_cac1phos_04122005-07.01614.01614.2	2.981	0.1002	1071.43	1071.265	1	1018.7	85.0%	1	D.AGAISGLNVLR.I	2 2
	PARC_cac1phos_04122005-03.02686.02686.2	2.7972	0.3254	1880.59	1881.183	4	407.4	38.9%	1	D.AGAISGLNVLRIINEPTAA.A	2 2
	PARC_cac1phos_04122005-03.03088.03088.2	2.8042	0.1851	2064.75	2065.421	1	469.7	37.5%	1	D.AGAISGLNVLRIINEPTAAAI.A	2 2
	PARC_cac1phos_04122005-07.01363.01363.1	1.9478	0.1803	1012.49	1013.179	15	383.0	55.6%	1	R.IINEPTAAAI.A	1 1 1 1 1 1 1 1
	PARC_cac1phos_04122005-02.01882.01882.2	5.6842	0.6057	1730.49	1731.002	1	2105.5	76.5%	8	R.IINEPTAAAIAYGLGAGK.S	2 2
	PARC_cac1phos_04122005-05.03051.03051.2	3.8647	0.4084	2107.01	2105.442	1	1075.3	47.5%	1	D.LGGGTFDVSLLHIAGGVYTVK.S	2 2
	PARC_cac1phos_04122005-07.03711.03711.2	4.1893	0.4443	2965.01	2965.151	1	528.1	32.7%	2	R.TLSSVTQTTVEVDSLFDGEDFESSLTR.A	2 2
	PARC_cac1phos_04122005-07.02936.02936.2	3.2485	0.3155	2148.33	2147.257	1	373.1	36.1%	1	T.TVEVDSLFDGEDFESSLTR.A	2 2
	PARC_cac1phos_04122005-04.01310.01310.2	4.7966	0.1091	1460.77	1460.627	1	1865.2	76.9%	12	K.SQIDEVVLVGGSTR.I	2 2
	PARC_cac1phos_04122005-05.02874.02874.2	4.9451	0.5206	2894.47	2895.106	1	849.5	37.5%	2	K.SINPDEAVAYGAAVQGAILTGQSTSDETK.D	2 2
	PARC_cac1phos_04122005-02.02598.02598.3	5.0016	0.3545	2894.93	2895.106	1	1504.9	29.5%	2	K.SINPDEAVAYGAAVQGAILTGQSTSDETK.D	3 3
	PARC_cac1phos_04122005-02.01036.01036.2	2.7384	0.3217	1833.79	1834.978	3	600.0	44.4%	1	Y.GAAVQGAILTGQSTSDETK.D	2 2
	PARC_cac1phos_04122005-02.00982.00982.2	5.0474	0.4331	1707.07	1706.847	1	1586.9	65.6%	1	A.AVQGAILTGQSTSDETK.D	2 2
	PARC_cac1phos_04122005-02.00986.00986.2	4.9595	0.451	1821.69	1821.936	1	1811.3	67.6%	1	A.AVQGAILTGQSTSDETKD.L	2 2
*	PARC_cac1phos_04122005-03.03330.03330.2	3.9753	0.4056	2126.35	2126.565	1	1119.8	50.0%	1	D.VAPLSLGVGMQGDIFGIVVPR.N	2
*	PARC_cac1phos_04122005-02.01656.01656.2	4.4658	0.4394	2418.23	2419.61	1	701.7	42.5%	4	R.TFTTVSDNQTTVQFPVYQGER.V	2
	PARC_cac1phos_04122005-02.01984.01984.1	2.6842	0.3072	1278.73	1279.433	3	244.3	60.0%	3	K.ENTLLGEFDLK.N	1 1
	PARC_cac1phos_04122005-02.02014.02014.2	3.3058	0.2551	1279.03	1279.433	1	725.1	80.0%	4	K.ENTLLGEFDLK.N	2 2
	PARC_cac1phos_04122005-03.03606.03606.2	3.2126	0.3906	2200.73	2199.672	2	381.6	44.7%	1	D.LKNIPMMPAGEPVLEAIFEV.D	2 2
	PARC_cac1phos_04122005-03.03827.03827.2	4.3887	0.474	2669.83	2670.154	1	874.7	52.1%	3	K.NIPMMPAGEPVLEAIFEVDANGILK.V	2 2
	PARC_cac1phos_04122005-07.01326.01326.2	3.073	0.2983	1218.91	1219.34	1	1404.4	81.8%	3	K.SSNITISNAVGR.L	2 2
	PARC_cac1phos_04122005-05.01299.01299.2	2.9939	0.1106	1432.63	1432.574	4	874.8	62.5%	1	S.NAVGRLSSEEIEK.M	2 2
	PARC_cac1phos_04122005-03.02702.02702.2	5.6147	0.4673	2166.73	2167.418	1	1828.5	71.1%	8	R.LESYVASIEQTVTDPVLSSK.L	2 2
	PARC_cac1phos_04122005-05.03887.03887.2	4.3983	0.4862	1860.43	1859.084	1	1666.7	61.8%	2	K.SKIEAALSDALAALQIED.P	2 2
	PARC_cac1phos_04122005-04.03268.03268.2	4.2429	0.384	2630.57	2627.908	1	912.9	41.7%	1	K.SKIEAALSDALAALQIEDPSADELR.K	2 2
	PARC_cac1phos_04122005-05.03444.03444.3	4.131	0.3202	2757.74	2756.083	1	940.9	30.0%	3	K.SKIEAALSDALAALQIEDPSADELRK.A	3 3
	PARC_cac1phos_04122005-02.03279.03279.2	4.7287	0.3595	2414.97	2412.656	1	1321.2	47.7%	4	K.IEAALSDALAALQIEDPSADELR.K	2 2

Similarities: ORFP:YDL229W(33:2)
ORFP:YLL024C(2:33)
ORFP:YAL005C(2:33)
ORFP:YBL075C(2:33)
ORFP:YER103W(2:33)
GR78_MOUSE(2:33)
GR78_YEAST(1:34)
GR78_HUMAN(2:33)

ORFP:YJL191W

51.4%

138

14650

10.5

RPS14B SGDID:S0003727, Chr X from 73786-73795,74204-74610

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	PARC_cac1phos_04122005-07.01498.01498.2	4.7704	0.5164	1889.81	1890.066	1	1289.2	65.6%	2	A.NDLVQARDNSQVFGVAR.I	2
	PARC_cac1phos_04122005-05.02504.02504.2	4.8214	0.5132	2014.91	2015.23	1	1453.2	55.9%	10	R.IYASFNDTFVHVTDLSGK.E	2 2
	PARC_cac1phos_04122005-02.01706.01706.2	5.253	0.3978	1839.63	1839.027	1	1710.8	64.7%	4	R.DESSPYAAMLAAQDVAAK.C	2 2
	PARC_cac1phos_04122005-05.01942.01942.2	4.2315	0.5386	1723.31	1723.938	1	1275.8	56.2%	1	D.ESSPYAAMLAAQDVAAK.C	2 2
	PARC_cac1phos_04122005-05.01262.01262.2	3.1351	0.1926	1018.23	1018.216	1	1070.2	94.4%	1	A.MLAAQDVAAK.C	2 2
	PARC_cac1phos_04122005-05.01292.01292.2	3.1229	0.1408	1305.81	1306.529	1	1038.9	68.2%	1	A.MLAAQDVAAKCK.E	2 2
	PARC_cac1phos_04122005-05.01442.01442.2	3.4143	0.3943	1741.83	1742.927	2	558.5	50.0%	1	R.IGRIEDVTPVPSDSTR.K	2 2
	PARC_cac1phos_04122005-02.00950.00950.2	3.539	0.335	1416.17	1416.528	1	675.8	70.8%	1	R.IEDVTPVPSDSTR.K	2 2

Similarities: ORFP:YCR031C(7:1)

ORFP:YLR048W

50.0%

252

27962

4.7

RPS0B SGDID:S0004038, Chr XII from 242233-242322,242682-243350

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
	PARC_cac1phos_04122005-02.03442.03442.3	5.0883	0.4348	2538.44	2536.847	1	1025.8	33.7%	1	L.PATFDLTPEDAQLLLAANTHLGAR.N	3 3
	PARC_cac1phos_04122005-02.02142.02142.2	2.9278	0.4471	1765.51	1766.048	1	503.4	65.6%	4	R.IIAAIPNPEDVVAISSR.T	2 2
	PARC_cac1phos_04122005-02.02168.02168.1	2.5378	0.2528	1283.49	1284.412	2	377.6	54.5%	1	I.PNPEDVVAISSR.T	1 1
	PARC_cac1phos_04122005-02.03171.03171.2	3.5542	0.3767	2245.45	2245.578	1	436.9	42.5%	2	D.AQAIKEASYVNIPVIALTDLD.S	2 2
	PARC_cac1phos_04122005-02.01831.01831.2	2.8267	0.177	1933.59	1934.079	2	409.9	43.8%	2	D.LDSPSEFVDVAIPCNNR.G	2 2
	PARC_cac1phos_04122005-03.03150.03150.2	3.6665	0.4638	1818.07	1818.1	1	720.0	69.2%	7	R.TQPWSIMPDLYFYR.N	2 2
*	PARC_cac1phos_04122005-05.03766.03766.3	5.2792	0.3675	3910.07	3909.931	1	1723.1	25.0%	3	A.AAAEEGEEEEVKEEVTEGQAEATEWAEENADNVEW.-	3
*	PARC_cac1phos_04122005-02.01043.01043.2	3.9682	0.4944	1850.29	1850.841	1	930.5	63.3%	1	A.EEGEEEEVKEEVTEGQ.A	2

Similarities: ORFP:YGR214W(6:2)

ORFP:YGR214W

49.6%

252

28024

4.7

RPS0A SGDID:S0003446, Chr VII from 920577-920666,921122-921790

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
	PARC_cac1phos_04122005-02.03442.03442.3	5.0883	0.4348	2538.44	2536.847	1	1025.8	33.7%	1	L.PATFDLTPEDAQLLLAANTHLGAR.N	3 3
	PARC_cac1phos_04122005-02.02142.02142.2	2.9278	0.4471	1765.51	1766.048	1	503.4	65.6%	4	R.IIAAIPNPEDVVAISSR.T	2 2
	PARC_cac1phos_04122005-02.02168.02168.1	2.5378	0.2528	1283.49	1284.412	2	377.6	54.5%	1	I.PNPEDVVAISSR.T	1 1
	PARC_cac1phos_04122005-02.03171.03171.2	3.5542	0.3767	2245.45	2245.578	1	436.9	42.5%	2	D.AQAIKEASYVNIPVIALTDLD.S	2 2
	PARC_cac1phos_04122005-02.01831.01831.2	2.8267	0.177	1933.59	1934.079	2	409.9	43.8%	2	D.LDSPSEFVDVAIPCNNR.G	2 2
	PARC_cac1phos_04122005-03.03150.03150.2	3.6665	0.4638	1818.07	1818.1	1	720.0	69.2%	7	R.TQPWSIMPDLYFYR.D	2 2
*	PARC_cac1phos_04122005-05.02182.02182.3	4.647	0.3989	3751.13	3750.781	1	1013.9	25.8%	1	D.PEEVEQQVAEEATTEEAGEEEAKEEVTEEQAEAT.E	3

Similarities: ORFP:YLR048W(6:1)

ORFP:YDL081C

49.1%

106

10908

3.9

RPP1A SGDID:S0002239, Chr IV from 310121-309801, reverse complement

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	PARC_cac1phos_04122005-05.04503.04503.3	3.8951	0.2866	3605.09	3602.119	1	448.6	21.9%	1	D.SEIEISSEKLLTLTNAANVPVENIWADIFAKAL.D	3
*	PARC_cac1phos_04122005-02.03739.03739.2	4.0647	0.4603	2414.33	2414.807	1	334.7	42.9%	4	K.LLTLTNAANVPVENIWADIFAK.A	2
*	PARC_cac1phos_04122005-02.02658.02658.2	3.2755	0.4411	1857.45	1858.104	1	699.4	44.4%	5	D.GQNLKDLLVNFSAGAAAPA.G	2

U	ORFP:YNL302C	7	12	45.1%	144	15891	9.6	RPS19B SGDID:S0005246, Chr XIV from 62942-62923,62371-61957, reverse complement
U	ORFP:YOL121C	7	12	45.1%	144	15917	9.6	RPS19A SGDID:S0005481, Chr XV from 92849-92830,92439-92025, reverse complement

Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
PARC_cac1phos_04122005-05.03886.03886.2	4.9161	0.5411	1930.63	1930.127	1	1940.4	62.5%	3	R.DVAAQDFINAYASFLQR.Q	2
PARC_cac1phos_04122005-02.01636.01636.2	3.2089	0.2956	2044.33	2045.187	1	289.1	47.1%	4	K.TSSGNEMPPQDAEGWFYK.R	2
PARC_cac1phos_04122005-05.01255.01255.1	2.0166	0.0306	800.73	800.974	10	423.8	66.7%	1	K.VLQALEK.I	1
PARC_cac1phos_04122005-05.01518.01518.1	2.4239	0.168	955.69	956.17	1	686.7	75.0%	1	K.IGIVEISPK.G	1
PARC_cac1phos_04122005-05.01520.01520.2	2.9463	0.2002	956.03	956.17	1	1122.7	93.8%	1	K.IGIVEISPK.G	2
PARC_cac1phos_04122005-05.01746.01746.2	3.4672	0.2271	1489.41	1489.579	2	1088.3	58.3%	1	R.DLDRIAAQTLEED.E	2
PARC_cac1phos_04122005-05.01878.01878.2	4.2208	0.4319	1619.35	1618.695	1	1495.7	73.1%	1	R.DLDRIAAQTLEEDE.-	2

U	ORFP:YDR447C	8	19	42.6%	136	15803	10.5	RPS17B SGDID:S0002855, Chr IV from 1355541-1355539,1355224-1354817, reverse complement
U	ORFP:YML024W	8	19	42.6%	136	15788	10.5	RPS17A SGDID:S0004486, Chr XIII from 225889-225891,226290-226697

Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
PARC_cac1phos_04122005-02.01072.01072.2	3.7028	0.3373	1278.29	1278.411	1	1420.5	85.0%	2	R.LCDEIATIQSK.R	2
PARC_cac1phos_04122005-02.01666.01666.2	4.3925	0.3553	1593.49	1592.746	1	1091.9	84.6%	6	K.DQYVPEVSALDLSR.S	2
PARC_cac1phos_04122005-02.01698.01698.1	2.246	0.278	1086.57	1087.218	5	315.1	61.1%	1	V.PEVSALDLSR.S	1
PARC_cac1phos_04122005-03.02738.02738.2	2.7233	0.2575	2559.61	2559.836	5	305.3	26.1%	1	S.ALDLSRSNGVLNVDNQTSDLVKSL.G	2
PARC_cac1phos_04122005-05.01510.01510.2	3.8204	0.3323	1703.53	1703.847	1	883.0	63.3%	4	R.SNGVLNVDNQTSDLVK.S	2
PARC_cac1phos_04122005-05.01524.01524.2	3.2058	0.3345	1502.09	1502.665	1	607.9	57.7%	1	N.GVLNVDNQTSDLVK.S	2
PARC_cac1phos_04122005-03.02260.02260.2	2.7386	0.2065	939.85	940.214	2	755.4	81.2%	1	L.GLKLPLSVI.N	2
PARC_cac1phos_04122005-03.01615.01615.2	3.6052	0.4025	1297.45	1297.541	1	1528.6	81.8%	3	K.LPLSVINVSAQR.D	2

ORFP:YJR009C

103

42.5%

332

35847

7.0

TDH2 SGDID:S0003769, Chr X from 454374-453376, reverse complement

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
	PARC_cac1phos_04122005-07.03171.03171.2	3.2385	0.3094	1089.53	1089.286	1	1403.5	83.3%	1	M.VRVAINGFGR.I	2 2
*	PARC_cac1phos_04122005-02.03262.03262.2	3.0877	0.2098	2536.63	2537.846	2	411.3	38.1%	2	K.NVEVVALNDPFISNDYSAYMFK.Y	2
	PARC_cac1phos_04122005-03.02148.02148.2	2.9081	0.0062	1679.31	1680.074	2	644.8	50.0%	2	K.KVVITAPSSTAPMFVM.G	2 2
	PARC_cac1phos_04122005-02.01974.01974.2	5.214	0.5655	2207.65	2208.593	1	1014.2	60.0%	14	K.VVITAPSSTAPMFVMGVNEEK.Y	2 2
	PARC_cac1phos_04122005-02.02034.02034.3	4.4698	0.4451	2208.32	2208.593	1	1326.6	37.5%	4	K.VVITAPSSTAPMFVMGVNEEK.Y	3 3
	PARC_cac1phos_04122005-02.01207.01207.2	3.7709	0.434	1821.35	1821.013	1	899.0	56.2%	2	K.IVSNASCTTNCLAPLAK.V	2 2 2
	PARC_cac1phos_04122005-04.02535.02535.2	4.573	0.4837	1847.59	1847.093	1	2132.4	68.8%	4	K.VINDAFGIEEGLMTTVH.S	2 2 2
	PARC_cac1phos_04122005-07.03574.03574.2	4.1076	0.4201	2594.01	2594.958	1	485.1	32.6%	1	K.VINDAFGIEEGLMTTVHSMTATQK.T	2 2
	PARC_cac1phos_04122005-05.01307.01307.2	4.2977	0.511	1645.75	1645.813	1	628.2	58.8%	1	R.GGRTASGNIIPSSTGAAK.A	2 2 2
	PARC_cac1phos_04122005-07.01287.01287.2	3.0109	0.3614	1375.01	1375.522	2	479.6	60.7%	3	R.TASGNIIPSSTGAAK.A	2 2 2
	PARC_cac1phos_04122005-05.02214.02214.1	2.2532	0.3682	1470.59	1471.734	1	706.3	57.7%	3	R.VPTVDVSVVDLTVK.L	1 1 1
	PARC_cac1phos_04122005-04.01726.01726.2	4.4309	0.4728	1471.37	1471.734	1	1336.2	73.1%	63	R.VPTVDVSVVDLTVK.L	2 2 2
	PARC_cac1phos_04122005-02.01584.01584.2	3.0343	0.366	1754.05	1753.865	4	588.3	50.0%	3	K.LVSWYDNEYGYSTR.V	2 2

Similarities: ORFP:YGR192C(11:2)
ORFP:YJL052W(7:6)

ORFP:YLR061W

41.3%

121

13693

6.2

RPL22A SGDID:S0004051, Chr XII from 263195-263206,263596-263949

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	PARC_cac1phos_04122005-02.02210.02210.2	4.9444	0.4576	2333.97	2333.513	1	1073.5	52.4%	5	K.TFTVDVSSPTENGVFDPASYAK.Y	2
*	PARC_cac1phos_04122005-05.02498.02498.2	4.9444	0.438	2688.61	2688.992	1	774.3	42.6%	5	K.VEGAVGNLGNAVTVTEDGTVVTVVSTAK.F	2

U	ORFP:YDL075W	7	21	39.8%	113	12953	10.0	RPL31A SGDID:S0002233, Chr IV from 322225-322281,322703-322987
U	ORFP:YLR406C	7	21	39.8%	113	12967	10.0	RPL31B SGDID:S0004398, Chr XII from 931752-931696,931346-931062, reverse complement

Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
PARC_cac1phos_04122005-07.01306.01306.2	2.8503	0.2205	960.51	959.134	2	692.9	81.2%	2	M.AGLKDVVTR.E	2
PARC_cac1phos_04122005-06.00254.00254.3	5.6366	0.3675	2834.33	2835.186	1	2080.0	39.6%	4	R.KRNEEEDAKNPLFSYVEPVLVASAK.G	3
PARC_cac1phos_04122005-03.02799.02799.2	4.5207	0.4261	2549.37	2550.825	1	946.8	47.7%	3	R.NEEEDAKNPLFSYVEPVLVASAK.G	2
PARC_cac1phos_04122005-03.02887.02887.2	2.6184	0.2533	1648.01	1647.955	4	649.3	50.0%	1	D.AKNPLFSYVEPVLVA.S	2
PARC_cac1phos_04122005-04.02983.02983.2	3.7511	0.2955	1933.97	1934.286	1	976.4	50.0%	4	D.AKNPLFSYVEPVLVASAK.G	2
PARC_cac1phos_04122005-02.03010.03010.2	4.5889	0.4678	1734.79	1735.033	1	1790.3	70.0%	5	K.NPLFSYVEPVLVASAK.G	2
PARC_cac1phos_04122005-04.01134.01134.1	1.9956	0.2212	1159.55	1160.266	56	318.1	45.0%	2	K.GLQTVVVEEDA.-	1

ORFP:YCR031C

39.4%

137

14537

10.7

RPS14A SGDID:S0000627, Chr III from 178212-178206,177898-177492, reverse complement

Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
PARC_cac1phos_04122005-05.02504.02504.2	4.8214	0.5132	2014.91	2015.23	1	1453.2	55.9%	10	R.IYASFNDTFVHVTDLSGK.E	2 2
PARC_cac1phos_04122005-02.01706.01706.2	5.253	0.3978	1839.63	1839.027	1	1710.8	64.7%	4	R.DESSPYAAMLAAQDVAAK.C	2 2
PARC_cac1phos_04122005-05.01942.01942.2	4.2315	0.5386	1723.31	1723.938	1	1275.8	56.2%	1	D.ESSPYAAMLAAQDVAAK.C	2 2
PARC_cac1phos_04122005-05.01262.01262.2	3.1351	0.1926	1018.23	1018.216	1	1070.2	94.4%	1	A.MLAAQDVAAK.C	2 2
PARC_cac1phos_04122005-05.01292.01292.2	3.1229	0.1408	1305.81	1306.529	1	1038.9	68.2%	1	A.MLAAQDVAAKCK.E	2 2
PARC_cac1phos_04122005-05.01442.01442.2	3.4143	0.3943	1741.83	1742.927	2	558.5	50.0%	1	R.IGRIEDVTPVPSDSTR.K	2 2
PARC_cac1phos_04122005-02.00950.00950.2	3.539	0.335	1416.17	1416.528	1	675.8	70.8%	1	R.IEDVTPVPSDSTR.K	2 2

Similarities: ORFP:YJL191W(7:0)

U	ORFP:YBL003C	6	18	39.4%	132	13989	10.7	HTA2 SGDID:S0000099, Chr II from 235754-235356, reverse complement
U	ORFP:YDR225W	6	18	39.4%	132	13989	10.7	HTA1 SGDID:S0002633, Chr IV from 915521-915919

Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
PARC_cac1phos_04122005-07.05155.05155.3	5.4363	0.4391	2946.44	2947.401	1	1339.5	30.4%	1	R.IGSGAPVYLTAVLEYLAAEILELAGNAAR.D	3
PARC_cac1phos_04122005-05.05427.05427.2	5.7934	0.486	2946.89	2947.401	1	1535.6	42.9%	4	R.IGSGAPVYLTAVLEYLAAEILELAGNAAR.D	2
PARC_cac1phos_04122005-05.04668.04668.2	5.1005	0.423	1987.51	1988.291	1	2281.3	75.0%	2	T.AVLEYLAAEILELAGNAAR.D	2
PARC_cac1phos_04122005-07.04475.04475.3	4.8874	0.4951	1988.09	1988.291	1	1490.9	43.1%	1	T.AVLEYLAAEILELAGNAAR.D	3
PARC_cac1phos_04122005-05.02731.02731.2	4.9301	0.5235	2409.37	2410.866	1	1162.5	50.0%	6	K.LLGNVTIAQGGVLPNIHQNLLPK.K	2
PARC_cac1phos_04122005-05.02658.02658.3	5.1711	0.4486	2411.24	2410.866	1	1637.5	42.0%	4	K.LLGNVTIAQGGVLPNIHQNLLPK.K	3

U	ORFP:YBR118W	17	97	38.6%	458	50033	9.0	TEF2 SGDID:S0000322, Chr II from 477626-479002
U	ORFP:YPR080W	17	97	38.6%	458	50033	9.0	TEF1 SGDID:S0006284, Chr XVI from 700590-701966

Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
PARC_cac1phos_04122005-05.02872.02872.2	5.4948	0.4912	1561.49	1561.781	1	2296.2	82.1%	15	K.SHINVVVIGHVDSGK.S	2
PARC_cac1phos_04122005-05.04347.04347.2	5.3797	0.4696	2924.07	2925.29	1	946.6	41.1%	2	K.NMITGTSQADCAILIIAGGVGEFEAGISK.D	2
PARC_cac1phos_04122005-05.04346.04346.3	5.6254	0.4098	2924.93	2925.29	1	920.6	28.6%	2	K.NMITGTSQADCAILIIAGGVGEFEAGISK.D	3
PARC_cac1phos_04122005-02.01762.01762.2	3.8655	0.4415	1449.13	1448.659	1	1418.3	75.0%	1	L.IIAGGVGEFEAGISK.D	2
PARC_cac1phos_04122005-02.03331.03331.2	2.8099	0.3285	2709.91	2710.036	1	391.6	34.8%	1	V.PFVPISGWNGDNMIEATTNAPWYK.G	2
PARC_cac1phos_04122005-07.02615.02615.2	4.1458	0.4306	1869.83	1870.067	1	793.8	50.0%	1	K.TLLEAIDAIEQPSRPTD.K	2
PARC_cac1phos_04122005-05.02822.02822.3	5.1598	0.437	2474.06	2473.875	1	1288.9	38.1%	9	L.LEAIDAIEQPSRPTDKPLRLPL.Q	3
PARC_cac1phos_04122005-03.01304.01304.2	3.2479	0.2809	1026.55	1026.224	1	1336.6	90.0%	7	K.IGGIGTVPVGR.V	2
PARC_cac1phos_04122005-05.01612.01612.2	3.9643	0.3229	1229.27	1229.521	4	1107.6	72.7%	1	R.VETGVIKPGMVV.T	2
PARC_cac1phos_04122005-03.02935.02935.2	5.4215	0.4962	2430.99	2431.893	1	586.9	47.8%	23	R.VETGVIKPGMVVTFAPAGVTTEVK.S	2
PARC_cac1phos_04122005-03.02814.02814.3	5.109	0.4074	2431.85	2431.893	1	1019.7	38.0%	13	R.VETGVIKPGMVVTFAPAGVTTEVK.S	3
PARC_cac1phos_04122005-05.01335.01335.2	2.7151	0.225	1119.93	1120.291	1	523.3	90.0%	1	T.FAPAGVTTEVK.S	2
PARC_cac1phos_04122005-05.01326.01326.2	2.8833	0.2572	1792.25	1792.918	2	318.8	53.3%	2	K.SVEMHHEQLEQGVPGD.N	2
PARC_cac1phos_04122005-04.02971.02971.2	3.2266	0.3719	2311.99	2312.655	1	487.9	44.7%	16	K.FVPSKPMCVEAFSEYPPLGR.F	2
PARC_cac1phos_04122005-04.02968.02968.2	2.6872	0.2297	2065.93	2066.345	1	760.7	44.1%	1	V.PSKPMCVEAFSEYPPLGR.F	2
PARC_cac1phos_04122005-05.01563.01563.2	3.0543	0.3998	1266.45	1266.396	1	815.3	80.0%	1	V.EAFSEYPPLGR.F	2
PARC_cac1phos_04122005-05.01106.01106.2	2.8127	0.2375	1414.41	1414.735	1	889.7	61.5%	1	K.AAKVTKAAQKAAKK.-	2

ORFP:YNL067W

37.2%

191

21657

9.7

RPL9B SGDID:S0005011, Chr XIV from 499678-500253

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	PARC_cac1phos_04122005-02.01855.01855.2	4.4185	0.3887	2177.21	2176.472	1	469.6	50.0%	5	K.YIQTEQQIEIPEGVTVSIK.S	2
	PARC_cac1phos_04122005-04.03100.03100.2	4.7094	0.4495	1806.75	1807.102	1	876.8	71.4%	14	R.YVYAHFPINVNIVEK.D	2 2
	PARC_cac1phos_04122005-02.01380.01380.2	2.5133	0.301	1311.01	1310.447	1	835.4	63.6%	1	R.DGVTIEFSTNVK.D	2 2
	PARC_cac1phos_04122005-05.02383.02383.3	4.0678	0.4292	2763.35	2761.926	1	939.5	29.2%	1	K.DEIVLSGNSVEDVSQNAADLQQICR.V	3 3

Similarities: ORFP:YGL147C(3:1)

ORFP:YGL147C

37.2%

191

21569

9.7

RPL9A SGDID:S0003115, Chr VII from 228332-227757, reverse complement

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	PARC_cac1phos_04122005-02.01750.01750.2	5.3875	0.4318	2161.99	2162.445	1	892.7	63.9%	16	K.YIQTEQQIEVPEGVTVSIK.S	2
	PARC_cac1phos_04122005-04.03100.03100.2	4.7094	0.4495	1806.75	1807.102	1	876.8	71.4%	14	R.YVYAHFPINVNIVEK.D	2 2
	PARC_cac1phos_04122005-02.01380.01380.2	2.5133	0.301	1311.01	1310.447	1	835.4	63.6%	1	R.DGVTIEFSTNVK.D	2 2
	PARC_cac1phos_04122005-05.02383.02383.3	4.0678	0.4292	2763.35	2761.926	1	939.5	29.2%	1	K.DEIVLSGNSVEDVSQNAADLQQICR.V	3 3

Similarities: ORFP:YNL067W(3:1)

ORFP:YDR064W

36.4%

151

17029

10.4

RPS13 SGDID:S0002471, Chr IV from 579453-579473,580013-580447

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	PARC_cac1phos_04122005-05.01382.01382.2	3.0855	0.3713	1137.89	1138.266	1	837.5	80.0%	1	K.GISSSAIPYSR.N	2
*	PARC_cac1phos_04122005-05.02171.02171.2	4.2691	0.3252	1332.55	1332.537	2	1225.9	81.8%	4	K.LSSESVIEQIVK.Y	2
*	PARC_cac1phos_04122005-03.02132.02132.2	2.9	0.3527	1254.65	1254.516	2	539.0	68.2%	3	K.GLTPSQIGVLLR.D	2
*	PARC_cac1phos_04122005-05.01564.01564.2	2.8642	0.2274	1496.39	1496.701	1	669.9	61.5%	1	R.ILKSNGLAPEIPED.L	2
*	PARC_cac1phos_04122005-02.02863.02863.2	2.5707	0.0391	1824.73	1823.053	1	466.6	50.0%	2	L.KSNGLAPEIPEDLYYL.I	2
*	PARC_cac1phos_04122005-02.03246.03246.2	3.2745	0.2631	1935.33	1936.212	1	567.5	59.4%	6	K.SNGLAPEIPEDLYYLIK.K	2
*	PARC_cac1phos_04122005-02.03283.03283.2	3.1046	0.2463	1736.07	1735.03	1	430.7	60.7%	1	N.GLAPEIPEDLYYLIK.K	2

ORFP:YOR096W

36.3%

190

21622

9.8

RPS7A SGDID:S0005622, Chr XV from 505794-505937,506339-506767

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	PARC_cac1phos_04122005-07.04207.04207.3	6.0175	0.4851	3086.72	3085.478	1	1615.3	37.0%	3	K.ILSQAPTELELQVAQAFVELENSSPELK.A	3
*	PARC_cac1phos_04122005-05.03074.03074.2	2.7725	0.2835	1669.15	1668.035	17	261.3	46.7%	1	K.ALAIFVPVPSLAGFHK.V	2
*	PARC_cac1phos_04122005-02.02735.02735.2	4.0081	0.2864	1574.63	1573.87	1	748.5	69.2%	5	K.ILEDLVFPTEIVGK.R	2
*	PARC_cac1phos_04122005-07.01896.01896.2	2.7365	0.1921	1301.03	1300.454	2	629.0	65.0%	1	K.QIVFEIPSETH.-	2

U	ORFP:YFR031C-A	8	35	35.8%	254	27408	11.1	RPL2A SGDID:S0002104, Chr VI from 221406-221403,221255-220495, reverse complement
U	ORFP:YIL018W	8	35	35.8%	254	27408	11.1	RPL2B SGDID:S0001280, Chr IX from 316766-316769,317170-317930

Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
PARC_cac1phos_04122005-06.01220.01220.2	2.7658	0.28	1173.35	1173.401	1	871.4	75.0%	1	R.GAPLAKVVFRD.P	2
PARC_cac1phos_04122005-05.03147.03147.3	4.3204	0.4082	2495.36	2493.825	1	1383.9	33.3%	1	R.LREEIFIANEGVHTGQFIYAGK.K	3
PARC_cac1phos_04122005-07.02810.02810.2	3.164	0.2948	2065.07	2065.418	1	440.6	37.5%	1	K.KASLNVGNVLPLGSVPEGTIV.S	2
PARC_cac1phos_04122005-05.02823.02823.3	5.7899	0.4572	3176.96	3177.582	1	1234.3	27.5%	22	K.KASLNVGNVLPLGSVPEGTIVSNVEEKPGDR.G	3
PARC_cac1phos_04122005-03.02495.02495.3	4.1178	0.2194	3049.67	3049.408	1	416.2	25.0%	7	K.ASLNVGNVLPLGSVPEGTIVSNVEEKPGDR.G	3
PARC_cac1phos_04122005-05.01655.01655.2	3.2642	0.3317	1470.85	1470.625	4	664.8	50.0%	1	R.ASGNYVIIIGHNPD.E	2
PARC_cac1phos_04122005-05.01483.01483.1	2.3993	0.2127	955.69	956.133	10	249.2	55.0%	1	R.GVIGVIAGGGR.V	1
PARC_cac1phos_04122005-05.01598.01598.2	3.5662	0.4223	1171.23	1170.354	1	1390.6	79.2%	1	R.GVIGVIAGGGRVD.K	2

U	ORFP:YBL087C	3	21	33.6%	137	14473	10.3	RPL23A SGDID:S0000183, Chr II from 60732-60691,60186-59815, reverse complement
U	ORFP:YER117W	3	21	33.6%	137	14473	10.3	RPL23B SGDID:S0000919, Chr V from 396765-396806,397278-397649

Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
PARC_cac1phos_04122005-02.02410.02410.2	4.2157	0.3936	2017.75	2017.274	1	1242.7	63.2%	9	R.ISLGLPVGAIMNCADNSGAR.N	2
PARC_cac1phos_04122005-07.02688.02688.2	4.437	0.5483	1504.35	1504.843	1	1278.0	71.4%	11	R.LPAASLGDMVMATVK.K	2
PARC_cac1phos_04122005-06.01190.01190.2	2.7632	0.3019	1212.33	1212.539	2	332.0	70.0%	1	K.VMPAIVVRQAK.S	2

KERATIN13

33.1%

643

65494

6.6

no description

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	PARC_cac1phos_04122005-05.02031.02031.2	3.6197	0.1664	1798.75	1796.935	2	610.3	45.0%	2	G.AGGGFGSRSLAGSGGSIASIS.G	2
*	PARC_cac1phos_04122005-02.02456.02456.2	4.4296	0.4194	2293.11	2293.623	1	542.3	50.0%	2	V.TINQSLLQPLNVEIDPEIQK.V	2
*	PARC_cac1phos_04122005-05.01114.01114.2	2.9699	0.1172	1084.23	1085.292	1	1267.7	93.8%	2	D.PEIQKVKSR.E	2
	PARC_cac1phos_04122005-02.01106.01106.2	4.5403	0.08	1476.19	1476.673	1	2728.2	90.9%	4	R.FLEQQNQVLQTK.W	2 2
*	PARC_cac1phos_04122005-05.01996.01996.2	3.3252	0.3117	1476.47	1476.629	1	1664.6	72.7%	1	K.WELLQQVDTSTR.T	2
*	PARC_cac1phos_04122005-04.03008.03008.3	4.1969	0.3822	1995.35	1995.202	2	1143.5	43.3%	2	R.THNLEPYFESFINNLR.R	3
*	PARC_cac1phos_04122005-04.03182.03182.2	4.2863	0.4584	1995.83	1995.202	1	678.9	63.3%	16	R.THNLEPYFESFINNLR.R	2
	PARC_cac1phos_04122005-04.00566.00566.2	2.9942	0.1865	1309.37	1309.422	1	984.1	72.2%	1	R.NKYEDEINKR.T	2 2 2 2
*	PARC_cac1phos_04122005-02.01187.01187.2	3.2413	0.3412	1266.51	1266.393	1	848.5	70.0%	2	R.TNAENEFVTIK.K	2
*	PARC_cac1phos_04122005-05.04798.04798.3	4.9358	0.5053	4530.74	4530.035	1	894.4	21.7%	1	K.LDNLQQEIDFLTALYQAELSQMQTQISETNVILSMDNNR.Q	3
	PARC_cac1phos_04122005-02.02702.02702.1	2.032	0.0080	1103.81	1103.258	190	363.8	50.0%	1	F.DLDSIIAEVK.A	1 1 1 1 1
*	PARC_cac1phos_04122005-02.00887.00887.2	3.7135	0.416	1125.77	1126.208	1	1409.9	88.9%	1	K.AEAESLYQSK.Y	2
*	PARC_cac1phos_04122005-02.01156.01156.2	3.7388	0.4344	1180.35	1180.303	1	1931.9	94.4%	1	K.YEELQITAGR.H	2
*	PARC_cac1phos_04122005-02.01288.01288.2	4.1682	0.5455	1717.43	1717.833	1	1106.3	64.3%	3	K.QISNLQQSISDAEQR.G	2
*	PARC_cac1phos_04122005-02.01364.01364.2	4.3187	0.2645	1359.19	1358.491	1	1926.7	81.8%	2	K.LNDLEDALQQAK.E	2
*2	PARC_cac1phos_04122005-04.02194.02194.2	4.4698	0.3319	1278.63	1278.491	1	2323.9	90.0%	24	K.LALDLEIATYR.T	2 2 2 2
*2	PARC_cac1phos_04122005-05.02387.02387.1	2.633	0.1668	1279.1	1278.491	23	256.3	55.0%	1	K.LALDLEIATYR.T	1 1 1 1
*2	PARC_cac1phos_04122005-05.01362.01362.1	1.8968	0.0764	865.43	866.005	3	309.5	83.3%	1	D.LEIATYR.T	1 1 1 1

Similarities: KERATIN22(2:16)
KERATIN21(2:16)
KERATIN16(3:15)
KERATIN18(1:17)
KERATIN17(2:16)
KERATIN20(4:14)
KERATIN19(3:15)

ORFP:YDR382W

32.7%

110

11050

4.1

RPP2B SGDID:S0002790, Chr IV from 1239480-1239812

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	PARC_cac1phos_04122005-04.02870.02870.2	5.2458	0.5027	2219.99	2220.574	1	1375.9	61.9%	5	K.YLAAYLLLVQGGNAAPSAADIK.A	2
*	PARC_cac1phos_04122005-02.01078.01078.2	3.2522	0.2865	1430.67	1431.543	1	1094.1	73.1%	1	K.AVVESVGAEVDEAR.I	2

ORFP:YOL127W

31.7%

142

15758

10.1

RPL25 SGDID:S0005487, Chr XV from 80347-80359,80774-81189

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	PARC_cac1phos_04122005-02.01047.01047.2	3.7775	0.3417	1447.51	1447.687	1	971.0	83.3%	3	K.VIEQPITSETAMK.K	2
*	PARC_cac1phos_04122005-05.02588.02588.2	3.1209	0.3875	1707.49	1708.026	1	847.9	57.1%	1	K.KVEDGNILVFQVSMK.A	2
*	PARC_cac1phos_04122005-05.02447.02447.2	3.5386	0.377	1579.09	1579.852	1	1198.0	65.4%	2	K.VEDGNILVFQVSMK.A	2
*	PARC_cac1phos_04122005-07.01694.01694.2	4.519	0.4294	1451.27	1451.576	1	2005.5	83.3%	3	R.LTADYDALDIANR.I	2
*	PARC_cac1phos_04122005-07.03102.03102.2	3.5527	0.3517	1897.43	1898.123	1	843.6	50.0%	1	R.LTADYDALDIANRIGYI.-	2

U	ORFP:YDL136W	6	11	31.7%	120	13910	10.6	RPL35B SGDID:S0002295, Chr IV from 217600-217602,218008-218367
U	ORFP:YDL191W	6	11	31.7%	120	13910	10.6	RPL35A SGDID:S0002350, Chr IV from 117665-117667,118159-118518

Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
PARC_cac1phos_04122005-05.01300.01300.1	2.4013	0.2221	1006.69	1007.178	1	385.8	75.0%	1	M.AGVKAYELR.T	1
PARC_cac1phos_04122005-07.01272.01272.2	2.62	0.1498	1007.31	1007.178	1	798.0	81.2%	1	M.AGVKAYELR.T	2
PARC_cac1phos_04122005-06.01155.01155.2	2.8565	0.3222	1237.29	1236.457	1	655.9	70.0%	1	M.AGVKAYELRTK.S	2
PARC_cac1phos_04122005-05.02183.02183.2	4.1317	0.3753	1630.81	1631.836	1	1411.0	73.1%	6	K.SIACVLTVINEQQR.E	2
PARC_cac1phos_04122005-07.01330.01330.2	3.6204	0.3609	1452.27	1452.648	1	1289.2	75.0%	1	R.ALTKFEASQVTEK.Q	2
PARC_cac1phos_04122005-02.00884.00884.2	3.0531	0.2374	1038.95	1039.13	1	869.6	87.5%	1	K.FEASQVTEK.Q	2

ORFP:YOL039W

31.1%

106

10746

4.0

RPP2A SGDID:S0005399, Chr XV from 254295-254615

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	PARC_cac1phos_04122005-03.02548.02548.2	4.9291	0.4466	1981.79	1981.256	1	2257.5	66.7%	3	K.YLAAYLLLNAAGNTPDATK.I	2
*	PARC_cac1phos_04122005-05.02176.02176.2	4.1026	0.4276	1545.19	1545.727	1	1343.6	76.9%	1	K.AILESVGIEIEDEK.V	2

KERATIN02

30.7%

622

61987

5.2

no description

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	PARC_cac1phos_04122005-02.00856.00856.2	2.8398	0.1492	1233.59	1233.283	18	632.9	50.0%	1	T.SGGGGGGGLGSGGSIR.S	2
*	PARC_cac1phos_04122005-03.01946.01946.2	5.9571	0.6025	2705.81	2706.761	1	1383.3	40.3%	7	R.GGGGSFGYSYGGGSGGGFSASSLGGGFGGGSR.G	2
*	PARC_cac1phos_04122005-03.01906.01906.3	5.7955	0.5074	2706.92	2706.761	1	2011.9	34.7%	4	R.GGGGSFGYSYGGGSGGGFSASSLGGGFGGGSR.G	3
*	PARC_cac1phos_04122005-02.00855.00855.2	2.7854	0.2496	1065.75	1066.174	1	1091.7	87.5%	1	K.STMQELNSR.L	2
*	PARC_cac1phos_04122005-02.01051.01051.2	4.7753	0.4271	1587.37	1587.684	1	2434.1	84.6%	1	K.VQALEEANNDLENK.I	2
*	PARC_cac1phos_04122005-07.03708.03708.2	2.7087	0.2373	2902.87	2904.16	1	383.2	29.2%	1	K.NYSPYYNTIDDLKDQIVDLTVGNNK.T	2
*	PARC_cac1phos_04122005-03.03326.03326.3	4.3875	0.3914	2904.29	2904.16	1	511.6	29.2%	6	K.NYSPYYNTIDDLKDQIVDLTVGNNK.T	3
*	PARC_cac1phos_04122005-05.00482.00482.3	5.1567	0.3663	2896.31	2897.146	1	1364.2	30.8%	1	K.NHKEEMSQLTGQNSGDVNVEINVAPGK.D	3
*	PARC_cac1phos_04122005-02.01468.01468.2	5.6757	0.5211	2518.01	2517.727	1	1270.9	47.8%	4	K.EEMSQLTGQNSGDVNVEINVAPGK.D	2
*	PARC_cac1phos_04122005-03.00466.00466.3	6.5376	0.4086	3266.09	3266.413	1	2718.6	37.5%	12	K.DIENQYETQITQIEHEVSSSGQEVQSSAK.E	3
*	PARC_cac1phos_04122005-04.02702.02702.2	5.3969	0.5194	1838.81	1839.056	1	2409.4	73.3%	25	R.HGVQELEIELQSQLSK.K	2
*	PARC_cac1phos_04122005-02.00790.00790.2	4.1676	0.3104	1792.47	1792.732	1	935.1	47.7%	1	R.GGSGGSYGGGGSGGGYGGGSGSR.G	2

ORFP:YJR123W

29.8%

225

25039

8.6

RPS5 SGDID:S0003884, Chr X from 651596-652273

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	PARC_cac1phos_04122005-05.01804.01804.2	3.5178	0.4103	1265.15	1265.409	1	1479.5	80.0%	1	K.DASLVDYVQVR.Q	2
*	PARC_cac1phos_04122005-05.04598.04598.3	6.209	0.4522	3058.37	3058.462	1	1414.7	30.6%	2	K.HTLDIINVLTDQNPIQVVVDAITNTGPR.E	3
*	PARC_cac1phos_04122005-02.03634.03634.2	3.1194	0.116	2039.35	2039.253	3	378.3	44.4%	2	L.TDQNPIQVVVDAITNTGPR.E	2
*	PARC_cac1phos_04122005-05.02331.02331.2	4.3591	0.4455	1340.43	1340.609	1	1347.6	70.8%	5	R.VNQAIALLTIGAR.E	2
*	PARC_cac1phos_04122005-03.03275.03275.2	4.5549	0.3219	1587.41	1587.811	1	2181.0	75.0%	10	K.TIAETLAEELINAAK.G	2
*	PARC_cac1phos_04122005-02.03372.03372.3	3.9489	0.275	1587.53	1587.811	1	2921.7	60.7%	1	K.TIAETLAEELINAAK.G	3

U	ORFP:YDR418W	3	21	29.7%	165	17823	9.4	RPL12B SGDID:S0002826, Chr IV from 1301604-1302101
U	ORFP:YEL054C	3	21	29.7%	165	17823	9.4	RPL12A SGDID:S0000780, Chr V from 53218-52721, reverse complement

Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
PARC_cac1phos_04122005-02.01035.01035.2	4.0258	0.4048	1299.53	1298.482	1	1876.1	82.1%	8	R.AVGGEVGASAALAPK.I	2
PARC_cac1phos_04122005-05.02627.02627.2	3.1387	0.0663	1708.67	1708.912	1	658.5	57.1%	1	K.HSGNIQLDEIIEIAR.Q	2
PARC_cac1phos_04122005-07.02450.02450.2	4.4687	0.3932	2074.43	2075.24	1	687.2	58.3%	12	K.NPHDIIEGINAGEIEIPEN.-	2

U	ORFP:YBR010W	6	23	28.7%	136	15356	11.4	HHT1 SGDID:S0000214, Chr II from 256288-256698
U	ORFP:YNL031C	6	23	28.7%	136	15356	11.4	HHT2 SGDID:S0004976, Chr XIV from 576046-575636, reverse complement

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
2	PARC_cac1phos_04122005-02.00900.00900.1	2.0952	0.1215	850.48	850.947	7	244.3	75.0%	1	R.EIAQDFK.T	1
	PARC_cac1phos_04122005-02.04495.04495.2	4.8254	0.485	2504.03	2504.753	1	1945.9	61.4%	1	R.FQSSAIGALQESVEAYLVSLFED.T	2
	PARC_cac1phos_04122005-07.04538.04538.3	7.0703	0.4392	3424.22	3424.832	1	1117.8	33.1%	17	R.FQSSAIGALQESVEAYLVSLFEDTNLAAIHAK.R	3
	PARC_cac1phos_04122005-05.04691.04691.3	3.5813	0.3151	3148.49	3149.525	3	539.1	21.6%	1	Q.SSAIGALQESVEAYLVSLFEDTNLAAIHAK.R	3
	PARC_cac1phos_04122005-05.04510.04510.3	6.838	0.5273	2975.66	2975.368	1	1605.9	37.0%	2	S.AIGALQESVEAYLVSLFEDTNLAAIHAK.R	3
	PARC_cac1phos_04122005-07.04544.04544.2	2.7857	0.2515	2549.27	2549.84	2	286.4	25.0%	1	L.QESVEAYLVSLFEDTNLAAIHAK.R	2

KERATIN22

28.5%

645

65865

8.0

no description

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	PARC_cac1phos_04122005-03.01859.01859.2	5.8586	0.6227	1840.01	1840.005	1	1638.9	61.9%	8	K.SISISVAGGGGGFGAAGGFGGR.G	2
*	PARC_cac1phos_04122005-04.02166.02166.2	4.7607	0.3828	2400.05	2400.445	1	2070.6	46.6%	12	G.GSGFGGGSGFGGGSGFSGGGFGGGGFGGGR.F	2
*	PARC_cac1phos_04122005-04.02135.02135.3	4.8814	0.314	2401.43	2400.445	1	6682.7	49.1%	1	G.GSGFGGGSGFGGGSGFSGGGFGGGGFGGGR.F	3
*	PARC_cac1phos_04122005-07.03358.03358.3	4.5001	0.4329	4092.23	4094.578	1	721.1	19.2%	1	R.FGGFGGPGGVGGLGGPGGFGPGGYPGGIHEVSVNQSLLQPLNVK.V	3
	PARC_cac1phos_04122005-02.01106.01106.2	4.5403	0.08	1476.19	1476.673	1	2728.2	90.9%	4	R.FLEQQNQVLQTK.W	2 2
*	PARC_cac1phos_04122005-03.02120.02120.2	3.0417	0.3295	1599.59	1598.842	1	558.8	61.5%	1	M.NVGTRPINLEPIFQ.G	2
*	PARC_cac1phos_04122005-02.01860.01860.2	5.5426	0.4592	2129.69	2129.26	1	2398.2	67.6%	1	R.TSQNSELNNMQDLVEDYK.K	2
*	PARC_cac1phos_04122005-02.02596.02596.2	4.2112	0.3112	1461.73	1461.698	1	1120.0	77.3%	5	K.VDLLNQEIEFLK.V	2
	PARC_cac1phos_04122005-02.02730.02730.1	2.9634	0.1211	1329.77	1330.521	2	472.5	63.6%	2	R.NLDLDSIIAEVK.A	1 1 1 1
	PARC_cac1phos_04122005-02.02766.02766.2	4.9511	0.3558	1330.31	1330.521	1	1515.3	86.4%	7	R.NLDLDSIIAEVK.A	2 2 2 2
	PARC_cac1phos_04122005-02.02702.02702.1	2.032	0.0080	1103.81	1103.258	190	363.8	50.0%	1	L.DLDSIIAEVK.A	1 1 1 1 1
	PARC_cac1phos_04122005-02.00916.00916.2	3.2065	0.3466	1108.13	1108.196	1	1074.4	87.5%	1	K.AQYEEIAQR.S	2 2 2 2
	PARC_cac1phos_04122005-05.02115.02115.2	3.5663	0.3476	1264.35	1264.464	1	1537.7	85.0%	2	K.LALDVEIATYR.K	2 2 2 2 2 2

Similarities: KERATIN13(2:11)
KERATIN21(5:8)
KERATIN16(1:12)
KERATIN15(1:12)
KERATIN18(5:8)
KERATIN17(4:9)
KERATIN14(1:12)

U	ORFP:YBR009C	3	14	28.2%	103	11368	11.4	HHF1 SGDID:S0000213, Chr II from 255641-255330, reverse complement
U	ORFP:YNL030W	3	14	28.2%	103	11368	11.4	HHF2 SGDID:S0004975, Chr XIV from 576723-577034

Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
PARC_cac1phos_04122005-05.01642.01642.2	3.2194	0.2179	1179.59	1179.359	1	1383.7	94.4%	2	R.ISGLIYEEVR.A	2
PARC_cac1phos_04122005-05.02131.02131.2	3.5392	0.2407	1309.37	1309.546	1	990.1	81.8%	6	K.TVTSLDVVYALK.R	2
PARC_cac1phos_04122005-05.01578.01578.1	2.0819	0.3052	714.39	714.796	4	335.7	66.7%	6	R.TLYGFGG.-	1

ORFP:YDL082W

28.1%

199

22554

11.2

RPL13A SGDID:S0002240, Chr IV from 308423-308426,308792-309387

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
	PARC_cac1phos_04122005-05.01303.01303.1	1.8055	0.3068	964.56	965.097	1	298.7	66.7%	1	K.AAGLTAAYAR.T	1 1
	PARC_cac1phos_04122005-06.01154.01154.2	3.3564	0.4323	964.87	965.097	1	993.1	83.3%	5	K.AAGLTAAYAR.T	2 2
2	PARC_cac1phos_04122005-07.01514.01514.1	1.9463	0.1612	744.63	744.955	43	380.9	80.0%	1	K.IIVFPR.N	1 1 1
*	PARC_cac1phos_04122005-05.01371.01371.2	2.8915	0.0548	1385.29	1385.517	4	613.0	50.0%	1	R.NGKAPEAEQVLSAA.A	2
	PARC_cac1phos_04122005-02.02614.02614.3	3.7243	0.3382	2654.99	2654.937	1	716.5	29.0%	1	K.APEAEQVLSAAATFPIAQPATDVEAR.A	3 3
	PARC_cac1phos_04122005-02.02552.02552.2	5.3343	0.5371	2655.51	2654.937	1	1061.1	48.0%	5	K.APEAEQVLSAAATFPIAQPATDVEAR.A	2 2
	PARC_cac1phos_04122005-07.01554.01554.2	3.621	0.3325	1658.69	1658.852	1	1025.5	73.3%	3	A.AATFPIAQPATDVEAR.A	2 2
	PARC_cac1phos_04122005-05.01546.01546.2	3.6362	0.3672	1587.49	1587.773	2	577.3	64.3%	2	A.ATFPIAQPATDVEAR.A	2 2
	PARC_cac1phos_04122005-05.01506.01506.2	2.7957	0.1351	1517.09	1516.694	3	314.2	57.7%	1	A.TFPIAQPATDVEAR.A	2 2
	PARC_cac1phos_04122005-02.00882.00882.2	3.5713	0.3319	1194.67	1194.246	1	1082.3	85.0%	1	R.AVQDNGESAFR.T	2 2

Similarities: ORFP:YMR142C(9:1)
ORFP:YOR153W(1:9)

ORFP:YMR142C

28.1%

199

22525

11.1

RPL13B SGDID:S0004750, Chr XIII from 551206-551203,550800-550205, reverse complement

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
	PARC_cac1phos_04122005-05.01303.01303.1	1.8055	0.3068	964.56	965.097	1	298.7	66.7%	1	K.AAGLTAAYAR.T	1 1
	PARC_cac1phos_04122005-06.01154.01154.2	3.3564	0.4323	964.87	965.097	1	993.1	83.3%	5	K.AAGLTAAYAR.T	2 2
2	PARC_cac1phos_04122005-07.01514.01514.1	1.9463	0.1612	744.63	744.955	43	380.9	80.0%	1	K.IIVFPR.D	1 1 1
*	PARC_cac1phos_04122005-05.01291.01291.2	2.8573	0.0338	1314.49	1315.423	1	918.3	62.5%	1	R.DGKAPEAEQVLSA.A	2
*	PARC_cac1phos_04122005-03.01744.01744.3	4.0232	0.2246	2956.37	2955.251	1	468.2	24.1%	1	R.DGKAPEAEQVLSAAATFPIAQPATDVEAR.A	3
	PARC_cac1phos_04122005-02.02614.02614.3	3.7243	0.3382	2654.99	2654.937	1	716.5	29.0%	1	K.APEAEQVLSAAATFPIAQPATDVEAR.A	3 3
	PARC_cac1phos_04122005-02.02552.02552.2	5.3343	0.5371	2655.51	2654.937	1	1061.1	48.0%	5	K.APEAEQVLSAAATFPIAQPATDVEAR.A	2 2
	PARC_cac1phos_04122005-07.01554.01554.2	3.621	0.3325	1658.69	1658.852	1	1025.5	73.3%	3	A.AATFPIAQPATDVEAR.A	2 2
	PARC_cac1phos_04122005-05.01546.01546.2	3.6362	0.3672	1587.49	1587.773	2	577.3	64.3%	2	A.ATFPIAQPATDVEAR.A	2 2
	PARC_cac1phos_04122005-05.01506.01506.2	2.7957	0.1351	1517.09	1516.694	3	314.2	57.7%	1	A.TFPIAQPATDVEAR.A	2 2
	PARC_cac1phos_04122005-02.00882.00882.2	3.5713	0.3319	1194.67	1194.246	1	1082.3	85.0%	1	R.AVQDNGESAFR.T	2 2

Similarities: ORFP:YDL082W(9:2)
ORFP:YOR153W(1:10)

ORFP:YGR027C

27.8%

108

12039

10.3

RPS25A SGDID:S0003259, Chr VII from 534459-534133, reverse complement

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
	PARC_cac1phos_04122005-02.00658.00658.1	3.0372	0.219	729.41	729.855	1	1078.6	75.0%	1	K.AAAALAGGK.K	1 1
	PARC_cac1phos_04122005-05.01734.01734.2	2.6908	0.2845	1140.07	1137.321	3	622.9	72.2%	2	R.YVSVSVLVDR.L	2 2
*	PARC_cac1phos_04122005-05.01246.01246.2	2.8075	0.3093	1211.57	1211.317	1	516.0	75.0%	1	K.QAIYTRATASE.-	2

Similarities: ORFP:YLR333C(2:1)

ORFP:YCL028W

26.9%

405

42580

6.6

RNQ1 SGDID:S0000533, Chr III from 70150-71367

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	PARC_cac1phos_04122005-05.00475.00475.3	4.263	0.3621	2126.15	2126.29	1	752.4	40.8%	1	K.LISEAESHFSQGNHAEAVAK.L	3
*	PARC_cac1phos_04122005-05.00476.00476.2	4.1738	0.3984	2127.97	2126.29	1	1286.9	52.6%	1	K.LISEAESHFSQGNHAEAVAK.L	2
*	PARC_cac1phos_04122005-03.02022.02022.3	4.4185	0.4467	2506.31	2506.744	1	894.3	31.8%	5	K.LTSAAQSNPNDEQMSTIESLIQK.I	3
*	PARC_cac1phos_04122005-05.02371.02371.2	5.3353	0.4318	2508.81	2506.744	1	886.7	52.3%	11	K.LTSAAQSNPNDEQMSTIESLIQK.I	2
*	PARC_cac1phos_04122005-02.01796.01796.2	4.1845	0.4408	1645.99	1645.843	1	1810.6	62.5%	2	R.AAGGGSSFMNTLMADSK.G	2
*	PARC_cac1phos_04122005-04.02666.02666.2	3.6253	0.4963	1487.23	1486.77	1	1004.8	61.5%	8	K.LALLATVMTHSSNK.G	2
*	PARC_cac1phos_04122005-04.03979.03979.3	6.2761	0.5269	3341.45	3342.781	1	2480.0	33.1%	6	R.GFDVGTVMSMLSGSGGGSQSMGASGLAALASQFFK.S	3
*	PARC_cac1phos_04122005-03.03706.03706.3	4.8488	0.424	3022.58	3023.464	1	1262.5	25.0%	3	D.VGTVMSMLSGSGGGSQSMGASGLAALASQFFK.S	3
*	PARC_cac1phos_04122005-03.03454.03454.3	4.2823	0.3849	2535.8	2535.849	1	805.3	25.0%	1	M.SMLSGSGGGSQSMGASGLAALASQFFK.S	3
*	PARC_cac1phos_04122005-04.03384.03384.2	3.5873	0.4618	2536.83	2535.849	1	816.5	34.6%	2	M.SMLSGSGGGSQSMGASGLAALASQFFK.S	2
*	PARC_cac1phos_04122005-03.03412.03412.2	3.2782	0.3684	2448.39	2448.771	1	732.0	34.0%	1	S.MLSGSGGGSQSMGASGLAALASQFFK.S	2
*	PARC_cac1phos_04122005-03.03347.03347.2	5.1319	0.5869	2317.79	2317.579	1	1375.9	52.1%	1	M.LSGSGGGSQSMGASGLAALASQFFK.S	2
*	PARC_cac1phos_04122005-03.03346.03346.3	4.6572	0.3788	2318.06	2317.579	1	1130.7	30.2%	1	M.LSGSGGGSQSMGASGLAALASQFFK.S	3
*	PARC_cac1phos_04122005-02.03414.03414.2	5.3961	0.5891	2203.91	2204.419	1	1121.8	43.5%	3	L.SGSGGGSQSMGASGLAALASQFFK.S	2
*	PARC_cac1phos_04122005-02.03392.03392.3	4.1485	0.2471	2204.42	2204.419	1	1089.4	29.3%	1	L.SGSGGGSQSMGASGLAALASQFFK.S	3
*	PARC_cac1phos_04122005-03.02808.02808.2	3.9468	0.3716	1153.77	1153.367	1	1401.4	80.0%	1	S.GLAALASQFFK.S	2

U	ORFP:YHL033C	7	17	26.6%	256	28125	10.0	RPL8A SGDID:S0001025, Chr VIII from 36023-35253, reverse complement
U	ORFP:YLL045C	7	17	26.6%	256	28112	10.0	RPL8B SGDID:S0003968, Chr XII from 48628-47858, reverse complement

Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
PARC_cac1phos_04122005-05.01430.01430.2	3.9598	0.3679	1159.31	1159.33	1	1579.9	90.0%	2	K.NFGIGQAVQPK.R	2
PARC_cac1phos_04122005-05.02643.02643.2	3.5607	0.4308	1891.43	1891.221	1	238.3	50.0%	1	R.LKVPPTIAQFQYTLDR.N	2
PARC_cac1phos_04122005-07.01582.01582.1	1.9022	0.2834	971.44	972.126	5	419.3	62.5%	2	K.LVLIANDVD.P	1
PARC_cac1phos_04122005-04.03752.03752.2	3.4327	0.18	2453.85	2452.946	1	692.5	38.1%	1	K.LVLIANDVDPIELVVFLPALCK.K	2
PARC_cac1phos_04122005-03.03274.03274.2	4.9067	0.5059	1499.63	1499.843	1	1828.5	83.3%	8	D.PIELVVFLPALCK.K	2
PARC_cac1phos_04122005-05.01340.01340.2	2.5825	0.3301	1301.95	1302.514	3	640.5	54.2%	1	R.LGTLVNQKTSAVA.A	2
PARC_cac1phos_04122005-02.01302.01302.2	3.1347	0.3275	1118.01	1118.275	1	1341.7	85.0%	2	K.TSAVAALTEVR.A	2

KERATIN03

26.5%

593

59519

5.2

no description

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	PARC_cac1phos_04122005-02.01022.01022.2	4.164	0.4373	1382.29	1382.467	1	1931.4	77.3%	1	R.ALEESNYELEGK.I	2
*	PARC_cac1phos_04122005-04.02914.02914.2	6.3425	0.4704	2368.57	2368.652	1	2427.6	65.0%	4	K.NQILNLTTDNANILLQIDNAR.L	2
*	PARC_cac1phos_04122005-07.03148.03148.3	5.6322	0.3197	2369.03	2368.652	1	1993.1	42.5%	2	K.NQILNLTTDNANILLQIDNAR.L	3
	PARC_cac1phos_04122005-07.01844.01844.2	3.8197	0.2655	1355.73	1355.537	1	1391.1	77.3%	1	D.NANILLQIDNAR.L	2
*	PARC_cac1phos_04122005-02.03294.03294.3	3.8865	0.4317	2872.37	2874.213	1	909.9	28.8%	1	R.NVSTGDVNVEMNAAPGVDLTQLLNNMR.S	3
*	PARC_cac1phos_04122005-02.03292.03292.2	3.2088	0.0736	2301.11	2300.653	1	503.0	47.5%	1	D.VNVEMNAAPGVDLTQLLNNMR.S	2
*	PARC_cac1phos_04122005-02.00951.00951.2	3.6995	0.3691	1367.65	1366.43	1	1335.0	80.0%	1	R.SQYEQLAEQNR.K	2
*	PARC_cac1phos_04122005-05.02402.02402.2	5.596	0.5038	1997.63	1998.151	1	2292.3	78.1%	10	K.ELTTEIDNNIEQISSYK.S	2
*	PARC_cac1phos_04122005-07.02980.02980.2	4.3472	0.3715	1797.83	1798.09	1	1478.1	63.3%	5	R.NVQALEIELQSQLALK.Q	2
*	PARC_cac1phos_04122005-03.03662.03662.3	3.5578	0.2189	4120.04	4120.529	1	451.5	18.6%	1	K.QSLEASLAETEGRYCVQLSQIQAQISALEEQLQQIR.A	3
*	PARC_cac1phos_04122005-03.03662.03662.2	6.3951	0.5698	2747.03	2748.075	1	1923.7	56.8%	2	R.YCVQLSQIQAQISALEEQLQQIR.A	3
*	PARC_cac1phos_04122005-03.03664.03664.3	4.5542	0.3494	2747.75	2748.075	1	949.7	36.4%	1	R.YCVQLSQIQAQISALEEQLQQIR.A	3
*	PARC_cac1phos_04122005-05.01992.01992.2	4.8037	0.4282	2084.33	2084.21	1	1927.2	65.6%	1	R.AETECQNTEYQQLLDIK.I	2

U	ORFP:YGR118W	3	9	26.2%	145	16038	10.7	RPS23A SGDID:S0003350, Chr VII from 726975-727039,727360-727732
U	ORFP:YPR132W	3	9	26.2%	145	16038	10.7	RPS23B SGDID:S0006336, Chr XVI from 794959-795023,795389-795761

Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
PARC_cac1phos_04122005-05.03776.03776.2	4.0746	0.3963	2969.49	2970.231	1	705.1	40.4%	1	K.VTAFVPNDGCLNFVDENDEVLLAGFGR.K	2
PARC_cac1phos_04122005-05.03216.03216.2	5.1233	0.5282	2126.55	2126.296	1	1409.7	55.6%	4	D.GCLNFVDENDEVLLAGFGR.K	2
PARC_cac1phos_04122005-03.02698.02698.2	4.3943	0.3477	1174.63	1173.441	1	1207.7	85.0%	4	K.VSGVSLLALWK.E	2

U	ORFP:YBL002W	3	12	26.0%	131	14237	10.1	HTB2 SGDID:S0000098, Chr II from 236454-236849
U	ORFP:YDR224C	3	12	26.0%	131	14252	10.1	HTB1 SGDID:S0002632, Chr IV from 914703-914308, reverse complement

Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
PARC_cac1phos_04122005-07.03991.03991.2	4.971	0.5007	1773.31	1773.014	1	1801.5	75.0%	8	K.SMSILNSFVNDIFER.I	2
PARC_cac1phos_04122005-05.01190.01190.2	2.6685	0.4256	1256.49	1256.404	1	695.8	63.6%	2	K.HAVSEGTRAVTK.Y	2
PARC_cac1phos_04122005-06.01162.01162.2	4.1144	0.4635	1980.43	1981.13	1	1090.5	52.8%	2	K.HAVSEGTRAVTKYSSSTQA.-	2

ORFP:YGL076C

25.4%

244

27638

10.1

RPL7A SGDID:S0003044, Chr VII from 365997-365987,365527-365434,364965-364336, reverse complement

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	PARC_cac1phos_04122005-02.00594.00594.2	2.8025	0.0869	975.29	975.046	1	1593.9	87.5%	1	K.TAEQVAAER.A	2
	PARC_cac1phos_04122005-02.02127.02127.2	4.0707	0.4107	1992.39	1993.266	1	1042.4	56.2%	10	K.LIEPYVAYGYPSYSTIR.Q	2 2
	PARC_cac1phos_04122005-02.01567.01567.2	4.3504	0.2799	1555.15	1554.784	1	1536.5	71.4%	6	R.VPLSDNAIIEANLGK.Y	2 2
	PARC_cac1phos_04122005-07.04254.04254.2	4.469	0.4885	2381.19	2381.777	1	982.0	47.5%	2	K.YGILSIDDLIHEIITVGPHFK.Q	2 2
	PARC_cac1phos_04122005-07.04258.04258.3	4.4061	0.4594	2381.66	2381.777	1	639.6	33.8%	2	K.YGILSIDDLIHEIITVGPHFK.Q	3 3
	PARC_cac1phos_04122005-05.04071.04071.2	4.3941	0.5114	1934.77	1935.23	1	1022.8	50.0%	3	L.SIDDLIHEIITVGPHFK.Q	2 2

Similarities: ORFP:YPL198W(5:1)

U	ORFP:YGL135W	4	10	25.3%	217	24486	9.7	RPL1B SGDID:S0003103, Chr VII from 254644-255297
U	ORFP:YPL220W	4	10	25.3%	217	24486	9.7	RPL1A SGDID:S0006141, Chr XVI from 135789-136442

Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
PARC_cac1phos_04122005-04.02960.02960.2	5.1029	0.3415	1491.49	1490.74	1	2600.0	87.5%	4	R.NFLETVELQVGLK.N	2
PARC_cac1phos_04122005-05.02396.02396.2	3.7529	0.3521	1368.45	1368.616	1	1314.1	81.8%	4	K.YNAFIASEVLIK.Q	2
PARC_cac1phos_04122005-05.01308.01308.2	2.8024	0.2364	1270.63	1270.387	1	917.5	68.2%	1	K.AGKFPTPVSHND.D	2
PARC_cac1phos_04122005-07.04784.04784.2	4.3722	0.4188	2065.79	2065.565	1	1484.5	61.8%	1	D.VLVNQILMSVNFFVSLLK.K	2

ORFP:YJL052W

25.0%

332

35750

8.3

TDH1 SGDID:S0003588, Chr X from 337967-338965

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	PARC_cac1phos_04122005-07.01726.01726.2	2.5844	0.1123	1117.21	1117.34	4	451.1	61.1%	1	M.IRIAINGFGR.I	2
	PARC_cac1phos_04122005-02.01207.01207.2	3.7709	0.434	1821.35	1821.013	1	899.0	56.2%	2	K.IVSNASCTTNCLAPLAK.V	2 2 2
	PARC_cac1phos_04122005-04.02535.02535.2	4.573	0.4837	1847.59	1847.093	1	2132.4	68.8%	4	K.VINDAFGIEEGLMTTVH.S	2 2 2
	PARC_cac1phos_04122005-07.03574.03574.2	4.1076	0.4201	2594.01	2594.958	1	485.1	32.6%	1	K.VINDAFGIEEGLMTTVHSMTATQK.T	2 2
	PARC_cac1phos_04122005-05.01307.01307.2	4.2977	0.511	1645.75	1645.813	1	628.2	58.8%	1	R.GGRTASGNIIPSSTGAAK.A	2 2 2
	PARC_cac1phos_04122005-07.01287.01287.2	3.0109	0.3614	1375.01	1375.522	2	479.6	60.7%	3	R.TASGNIIPSSTGAAK.A	2 2 2
	PARC_cac1phos_04122005-05.02214.02214.1	2.2532	0.3682	1470.59	1471.734	1	706.3	57.7%	3	R.VPTVDVSVVDLTVK.L	1 1 1
	PARC_cac1phos_04122005-04.01726.01726.2	4.4309	0.4728	1471.37	1471.734	1	1336.2	73.1%	63	R.VPTVDVSVVDLTVK.L	2 2 2

Similarities: ORFP:YGR192C(6:2)
ORFP:YJR009C(7:1)

U	ORFP:YBR191W	4	7	25.0%	160	18242	10.4	RPL21A SGDID:S0000395, Chr II from 606225-606235,606624-607095
U	ORFP:YPL079W	4	7	25.0%	160	18274	10.4	RPL21B SGDID:S0006000, Chr XVI from 406631-406641,407063-407534

Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
PARC_cac1phos_04122005-05.01288.01288.1	1.8527	0.1264	980.42	981.137	9	351.3	62.5%	1	K.TGVVYNVTK.S	1
PARC_cac1phos_04122005-07.01267.01267.2	3.1289	0.3872	981.05	981.137	1	714.4	87.5%	3	K.TGVVYNVTK.S	2
PARC_cac1phos_04122005-05.01322.01322.1	2.3918	0.1344	916.55	917.093	34	647.2	68.8%	2	K.SSVGVIINK.M	1
PARC_cac1phos_04122005-05.01852.01852.2	4.5675	0.5365	2389.11	2388.637	1	1078.1	52.4%	1	R.ESRIVSTEGNVPQTLAPVPYET.F	2

ORFP:YLR340W

22.8%

312

33717

4.8

RPP0 SGDID:S0004332, Chr XII from 805887-806825

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	PARC_cac1phos_04122005-02.02256.02256.1	2.0801	0.0567	1267.45	1268.409	10	561.7	60.0%	1	R.GFLSDLPDFEK.L	1
*	PARC_cac1phos_04122005-02.02290.02290.2	3.1327	0.2642	1268.65	1268.409	4	924.4	75.0%	3	R.GFLSDLPDFEK.L	2
*	PARC_cac1phos_04122005-02.03635.03635.2	2.7006	0.185	1537.41	1534.792	20	233.7	54.2%	2	F.LSDLPDFEKLLPF.V	2
*	PARC_cac1phos_04122005-03.02230.02230.2	3.9351	0.3997	1765.75	1766.004	1	719.4	56.7%	8	K.GNVGFVFTNEPLTEIK.N	2
*	PARC_cac1phos_04122005-02.02044.02044.2	3.106	0.2987	1296.11	1296.509	1	948.4	72.7%	1	K.TSFFQALGVPTK.I	2
*	PARC_cac1phos_04122005-05.04039.04039.3	3.8273	0.2385	3233.24	3233.645	1	667.6	26.9%	1	D.LLAVAIAASYHYPEIEDLVDRIENPEKY.A	3

ORFP:YML063W

22.0%

255

28812

10.0

RPS1B SGDID:S0004528, Chr XIII from 146482-147249

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
	PARC_cac1phos_04122005-05.00460.00460.2	2.856	0.3645	1530.23	1530.808	1	982.1	66.7%	1	R.KWQTLIEANVTVK.T	2 2
	PARC_cac1phos_04122005-04.01988.01988.2	3.2719	0.3015	1403.13	1402.634	1	978.6	72.7%	12	K.WQTLIEANVTVK.T	2 2
*	PARC_cac1phos_04122005-05.01440.01440.2	2.8671	0.3787	1420.19	1419.575	1	765.8	58.3%	1	R.EVQNSTLAQLTSK.L	2
	PARC_cac1phos_04122005-03.02591.02591.2	4.3622	0.438	1847.63	1848.037	1	1158.9	61.8%	7	K.FDVGALMALHGEGSGEEK.G	2 2
*	PARC_cac1phos_04122005-07.01811.01811.2	2.6103	0.083	1323.15	1323.486	11	557.9	63.6%	1	K.VSGFKDEVLETV.-	2

Similarities: ORFP:YLR441C(3:2)

U	ORFP:YMR194W	2	2	22.0%	100	11124	11.6	RPL36A SGDID:S0004807, Chr XIII from 651144-651159,651623-651909
U	ORFP:YPL249C-A	2	2	22.0%	100	11135	11.6	RPL36B SGDID:S0006438, Chr XVI from 76239-76224,75985-75699, reverse complement

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
	PARC_cac1phos_04122005-07.01415.01415.2	2.5899	0.2923	1134.47	1135.262	3	432.8	66.7%	1	R.EIAGLSPYER.R	2
	PARC_cac1phos_04122005-07.01458.01458.2	2.9161	0.3269	1303.27	1303.516	1	877.5	68.2%	1	K.AKVEEMNNIIAA.S	2

ORFP:YPL198W

21.7%

244

27696

10.1

RPL7B SGDID:S0006119, Chr XVI from 173151-173161,173571-173664,174072-174701

Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
PARC_cac1phos_04122005-02.02127.02127.2	4.0707	0.4107	1992.39	1993.266	1	1042.4	56.2%	10	K.LIEPYVAYGYPSYSTIR.Q	2 2
PARC_cac1phos_04122005-02.01567.01567.2	4.3504	0.2799	1555.15	1554.784	1	1536.5	71.4%	6	R.VPLSDNAIIEANLGK.Y	2 2
PARC_cac1phos_04122005-07.04254.04254.2	4.469	0.4885	2381.19	2381.777	1	982.0	47.5%	2	K.YGILSIDDLIHEIITVGPHFK.Q	2 2
PARC_cac1phos_04122005-07.04258.04258.3	4.4061	0.4594	2381.66	2381.777	1	639.6	33.8%	2	K.YGILSIDDLIHEIITVGPHFK.Q	3 3
PARC_cac1phos_04122005-05.04071.04071.2	4.3941	0.5114	1934.77	1935.23	1	1022.8	50.0%	3	L.SIDDLIHEIITVGPHFK.Q	2 2

Similarities: ORFP:YGL076C(5:0)

ORFP:YGL123W

21.7%

254

27450

10.4

RPS2 SGDID:S0003091, Chr VII from 277621-278385

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	PARC_cac1phos_04122005-05.03635.03635.2	4.5225	0.3937	1740.77	1741.081	1	1321.1	60.7%	4	K.ITTIEEIFLHSLPVK.E	2
*	PARC_cac1phos_04122005-05.02087.02087.2	4.9702	0.554	1835.11	1836.052	1	1897.9	71.9%	2	K.LLQLAGVEDVYTQSNGK.T	2
*	PARC_cac1phos_04122005-02.02956.02956.2	4.3307	0.4976	2557.59	2558.847	1	663.5	43.2%	3	N.LWAEQPLPVSPLDIYSDEASAQK.K	2

ORFP:YKL042W

20.7%

363

42271

7.9

SPC42 SGDID:S0001525, Chr XI from 358116-359207

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	PARC_cac1phos_04122005-02.01999.01999.2	2.9906	0.2346	2531.09	2528.755	1	281.7	39.5%	1	R.LYDDYYNIPYQYSNPTPMNR.D	2
*	PARC_cac1phos_04122005-03.02779.02779.2	2.6231	0.0912	1878.83	1878.24	2	472.2	43.8%	1	R.MSPLPSPLNTILPINNR.L	2
*	PARC_cac1phos_04122005-05.02023.02023.2	2.9108	0.3754	1958.01	1958.162	1	356.7	50.0%	1	K.VNPSDDDIMMYESAELK.R	2
*	PARC_cac1phos_04122005-02.03234.03234.2	2.852	0.177	2407.73	2407.673	8	236.8	32.5%	1	K.LSLNNQLQELQSMMDGDDNIK.L	2

U	ORFP:YMR242C	3	3	20.2%	178	21236	10.3	RPL20A SGDID:S0004855, Chr XIII from 754196-754178,753741-753224, reverse complement
U	ORFP:YOR312C	3	3	20.7%	174	20713	10.3	RPL20B SGDID:S0005839, Chr XV from 901174-901168,900760-900243, reverse complement

Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
PARC_cac1phos_04122005-07.01362.01362.2	2.7377	0.146	1092.07	1092.28	2	753.6	83.3%	1	R.IFASNEVIAK.S	2
PARC_cac1phos_04122005-07.02187.02187.2	3.9712	0.4117	1540.61	1538.759	1	1000.6	65.4%	1	R.VAAVETLYQDMAAR.H	2
PARC_cac1phos_04122005-07.01199.01199.2	2.947	0.3489	1359.67	1359.566	1	1377.8	72.7%	1	K.VAEIEKTADVKR.Q	2

U	ORFP:YJL177W	5	8	19.6%	184	20551	10.9	RPL17B SGDID:S0003713, Chr X from 90783-91091,91409-91654
U	ORFP:YKL180W	5	8	19.6%	184	20549	10.9	RPL17A SGDID:S0001663, Chr XI from 109270-109578,109885-110130

Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
PARC_cac1phos_04122005-06.01111.01111.2	4.0986	0.3845	1709.11	1709.859	1	742.4	56.2%	1	M.ARYGATSTNPAKSASAR.G	2
PARC_cac1phos_04122005-06.01110.01110.3	4.3887	0.2564	1711.22	1709.859	2	1071.8	40.6%	1	M.ARYGATSTNPAKSASAR.G	3
PARC_cac1phos_04122005-05.01200.01200.2	2.7704	0.3319	1481.99	1482.593	2	513.8	53.6%	1	R.YGATSTNPAKSASAR.G	2
PARC_cac1phos_04122005-07.01740.01740.2	5.3847	0.4687	1645.11	1645.856	1	2569.9	83.3%	4	K.FVQGLLQNAAANAEAK.G	2
PARC_cac1phos_04122005-05.02307.02307.2	2.9805	0.289	1930.29	1931.156	1	665.6	44.4%	1	K.FVQGLLQNAAANAEAKGLD.A	2

U	ORFP:YJR094W-A	2	67	19.6%	92	10091	10.4	RPL43B SGDID:S0003855, Chr X from 608002-608003,608279-608555
U	ORFP:YPR043W	2	67	19.6%	92	10091	10.4	RPL43A SGDID:S0006247, Chr XVI from 654161-654162,654566-654842

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
	PARC_cac1phos_04122005-05.01286.01286.2	2.5555	0.3519	1098.05	1098.198	1	595.0	68.2%	1	K.TVAGGAYTVSTA.A	2
	PARC_cac1phos_04122005-02.01214.01214.2	5.3363	0.5503	1667.45	1667.86	1	1624.5	64.7%	66	K.TVAGGAYTVSTAAAATVR.S	2

ORFP:YLR033W

19.5%

502

57795

8.2

RSC58 SGDID:S0004023, Chr XII from 208762-210270

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	PARC_cac1phos_04122005-02.01308.01308.2	3.1056	0.3684	2288.25	2289.34	1	714.5	42.1%	1	K.LLSGNEMDEYDDDDATELDK.I	2
*	PARC_cac1phos_04122005-02.01823.01823.2	2.5881	0.1606	1916.43	1915.215	1	310.0	43.3%	1	K.ISMNYTVPISQTYQIR.T	2
*	PARC_cac1phos_04122005-02.01724.01724.2	2.7345	0.2473	2580.07	2580.686	1	292.6	34.1%	1	K.YGNYNSWAPSFNENGTVVDSTTR.G	2
*	PARC_cac1phos_04122005-02.02964.02964.2	3.9025	0.4894	2703.27	2702.896	1	349.5	40.5%	3	K.LQNLYNWTPSNYIGDDEIENFR.N	2
*	PARC_cac1phos_04122005-03.02107.02107.2	3.8546	0.503	1875.93	1876.166	1	972.0	59.4%	3	R.AFPVLQTNYNGSIPVVR.A	2

ORFP:YDL192W

19.3%

181

20529

7.4

ARF1 SGDID:S0002351, Chr IV from 116322-116867

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
	PARC_cac1phos_04122005-03.02892.02892.2	3.5211	0.3444	2323.49	2323.692	1	232.8	37.5%	1	K.LGEVITTIPTIGFNVETVQYK.N	2
*	PARC_cac1phos_04122005-05.01736.01736.2	4.1459	0.3563	1564.51	1565.68	1	1797.4	76.9%	1	R.NTEGVIFVVDSNDR.S	2

ORFP:YLL024C

19.1%

639

69470

5.1

SSA2 SGDID:S0003947, Chr XII from 97484-95565, reverse complement

Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
PARC_cac1phos_04122005-02.00726.00726.1	1.8629	0.0591	687.41	687.814	23	401.9	66.7%	1	R.LIGDAAK.N	1 1 1 1 1 1 1 1 1
PARC_cac1phos_04122005-02.01595.01595.2	2.7104	0.2867	1896.41	1896.067	4	257.2	40.6%	1	K.VNDAVVTVPAYFNDSQR.Q	2 2 2
PARC_cac1phos_04122005-07.01363.01363.1	1.9478	0.1803	1012.49	1013.179	15	383.0	55.6%	1	R.IINEPTAAAI.A	1 1 1 1 1 1 1 1
PARC_cac1phos_04122005-03.01456.01456.2	2.6608	0.0635	1462.55	1460.627	1	824.0	57.7%	1	K.SQVDEIVLVGGSTR.I	2 2
PARC_cac1phos_04122005-02.03127.03127.2	5.9136	0.6275	2577.07	2578.792	1	1737.8	50.0%	4	R.SINPDEAVAYGAAVQAAILTGDESSK.T	2 2
PARC_cac1phos_04122005-02.03674.03674.2	5.1178	0.4829	2556.63	2557.018	1	733.1	45.8%	3	K.TQDLLLLDVAPLSLGIETAGGVMTK.L	2 2
PARC_cac1phos_04122005-05.02340.02340.2	3.5059	0.443	1644.33	1644.967	1	966.1	59.4%	1	D.VAPLSLGIETAGGVMTK.L	2 2
PARC_cac1phos_04122005-05.03455.03455.2	3.6329	0.4311	2585.67	2586.817	1	437.7	36.4%	1	K.SEVFSTYADNQPGVLIQVFEGER.A	2 2

Similarities: ORFP:YDL229W(2:6)
ORFP:YNL209W(2:6)
ORFP:YAL005C(7:1)
ORFP:YBL075C(3:5)
ORFP:YER103W(3:5)
GR78_MOUSE(2:6)
GR78_YEAST(1:7)
GR78_HUMAN(2:6)

U	ORFP:YDL083C	2	15	18.9%	143	15847	10.3	RPS16B SGDID:S0002241, Chr IV from 307788-307765,307332-306925, reverse complement
U	ORFP:YMR143W	2	15	18.9%	143	15847	10.3	RPS16A SGDID:S0004751, Chr XIII from 551927-551950,552495-552902

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
	PARC_cac1phos_04122005-02.02204.02204.2	3.7875	0.4663	1639.19	1637.917	1	1011.9	64.3%	8	K.VNGSPITLVEPEILR.F	2
	PARC_cac1phos_04122005-02.02646.02646.2	3.9292	0.3683	1360.41	1359.649	1	1208.0	86.4%	7	K.VYEPLLLVGLDK.F	2

ORFP:YLR075W

18.6%

221

25361

10.0

RPL10 SGDID:S0004065, Chr XII from 282928-283593

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	PARC_cac1phos_04122005-05.04179.04179.3	5.0568	0.4268	3358.61	3357.708	1	1257.1	26.7%	2	K.KATVDEFPLCVHLVSNELEQLSSEALEAAR.I	3
*	PARC_cac1phos_04122005-05.04367.04367.3	5.0463	0.4256	3230.03	3229.534	1	1361.4	29.5%	14	K.ATVDEFPLCVHLVSNELEQLSSEALEAAR.I	3
*	PARC_cac1phos_04122005-02.02988.02988.2	4.7397	0.364	1961.53	1960.148	1	1392.5	61.8%	1	H.LVSNELEQLSSEALEAAR.I	2
*	PARC_cac1phos_04122005-03.02676.02676.2	4.2342	0.4835	1247.25	1247.48	1	1668.7	85.0%	8	R.VDIGQIIFSVR.T	2
*	PARC_cac1phos_04122005-05.01892.01892.2	3.089	0.2485	1033.13	1033.259	1	913.7	81.2%	1	D.IGQIIFSVR.T	2

ORFP:YLR333C

17.6%

108

12009

10.3

RPS25B SGDID:S0004325, Chr XII from 795899-795573, reverse complement

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
	PARC_cac1phos_04122005-02.00658.00658.1	3.0372	0.219	729.41	729.855	1	1078.6	75.0%	1	K.AAAALAGGK.K	1 1
	PARC_cac1phos_04122005-05.01734.01734.2	2.6908	0.2845	1140.07	1137.321	3	622.9	72.2%	2	R.YVSVSVLVDR.L	2 2

Similarities: ORFP:YGR027C(2:0)

ORFP:YLR441C

17.3%

255

28743

10.0

RPS1A SGDID:S0004433, Chr XII from 1018903-1018136, reverse complement

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
	PARC_cac1phos_04122005-05.00460.00460.2	2.856	0.3645	1530.23	1530.808	1	982.1	66.7%	1	R.KWQTLIEANVTVK.T	2 2
	PARC_cac1phos_04122005-04.01988.01988.2	3.2719	0.3015	1403.13	1402.634	1	978.6	72.7%	12	K.WQTLIEANVTVK.T	2 2
*	PARC_cac1phos_04122005-05.01428.01428.2	3.7318	0.3496	1363.17	1362.523	1	1240.3	75.0%	1	K.EVQGSTLAQLTSK.L	2
	PARC_cac1phos_04122005-03.02591.02591.2	4.3622	0.438	1847.63	1848.037	1	1158.9	61.8%	7	K.FDVGALMALHGEGSGEEK.G	2 2

Similarities: ORFP:YML063W(3:1)

ORFP:YNL069C

17.2%

198

22249

10.5

RPL16B SGDID:S0005013, Chr XIV from 494998-494971,494521-493953, reverse complement

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	PARC_cac1phos_04122005-05.02308.02308.2	3.3055	0.2244	1356.43	1354.505	1	1017.7	77.3%	1	R.AEALNISGEFFR.N	2
*	PARC_cac1phos_04122005-02.00751.00751.2	3.6349	0.4162	1380.27	1380.452	1	1433.4	71.4%	1	K.VSSASAAASESDVAK.Q	2
*	PARC_cac1phos_04122005-05.01504.01504.1	1.8149	0.1446	785.34	785.875	1	336.7	83.3%	1	K.QLASFGY.-	1

ORFP:YNL208W

16.7%

204

21964

9.8

YNL208W SGDID:S0005152, Chr XIV from 254417-255031

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	PARC_cac1phos_04122005-05.02276.02276.2	3.1196	0.4389	1643.31	1643.837	1	810.6	52.9%	1	R.GLFSTIVGGSAGAYAGSK.V	2
*	PARC_cac1phos_04122005-03.02943.02943.2	4.8927	0.3047	1489.39	1488.77	1	2425.0	80.0%	1	K.LSGVLGAIGGAFLANK.I	2

U	ORFP:YHR203C	2	18	16.1%	261	29410	10.1	RPS4B SGDID:S0001246, Chr VIII from 505526-505513,505243-504472, reverse complement
U	ORFP:YJR145C	2	18	16.1%	261	29410	10.1	RPS4A SGDID:S0003906, Chr X from 702763-702750,702493-701722, reverse complement

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
	PARC_cac1phos_04122005-02.03182.03182.2	4.4552	0.4406	2593.47	2593.824	1	959.4	45.5%	4	R.TDTTYPAGFMDVITLDATNENFR.L	2
	PARC_cac1phos_04122005-04.02890.02890.2	5.1606	0.3981	2116.73	2117.496	1	1279.0	61.1%	14	R.LNNVFVIGEQGKPYISLPK.G	2

ORFP:YNL178W

15.8%

240

26503

9.4

RPS3 SGDID:S0005122, Chr XIV from 302677-303399

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	PARC_cac1phos_04122005-02.02224.02224.2	2.7665	0.0619	2233.85	2233.564	102	198.1	30.0%	1	K.ALPDAVTIIEPKEEEPILAPS.V	2
*	PARC_cac1phos_04122005-02.01023.01023.2	3.2584	0.3275	1906.33	1905.97	1	569.3	59.4%	1	K.DYRPAEETEAQAEPVEA.-	2

ORFP:YNL096C

15.8%

190

21634

9.9

RPS7B SGDID:S0005040, Chr XIV from 444312-444169,443823-443395, reverse complement

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	PARC_cac1phos_04122005-05.03112.03112.2	3.4485	0.3319	1725.63	1726.115	2	492.3	60.0%	2	K.ALVLFVPVPALSAYHK.V	2
*	PARC_cac1phos_04122005-02.02159.02159.2	2.8405	0.1354	1579.15	1577.876	1	408.3	50.0%	1	K.VLEDMVFPTEIVGK.R	2

U	ORFP:YGR085C	2	6	15.5%	174	19750	9.9	RPL11B SGDID:S0003317, Chr VII from 648908-648384, reverse complement
U	ORFP:YPR102C	2	6	15.5%	174	19720	9.9	RPL11A SGDID:S0006306, Chr XVI from 731744-731220, reverse complement

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
	PARC_cac1phos_04122005-03.01542.01542.2	3.3752	0.2241	1360.15	1359.522	1	820.9	62.5%	2	K.LVLNISVGESGDR.L	2
	PARC_cac1phos_04122005-05.01410.01410.2	4.1855	0.4509	1514.51	1514.719	1	1658.4	76.9%	4	K.VLEQLSGQTPVQSK.A	2

ORFP:YAL005C

15.4%

642

69768

5.1

SSA1 SGDID:S0000004, Chr I from 141433-139505, reverse complement

Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
PARC_cac1phos_04122005-02.00726.00726.1	1.8629	0.0591	687.41	687.814	23	401.9	66.7%	1	R.LIGDAAK.N	1 1 1 1 1 1 1 1 1
PARC_cac1phos_04122005-02.01595.01595.2	2.7104	0.2867	1896.41	1896.067	4	257.2	40.6%	1	K.VNDAVVTVPAYFNDSQR.Q	2 2 2
PARC_cac1phos_04122005-07.01363.01363.1	1.9478	0.1803	1012.49	1013.179	15	383.0	55.6%	1	R.IINEPTAAAI.A	1 1 1 1 1 1 1 1
PARC_cac1phos_04122005-03.01456.01456.2	2.6608	0.0635	1462.55	1460.627	1	824.0	57.7%	1	K.SQVDEIVLVGGSTR.I	2 2
PARC_cac1phos_04122005-02.03127.03127.2	5.9136	0.6275	2577.07	2578.792	1	1737.8	50.0%	4	R.SINPDEAVAYGAAVQAAILTGDESSK.T	2 2
PARC_cac1phos_04122005-02.03674.03674.2	5.1178	0.4829	2556.63	2557.018	1	733.1	45.8%	3	K.TQDLLLLDVAPLSLGIETAGGVMTK.L	2 2
PARC_cac1phos_04122005-05.02340.02340.2	3.5059	0.443	1644.33	1644.967	1	966.1	59.4%	1	D.VAPLSLGIETAGGVMTK.L	2 2

Similarities: ORFP:YDL229W(2:5)
ORFP:YNL209W(2:5)
ORFP:YLL024C(7:0)
ORFP:YBL075C(3:4)
ORFP:YER103W(2:5)
GR78_MOUSE(2:5)
GR78_YEAST(1:6)
GR78_HUMAN(2:5)

ORFP:YOR063W

15.2%

387

43758

10.3

RPL3 SGDID:S0005589, Chr XV from 444687-445850

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	PARC_cac1phos_04122005-05.01650.01650.2	2.7084	0.2588	1191.89	1192.373	1	933.8	70.0%	2	K.AGMTTIVRDLD.R	2
*	PARC_cac1phos_04122005-07.02455.02455.2	6.5811	0.5981	1768.97	1769.094	1	3244.4	81.2%	18	D.TPPVVVVGVVGYVETPR.G	2
*	PARC_cac1phos_04122005-02.00792.00792.2	3.1942	0.3206	1079.91	1080.142	1	1713.0	88.9%	1	K.YAQDGAGIER.E	2
*	PARC_cac1phos_04122005-05.02958.02958.2	5.2052	0.5138	2280.31	2281.583	1	1263.0	52.5%	7	K.TVAVDSVFEQNEMIDAIAVTK.G	2
*	PARC_cac1phos_04122005-05.02362.02362.2	4.0868	0.4908	1795.43	1796.045	1	1642.0	66.7%	2	D.SVFEQNEMIDAIAVTK.G	2

ORFP:YLR178C

15.1%

219

24357

6.5

TFS1 SGDID:S0004168, Chr XII from 513823-513164, reverse complement

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	PARC_cac1phos_04122005-05.02120.02120.2	3.0048	0.1019	2106.53	2105.447	7	530.4	41.2%	1	S.GPHRYVFLLYKQPKGVDS.S	2
*	PARC_cac1phos_04122005-03.02030.02030.2	2.5537	0.0361	2083.61	2085.327	31	419.9	35.3%	1	G.VDSSKFSKIKDRPNWGYG.T	2

ORFP:YOR204W

14.9%

604

65553

7.8

DED1 SGDID:S0005730, Chr XV from 722911-724725

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	PARC_cac1phos_04122005-02.03494.03494.2	3.6533	0.4287	2539.73	2538.898	1	240.7	34.1%	1	K.DVPEPITEFTSPPLDGLLLENIK.L	2
*	PARC_cac1phos_04122005-02.03204.03204.2	3.019	0.2993	1530.23	1529.776	1	770.1	69.2%	3	K.TGGFLFPVLSESFK.T	2
*	PARC_cac1phos_04122005-05.02040.02040.2	4.7965	0.4244	1372.83	1372.608	1	1675.5	71.4%	2	R.SGAATLLVATAVAAR.G	2
*	PARC_cac1phos_04122005-05.02311.02311.2	4.6374	0.5188	2055.93	2056.24	1	804.3	44.7%	7	R.AGNTGLATAFFNSENSNIVK.G	2
*	PARC_cac1phos_04122005-04.02896.02896.2	3.894	0.449	2025.87	2026.297	1	981.7	52.9%	2	K.GLHEILTEANQEVPSFLK.D	2

ORFP:YCL008C

14.5%

296

33304

5.5

STP22 SGDID:S0000514, Chr III from 106849-105959, reverse complement

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	PARC_cac1phos_04122005-05.03180.03180.2	2.5102	0.2075	2239.99	2241.514	7	271.8	30.6%	1	G.RTTFHDSLALLDNFHSLRP.R	2
*	PARC_cac1phos_04122005-04.02514.02514.3	3.6281	0.0751	2852.24	2852.363	2	546.3	28.3%	1	I.LHCWDPAAMNLIMVVQELMSLLHE.P	3

U	ORFP:YNL301C	2	11	14.5%	186	20563	11.7	RPL18B SGDID:S0005245, Chr XIV from 64561-64450,64017-63569, reverse complement
U	ORFP:YOL120C	2	11	14.5%	186	20563	11.7	RPL18A SGDID:S0005480, Chr XV from 94401-94290,93842-93394, reverse complement

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
	PARC_cac1phos_04122005-02.01098.01098.2	4.8307	0.4777	1332.29	1332.497	1	1942.8	83.3%	10	K.TVVVVGTVTDDAR.I	2
	PARC_cac1phos_04122005-07.01792.01792.2	3.105	0.263	1502.83	1503.662	2	1053.9	61.5%	1	K.AGGECITLDQLAVR.A	2

U	ORFP:YBL072C	2	2	14.0%	200	22490	10.7	RPS8A SGDID:S0000168, Chr II from 89120-88518, reverse complement
U	ORFP:YER102W	2	2	14.0%	200	22490	10.7	RPS8B SGDID:S0000904, Chr V from 363096-363698

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
	PARC_cac1phos_04122005-06.01186.01186.2	2.8324	0.3625	1667.89	1668.893	1	771.8	60.7%	1	R.IAGVVYHPSNNELVR.T	2
	PARC_cac1phos_04122005-02.01076.01076.2	3.1902	0.4178	1397.17	1397.484	1	760.5	66.7%	1	K.IESSVESQFSAGR.L	2

U	ORFP:YBR181C	2	6	13.6%	236	26996	10.4	RPS6B SGDID:S0000385, Chr II from 592729-592724,592371-591667, reverse complement
U	ORFP:YPL090C	2	6	13.6%	236	26996	10.4	RPS6A SGDID:S0006011, Chr XVI from 378390-378385,377990-377286, reverse complement

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
	PARC_cac1phos_04122005-02.01166.01166.2	4.3469	0.4584	1593.77	1593.687	1	1465.9	71.4%	3	R.IGQEVDGEAVGDEFK.G	2
	PARC_cac1phos_04122005-05.04170.04170.2	5.7043	0.4817	1649.67	1649.07	1	2088.1	78.1%	3	R.GAIVGPDLAVLALVIVK.K	2

ORFP:YIL133C

13.6%

199

22201

10.5

RPL16A SGDID:S0001395, Chr IX from 99416-99386,99095-98527, reverse complement

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	PARC_cac1phos_04122005-05.02284.02284.2	3.9368	0.2842	1412.55	1412.542	1	1219.7	81.8%	2	R.AEELNISGEFFR.N	2
*	PARC_cac1phos_04122005-02.00824.00824.2	2.7902	0.3724	1405.95	1405.505	1	938.3	60.7%	1	K.VASANATAAESDVAK.Q	2

ORFP:YMR241W

13.4%

314

34185

9.9

YHM2 SGDID:S0004854, Chr XIII from 751960-752904

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	PARC_cac1phos_04122005-03.03783.03783.2	4.3936	0.4593	2324.23	2324.684	1	759.0	57.5%	2	R.GGILGYYQGLIPWAWIEASTK.G	2
*	PARC_cac1phos_04122005-03.02558.02558.2	6.0134	0.5053	2109.91	2110.421	1	2661.0	67.5%	2	K.IGASALGGGLSAWNQPIEVIR.V	2

NRL_1MCOH

13.3%

428

46852

8.9

owl|| Immunoglobulin g1 (igg1) (mcg) with a hinge deletion, chain H...

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	PARC_cac1phos_04122005-02.01955.01955.2	2.6289	0.1153	1912.87	1913.181	19	300.9	36.1%	1	V.PLVVNPWGQGTLVTVSSAS.T	2
*	PARC_cac1phos_04122005-05.03154.03154.2	4.0425	0.3183	1808.65	1809.119	1	1310.2	63.3%	18	R.VVSVLTVLHQNWLDGK.E	2
*	PARC_cac1phos_04122005-02.02227.02227.2	3.3399	0.1062	2546.01	2545.681	1	708.7	40.5%	1	K.GFYPSDIAVEWESNGQPENNYK.T	2

ORFP:YOL086C

13.2%

348

36849

6.7

ADH1 SGDID:S0005446, Chr XV from 160593-159547, reverse complement

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	PARC_cac1phos_04122005-05.03243.03243.2	3.1804	0.3957	2701.75	2702.103	1	379.1	29.6%	1	K.SANLMAGHWVAISGAAGGLGSLAVQYAK.A	2
*	PARC_cac1phos_04122005-02.03184.03184.2	2.6335	0.0628	2050.85	2052.419	1	418.1	50.0%	1	G.EVFIDFTKEKDIVGAVLK.A	2

ORFP:YPR034W

13.0%

477

53810

5.5

ARP7 SGDID:S0006238, Chr XVI from 639520-640953

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	PARC_cac1phos_04122005-02.02915.02915.2	3.4952	0.1681	2324.25	2324.645	1	335.9	37.5%	1	R.TVAGFSNVELPQCIIPSSYIK.R	2
*	PARC_cac1phos_04122005-03.04359.04359.2	4.2439	0.5268	2252.59	2253.792	1	1018.4	50.0%	1	K.LNVPVFQIVIEPLAIALSMGK.S	2
*	PARC_cac1phos_04122005-04.03382.03382.2	4.812	0.4022	2144.03	2144.54	1	901.1	50.0%	1	K.IQGWLGALTMANLPSWSLGK.W	2

U	ORFP:YER131W	3	6	12.6%	119	13447	10.9	RPS26B SGDID:S0000933, Chr V from 423948-424307
U	ORFP:YGL189C	3	6	12.6%	119	13505	10.8	RPS26A SGDID:S0003157, Chr VII from 148592-148233, reverse complement

Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
PARC_cac1phos_04122005-02.01610.01610.2	3.085	0.4206	1682.09	1682.868	1	392.0	53.6%	4	R.DLSEASVYPEYALPK.T	2
PARC_cac1phos_04122005-05.01758.01758.2	3.1397	0.2854	1568.13	1567.779	1	398.3	50.0%	1	D.LSEASVYPEYALPK.T	2
PARC_cac1phos_04122005-05.01583.01583.2	3.1856	0.314	1454.67	1454.62	1	663.1	70.8%	1	L.SEASVYPEYALPK.T	2

U	ORFP:YGL031C	3	11	12.3%	155	17614	11.3	RPL24A SGDID:S0002999, Chr VII from 437937-437470, reverse complement
U	ORFP:YGR148C	3	11	12.3%	155	17547	11.4	RPL24B SGDID:S0003380, Chr VII from 787781-787314, reverse complement

Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
PARC_cac1phos_04122005-03.02482.02482.1	2.0021	0.0511	1005.57	1006.236	224	162.8	57.1%	1	R.IAWTVLFR.K	1
PARC_cac1phos_04122005-05.02740.02740.2	3.2677	0.2724	1005.93	1006.236	1	1049.4	92.9%	9	R.IAWTVLFR.K	2
PARC_cac1phos_04122005-05.01272.01272.2	3.1227	0.2927	1136.21	1136.296	1	1032.0	75.0%	1	K.GAFQKVAATSR.-	2

ORFP:YDR190C

12.1%

463

50453

5.9

RVB1 SGDID:S0002598, Chr IV from 841987-840596, reverse complement

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	PARC_cac1phos_04122005-05.01414.01414.1	1.8043	0.2402	1373.58	1373.425	23	73.6	42.3%	1	V.NSSNSGAVTRTAAH.T	1
*	PARC_cac1phos_04122005-02.01830.01830.2	5.1459	0.4875	2596.45	2597.749	1	1233.1	52.2%	3	K.EVYEGEVTELTPEDAENPLGGYGK.T	2
*	PARC_cac1phos_04122005-03.02584.02584.2	3.9027	0.3596	1989.53	1990.276	1	890.2	61.8%	1	R.YALQLLAPCGILAQTSNR.K	2

ORFP:YAL038W

11.8%

500

54545

7.7

CDC19 SGDID:S0000036, Chr I from 71788-73290

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	PARC_cac1phos_04122005-02.01902.01902.2	4.3522	0.4385	1725.97	1725.937	1	752.4	65.6%	2	K.GVNLPGTDVDLPALSEK.D	2
*	PARC_cac1phos_04122005-02.02240.02240.2	2.8955	0.2274	1750.07	1750.045	2	354.5	50.0%	1	R.GDLGIEIPAPEVLAVQK.K	2
*	PARC_cac1phos_04122005-02.02998.02998.2	4.571	0.282	2522.49	2523.738	1	931.2	45.8%	1	R.AEVSDVGNAILDGADCVMLSGETAK.G	2

KERATIN21

11.8%

357

39219

5.2

no description

Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
PARC_cac1phos_04122005-04.00566.00566.2	2.9942	0.1865	1309.37	1309.422	1	984.1	72.2%	1	K.NKYEDEINKR.T	2 2 2 2
PARC_cac1phos_04122005-02.02730.02730.1	2.9634	0.1211	1329.77	1330.521	2	472.5	63.6%	2	R.NLDLDSIIAEVK.A	1 1 1 1
PARC_cac1phos_04122005-02.02766.02766.2	4.9511	0.3558	1330.31	1330.521	1	1515.3	86.4%	7	R.NLDLDSIIAEVK.A	2 2 2 2
PARC_cac1phos_04122005-02.02702.02702.1	2.032	0.0080	1103.81	1103.258	190	363.8	50.0%	1	L.DLDSIIAEVK.A	1 1 1 1 1
PARC_cac1phos_04122005-02.00916.00916.2	3.2065	0.3466	1108.13	1108.196	1	1074.4	87.5%	1	K.AQYEEIAQR.S	2 2 2 2
PARC_cac1phos_04122005-05.02115.02115.2	3.5663	0.3476	1264.35	1264.464	1	1537.7	85.0%	2	K.LALDVEIATYR.K	2 2 2 2 2 2

Similarities: KERATIN13(2:4)
KERATIN22(5:1)
KERATIN16(1:5)
KERATIN15(1:5)
KERATIN18(5:1)
KERATIN17(5:1)
KERATIN20(1:5)
KERATIN14(1:5)

ORFP:YGL030W

11.4%

105

11415

9.8

RPL30 SGDID:S0002998, Chr VII from 439094-439096,439327-439641

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	PARC_cac1phos_04122005-05.02118.02118.2	4.2354	0.3946	1294.73	1294.624	1	1281.0	81.8%	20	K.LIIIAANTPVLR.K	2

ORFP:YLR197W

11.3%

504

56864

8.9

SIK1 SGDID:S0004187, Chr XII from 546099-547613

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	PARC_cac1phos_04122005-02.03335.03335.2	2.7479	0.2818	2087.39	2088.408	4	426.1	35.3%	1	M.APIEYLLFEEPTGYAVFK.V	2
*	PARC_cac1phos_04122005-02.02419.02419.2	5.2082	0.5465	2218.11	2218.379	1	1373.8	57.1%	2	K.GAAEALENANDISEGLVSESLK.A	2
*	PARC_cac1phos_04122005-02.01878.01878.2	3.4245	0.3153	1898.55	1899.064	19	258.7	37.5%	1	R.IDNYSEEPSNVFGSVLK.K	2

ORFP:YFR037C

11.1%

557

63168

5.4

RSC8 SGDID:S0001933, Chr VI from 229173-227500, reverse complement

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	PARC_cac1phos_04122005-07.02556.02556.2	2.8459	0.3627	1528.61	1526.773	1	485.8	62.5%	2	R.LSPYEYLTITAVR.R	2
*	PARC_cac1phos_04122005-07.01668.01668.2	3.0848	0.3171	1973.47	1973.02	1	1104.0	56.2%	1	K.NVYDSAQDFNALQDESR.N	2
*	PARC_cac1phos_04122005-03.02831.02831.2	4.7519	0.3988	2050.29	2050.254	1	1559.4	58.8%	3	K.LMECVNDAVQTLLQGDDK.L	2
*	PARC_cac1phos_04122005-05.02656.02656.2	5.1101	0.3301	1664.95	1663.908	1	1815.8	76.9%	3	K.YIEESQAIIQELVK.L	2

ORFP:YER006W

10.8%

520

57709

8.9

NUG1 SGDID:S0000808, Chr V from 162722-164284

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*2	PARC_cac1phos_04122005-01.00963.00963.1	1.8389	0.0126	718.36	718.782	21	434.2	80.0%	1	L.EEIEAK.K	1 1
*	PARC_cac1phos_04122005-05.02334.02334.2	3.0542	0.3727	1563.47	1563.789	1	583.6	50.0%	1	K.LSQTTTASALLESLK.T	2
*	PARC_cac1phos_04122005-02.01862.01862.2	2.5531	0.1442	1907.27	1906.142	4	270.6	40.6%	1	K.LYEIPPIPANDADTFTK.H	2
*	PARC_cac1phos_04122005-02.03456.03456.2	3.8502	0.4446	1840.93	1841.077	1	1345.6	58.8%	1	K.GGIPNLASAGLSVLNDWR.D	2

Similarities: ORFP:YKL054C(1:3)

ORFP:YMR091C

10.8%

435

49651

5.0

NPL6 SGDID:S0004697, Chr XIII from 451364-450057, reverse complement

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	PARC_cac1phos_04122005-05.03252.03252.3	3.5521	0.0145	3890.0	3888.413	262	297.4	15.9%	1	F.YDRVKVLLVDQQGLRDAYTNILHIPESTQSTTVL.G	3
*	PARC_cac1phos_04122005-05.02107.02107.2	4.2913	0.3578	1594.35	1594.715	1	1381.5	75.0%	4	K.EIYEDVVDEDVLR.A	2

ORFP:YPL131W

10.8%

297

33715

6.8

RPL5 SGDID:S0006052, Chr XVI from 303120-304013

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	PARC_cac1phos_04122005-05.03704.03704.3	4.7271	0.4287	2336.18	2334.683	1	1292.2	33.3%	1	R.YGITHGLTNWAAAYATGLLIAR.R	3
*	PARC_cac1phos_04122005-05.01363.01363.1	2.024	0.2032	964.41	965.094	24	571.3	61.1%	1	R.VFGALKGASD.G	1

ORFP:YBL030C

10.4%

318

34426

9.8

PET9 SGDID:S0000126, Chr II from 163959-163003, reverse complement

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
	PARC_cac1phos_04122005-03.02519.02519.2	3.6074	0.3954	1446.97	1447.676	1	830.0	86.4%	2	R.YFPTQALNFAFK.D	2
*	PARC_cac1phos_04122005-05.04423.04423.2	4.6275	0.5821	2197.83	2199.631	1	1624.1	57.5%	3	R.GVAGAGVISMYDQLQMILFGK.K	2

ORFP:YDR310C

10.3%

1062

118201

6.2

SUM1 SGDID:S0002718, Chr IV from 1084307-1081119, reverse complement

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	PARC_cac1phos_04122005-02.03362.03362.2	4.7994	0.3543	1784.47	1783.93	1	1389.0	63.3%	1	K.DTSLTDSVQDLFNSLK.V	2
*	PARC_cac1phos_04122005-03.02266.02266.2	3.9091	0.3434	2516.57	2515.826	1	746.9	41.7%	1	K.SASNQGAPFSPVNITLPTAVVQTSK.S	2
*	PARC_cac1phos_04122005-05.01472.01472.2	4.022	0.4877	1891.09	1890.106	1	828.6	52.9%	1	K.FHQIPSSPSNPVSQPAPV.R	2
*	PARC_cac1phos_04122005-05.02300.02300.2	3.2578	0.3555	1679.07	1677.91	1	535.1	46.7%	1	K.VGIQSMLNSGEEAITK.E	2
*	PARC_cac1phos_04122005-02.02543.02543.2	3.7875	0.4892	2291.23	2292.462	2	590.9	34.8%	3	R.GVGNSGTLATVENVSGDISADLSK.G	2
*	PARC_cac1phos_04122005-06.01446.01446.2	2.8613	0.2777	1300.59	1300.546	1	976.9	66.7%	1	K.ALFALFEFWR.D	2

ORFP:YHR042W

10.0%

691

76772

5.2

NCP1 SGDID:S0001084, Chr VIII from 190534-192609

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	PARC_cac1phos_04122005-05.02474.02474.2	2.5851	0.05	1674.23	1672.836	145	309.5	35.3%	1	L.SAAGAIRLGKLGEADDGA.G	2
*	PARC_cac1phos_04122005-05.01924.01924.2	3.6428	0.5157	1337.51	1337.605	1	1626.7	79.2%	3	D.APPVVGVTTNLLR.N	2
*	PARC_cac1phos_04122005-04.02355.02355.2	4.4394	0.3832	2208.33	2209.612	1	636.0	45.2%	5	R.LPSNPSTPVIMIGPGTGVAPFR.G	2
*	PARC_cac1phos_04122005-02.02068.02068.2	3.6522	0.51	2034.45	2035.13	1	750.8	53.3%	2	R.NTDDFLYQDEWPEYAK.K	2

ORFP:YGL008C

9.9%

918

99619

5.1

PMA1 SGDID:S0002976, Chr VII from 482669-479913, reverse complement

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	PARC_cac1phos_04122005-02.01956.01956.2	4.6663	0.4183	2482.27	2481.716	1	957.3	54.8%	4	R.PVPEEYLQTDPSYGLTSDEVLK.R	2
	PARC_cac1phos_04122005-07.02755.02755.2	4.3824	0.4864	1805.25	1806.03	1	1224.9	59.4%	1	K.LSAIESLAGVEILCSDK.T	2 2
	PARC_cac1phos_04122005-05.04118.04118.3	6.9281	0.4971	3264.14	3263.562	1	1748.3	35.5%	3	R.LGLGGGGDMPGSELADFVENADGFAEVFPQHK.Y	3 3
	PARC_cac1phos_04122005-02.04078.04078.2	2.7619	0.0681	1987.81	1986.359	4	334.0	39.5%	1	R.SAADIVFLAPGLSAIIDALK.T	2 2
	PARC_cac1phos_04122005-03.03784.03784.2	3.5806	0.405	1641.65	1642.035	1	693.1	70.0%	1	D.IVFLAPGLSAIIDALK.T	2 2

Similarities: ORFP:YPL036W(4:1)

ORFP:YKL054C

9.9%

738

83973

5.0

DEF1 SGDID:S0001537, Chr XI from 338394-336178, reverse complement

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
2	PARC_cac1phos_04122005-01.00963.00963.1	1.8389	0.0126	718.36	718.739	21	434.2	80.0%	1	N.EELEAQ.G	1 1
*	PARC_cac1phos_04122005-05.00498.00498.3	5.3992	0.4196	3816.77	3816.973	1	509.3	23.4%	3	K.EQVKEEEQTAEELEQEQDNVAAPEEEVTVVEEK.V	3
*	PARC_cac1phos_04122005-02.01583.01583.3	3.7939	0.2589	3332.15	3332.421	1	671.8	24.1%	1	K.EEEQTAEELEQEQDNVAAPEEEVTVVEEK.V	3
*	PARC_cac1phos_04122005-05.01396.01396.1	2.0261	0.0426	1062.57	1061.137	1	342.9	70.8%	1	L.TSAAAAAAASPAT.A	1
*	PARC_cac1phos_04122005-03.01987.01987.2	3.6978	0.3672	2390.21	2389.672	1	789.8	50.0%	3	Q.SFPYGQPQYGVAGQYPYQLPK.N	2

Similarities: ORFP:YER006W(1:4)

ORFP:YAL035W

9.6%

1002

112268

5.8

FUN12 SGDID:S0000033, Chr I from 76429-79437

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	PARC_cac1phos_04122005-02.02519.02519.2	4.2674	0.4977	2117.41	2115.273	1	896.8	47.5%	2	R.EASASAEGAEAIEGDFMSTLK.Q	2
*	PARC_cac1phos_04122005-04.02484.02484.2	5.6494	0.501	2238.63	2238.502	1	2629.1	72.2%	3	K.IQLELAEQGLNSELYFQNK.N	2
*	PARC_cac1phos_04122005-03.04379.04379.3	5.2334	0.3773	3042.41	3043.571	1	809.0	27.8%	1	K.YVSIVPTSAVTGEGVPDLLWLLLELTQK.R	3
*	PARC_cac1phos_04122005-03.02068.02068.2	3.9435	0.4509	1376.69	1374.725	1	1694.2	83.3%	3	K.IPVMSIGLGPVYK.R	2
*	PARC_cac1phos_04122005-07.03150.03150.2	5.1333	0.457	1571.09	1570.888	1	1588.0	71.4%	1	R.GPMIIGVDVLEGTLR.V	2

ORFP:YHR181W

9.6%

228

26284

8.4

SVP26 SGDID:S0001224, Chr VIII from 467224-467910

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	PARC_cac1phos_04122005-03.01938.01938.2	2.8811	0.0094	2453.65	2455.129	1	439.5	38.1%	1	F.LTRAIYGIILILILLLLLDGFP.F	2
*2	PARC_cac1phos_04122005-05.02088.02088.2	2.5571	0.0924	1151.31	1150.618	5	605.5	66.7%	1	G.IILILILLLL.L	2
*2	PARC_cac1phos_04122005-05.02088.02088.2	2.5571	0.0924	1151.31	1150.618	5	605.5	66.7%	1	I.ILILILLLLL.D	2

ORFP:YBR127C

9.1%

517

57749

5.1

VMA2 SGDID:S0000331, Chr II from 492777-491224, reverse complement

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	PARC_cac1phos_04122005-05.01380.01380.2	2.8443	0.025	1202.53	1202.355	1	924.1	75.0%	1	D.INGSPINPYAR.I	2
*	PARC_cac1phos_04122005-02.03371.03371.2	3.389	0.4088	2400.81	2399.736	1	477.9	35.7%	1	R.IYPEEMISTGVSAIDTMNSIAR.G	2
*	PARC_cac1phos_04122005-03.02283.02283.2	2.5246	0.2321	1527.57	1526.819	17	239.7	50.0%	1	K.GIYPPINVLPSLSR.L	2

ORFP:YBL075C

8.8%

649

70547

5.2

SSA3 SGDID:S0000171, Chr II from 86443-84494, reverse complement

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
	PARC_cac1phos_04122005-02.00726.00726.1	1.8629	0.0591	687.41	687.814	23	401.9	66.7%	1	R.LIGDAAK.N	1 1 1 1 1 1 1 1 1
	PARC_cac1phos_04122005-02.01595.01595.2	2.7104	0.2867	1896.41	1896.067	4	257.2	40.6%	1	T.VNDAVVTVPAYFNDSQR.Q	2 2 2
	PARC_cac1phos_04122005-07.01363.01363.1	1.9478	0.1803	1012.49	1013.179	15	383.0	55.6%	1	R.IINEPTAAAI.A	1 1 1 1 1 1 1 1
*	PARC_cac1phos_04122005-03.03103.03103.2	2.7252	0.132	2590.55	2588.79	1	419.3	31.8%	1	K.SETFSTYADNQPGVLIQVFEGER.T	2

Similarities: ORFP:YDL229W(2:2)
ORFP:YNL209W(2:2)
ORFP:YLL024C(3:1)
ORFP:YAL005C(3:1)
ORFP:YER103W(2:2)
GR78_MOUSE(2:2)
GR78_YEAST(1:3)
GR78_HUMAN(2:2)

KERATIN05

8.5%

471

51531

5.2

no description

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	PARC_cac1phos_04122005-07.02496.02496.2	2.7402	0.1631	2056.95	2055.339	16	474.9	36.1%	1	K.ILTATVDNANVLLQIDNAR.L	2
*	PARC_cac1phos_04122005-02.01447.01447.2	4.9979	0.3627	2087.17	2087.269	1	943.1	57.5%	2	R.GQVGGDVNVEMDAAPGVDLSR.I	2

U	ORFP:YHL001W	1	17	8.0%	138	15153	10.9	RPL14B SGDID:S0000993, Chr VIII from 104270-104398,104797-105084
U	ORFP:YKL006W	1	17	8.0%	138	15167	10.9	RPL14A SGDID:S0001489, Chr XI from 431544-431672,432071-432358

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
	PARC_cac1phos_04122005-05.02184.02184.2	4.7717	0.3206	1215.35	1213.46	1	2134.0	90.0%	17	K.LAAIVEIIDQK.K	2

ORFP:YIL126W

7.9%

1359

156742

6.7

STH1 SGDID:S0001388, Chr IX from 117992-122071

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	PARC_cac1phos_04122005-02.02282.02282.2	3.4381	0.3132	1754.69	1754.888	1	626.2	64.3%	1	K.DTDVPDYFLDLPDTK.N	2
*	PARC_cac1phos_04122005-05.01274.01274.2	2.9808	0.3492	949.09	949.054	1	1297.9	87.5%	1	D.SPFTAAAQR.S	2
*	PARC_cac1phos_04122005-04.04024.04024.2	3.636	0.1617	2518.39	2518.999	1	438.9	45.2%	1	D.IGPFLVIVPLSTITNWTLEFEK.W	2
*	PARC_cac1phos_04122005-05.04120.04120.2	3.5223	0.1973	1890.77	1889.199	3	439.1	43.3%	1	R.VGNFDVLLTTYEYIIK.D	2
*	PARC_cac1phos_04122005-02.02688.02688.2	3.2415	0.2945	2132.75	2134.266	1	317.9	35.3%	2	K.TFEDWFNTPFANTGTQEK.L	2
*	PARC_cac1phos_04122005-03.02028.02028.2	4.4463	0.2914	1679.53	1678.987	1	1251.4	65.4%	4	K.LSGLQQQLYQQMLK.H	2
*	PARC_cac1phos_04122005-04.02318.02318.2	3.4284	0.3938	1618.51	1617.837	1	1271.5	69.2%	2	R.LITTDSVEEVILER.A	2

ORFP:YOR275C

7.6%

661

75947

5.9

RIM20 SGDID:S0005801, Chr XV from 841066-839081, reverse complement

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	PARC_cac1phos_04122005-03.03419.03419.2	2.8657	0.1245	2055.71	2057.401	6	406.0	44.1%	1	W.FKAVQDKHKDSLIAKLSQ.Q	2
*	PARC_cac1phos_04122005-03.03822.03822.3	3.5041	0.0912	3771.92	3770.271	1	936.3	25.8%	1	E.LYIEDLRYSFKLLDEVKENLSAGTAFYENLIT.S	3

ORFP:YPL036W

7.3%

947

102172

5.0

PMA2 SGDID:S0005957, Chr XVI from 482839-485682

Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
PARC_cac1phos_04122005-07.02755.02755.2	4.3824	0.4864	1805.25	1806.03	1	1224.9	59.4%	1	K.LSAIESLAGVEILCSDK.T	2 2
PARC_cac1phos_04122005-05.04118.04118.3	6.9281	0.4971	3264.14	3263.562	1	1748.3	35.5%	3	R.LGLGGGGDMPGSELADFVENADGFAEVFPQHK.Y	3 3
PARC_cac1phos_04122005-02.04078.04078.2	2.7619	0.0681	1987.81	1986.359	4	334.0	39.5%	1	R.SAADIVFLAPGLSAIIDALK.T	2 2
PARC_cac1phos_04122005-03.03784.03784.2	3.5806	0.405	1641.65	1642.035	1	693.1	70.0%	1	D.IVFLAPGLSAIIDALK.T	2 2

Similarities: ORFP:YGL008C(4:0)

ORFP:YPL235W

7.2%

471

51612

5.3

RVB2 SGDID:S0006156, Chr XVI from 103232-104647

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	PARC_cac1phos_04122005-05.01486.01486.2	2.8618	0.2393	1453.47	1453.722	16	471.8	43.3%	1	R.AVLVAGPPSTGKTALA.M	2
*	PARC_cac1phos_04122005-07.02928.02928.2	4.5635	0.3535	1992.27	1991.157	1	1468.5	61.8%	1	R.AQEEEVELSSDALDLLTK.T	2

ORFP:YHL008C

6.9%

627

69969

7.7

YHL008C SGDID:S0001000, Chr VIII from 94505-92622, reverse complement

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	PARC_cac1phos_04122005-02.02490.02490.2	2.9249	0.2019	2520.85	2522.947	5	212.6	30.4%	3	K.ARLQLDTLLINSILGGVLFSSGSF.L	2
*	PARC_cac1phos_04122005-04.01956.01956.2	2.6865	0.161	1942.29	1943.268	5	408.9	38.9%	2	M.SASFIAMLNGANVSVGKYI.W	2

ORFP:YLR342W

6.4%

1876

214849

7.2

FKS1 SGDID:S0004334, Chr XII from 809997-815627

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	PARC_cac1phos_04122005-02.03370.03370.2	2.9688	0.2186	2241.85	2242.536	1	604.8	44.4%	1	K.IVGYDDLNQLFWYPEGIAK.I	2
*	PARC_cac1phos_04122005-02.02144.02144.2	3.7378	0.4005	2090.35	2090.315	1	1126.2	52.8%	1	R.VENPEIVQMFGGNAEGLER.E	2
*	PARC_cac1phos_04122005-02.02451.02451.2	4.7859	0.4848	2645.83	2646.867	1	989.6	52.3%	1	R.AYPDLQIAYLDEEPPLTEGEEPR.I	2
	PARC_cac1phos_04122005-07.02776.02776.2	4.7991	0.4284	2430.49	2429.609	1	779.5	52.6%	1	R.GEYIQLIDANQDNYLEECLK.I	2 2
*	PARC_cac1phos_04122005-05.03411.03411.2	3.3565	0.2439	2474.65	2475.761	1	880.6	45.2%	1	R.SVLAEFEELNVEQVNPYAPGLR.Y	2
	PARC_cac1phos_04122005-05.02258.02258.2	5.6981	0.5938	1856.47	1857.027	1	1844.1	76.5%	1	R.EYIFSENSGVLGDVAAGK.E	2 2

Similarities: ORFP:YGR032W(2:4)

ORFP:YER103W

6.2%

642

69651

5.1

SSA4 SGDID:S0000905, Chr V from 364585-366513

Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
PARC_cac1phos_04122005-02.00726.00726.1	1.8629	0.0591	687.41	687.814	23	401.9	66.7%	1	R.LIGDAAK.N	1 1 1 1 1 1 1 1 1
PARC_cac1phos_04122005-07.01363.01363.1	1.9478	0.1803	1012.49	1013.179	15	383.0	55.6%	1	R.IINEPTAAAI.A	1 1 1 1 1 1 1 1
PARC_cac1phos_04122005-05.03455.03455.2	3.6329	0.4311	2585.67	2586.817	1	437.7	36.4%	1	K.SEVFSTYADNQPGVLIQVFEGER.T	2 2

Similarities: ORFP:YDL229W(2:1)
ORFP:YNL209W(2:1)
ORFP:YLL024C(3:0)
ORFP:YAL005C(2:1)
ORFP:YBL075C(2:1)
GR78_MOUSE(2:1)
GR78_YEAST(1:2)
GR78_HUMAN(2:1)

KERATIN16

6.0%

534

57265

6.6

no description

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
	PARC_cac1phos_04122005-02.01272.01272.2	4.0135	0.0291	1476.45	1477.701	1	1941.1	90.9%	1	Q.FLEQQNKVLETK.W	2 2 2
	PARC_cac1phos_04122005-02.00916.00916.2	3.2065	0.3466	1108.13	1108.196	1	1074.4	87.5%	1	R.AQYEEIAQR.S	2 2 2 2
2	PARC_cac1phos_04122005-04.02194.02194.2	4.4698	0.3319	1278.63	1278.491	1	2323.9	90.0%	24	K.LALDIEIATYR.K	2 2 2 2
2	PARC_cac1phos_04122005-05.02387.02387.1	2.633	0.1668	1279.1	1278.491	23	256.3	55.0%	1	K.LALDIEIATYR.K	1 1 1 1
2	PARC_cac1phos_04122005-05.01362.01362.1	1.8968	0.0764	865.43	866.005	3	309.5	83.3%	1	D.IEIATYR.K	1 1 1 1

Similarities: KERATIN13(3:2)
KERATIN22(1:4)
KERATIN21(1:4)
KERATIN15(1:4)
KERATIN18(1:4)
KERATIN20(3:2)
KERATIN14(1:4)
KERATIN19(3:2)

ORFP:YHR064C

5.9%

538

58238

5.1

SSZ1 SGDID:S0001106, Chr VIII from 227142-225526, reverse complement

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	PARC_cac1phos_04122005-05.03570.03570.3	3.5187	0.1092	3660.59	3662.056	5	364.8	18.5%	1	S.ALSYVGEDEYHGGQALQQLIRNPKNTIINFRD.F	3
*	PARC_cac1phos_04122005-07.03266.03266.2	2.6313	0.0076	1673.99	1674.903	10	581.9	46.4%	1	Y.HGGQALQQLIRNPKN.T	2
*	PARC_cac1phos_04122005-02.02295.02295.2	2.905	0.042	2082.99	2084.429	2	714.6	46.9%	2	A.LQQLIRNPKNTIINFRD.F	2

ORFP:YNL206C

5.9%

455

51621

4.5

RTT106 SGDID:S0005150, Chr XIV from 258152-256785, reverse complement

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	PARC_cac1phos_04122005-03.02274.02274.2	2.875	0.3453	1517.31	1517.808	1	613.9	62.5%	2	A.SFLPVPEKPNLIY.L	2
*	PARC_cac1phos_04122005-02.01891.01891.2	3.5658	0.2997	1566.27	1565.72	1	1475.0	76.9%	1	K.NLGLLDSNVTDFEK.C	2

ORFP:YNL088W

5.7%

1428

164214

7.0

TOP2 SGDID:S0005032, Chr XIV from 457701-461987

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	PARC_cac1phos_04122005-05.02268.02268.2	3.9174	0.3599	1766.67	1765.958	1	1174.5	56.7%	1	F.STEFILETADLNVGQK.Y	2
*	PARC_cac1phos_04122005-04.03519.03519.2	3.1387	0.1651	2505.69	2503.841	2	600.8	35.0%	1	K.NNMFIFINCLIENPAFTSQTK.E	2
*	PARC_cac1phos_04122005-05.02327.02327.2	3.2343	0.3289	1501.49	1501.679	1	998.2	66.7%	1	R.GWTGTIEEIEPLR.Y	2
*	PARC_cac1phos_04122005-07.02542.02542.2	4.611	0.2621	1911.53	1911.163	1	1846.5	65.6%	2	R.IEQIGDNVLEITELPAR.T	2
*	PARC_cac1phos_04122005-05.03594.03594.2	4.2676	0.4667	1897.61	1897.094	1	963.0	64.3%	1	K.YNSVNEILSEFYYVR.L	2

KERATIN15

5.7%

629

64511

6.5

no description

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
	PARC_cac1phos_04122005-02.01272.01272.2	4.0135	0.0291	1476.45	1477.701	1	1941.1	90.9%	1	R.FLEQQNKVLETK.W	2 2 2
*	PARC_cac1phos_04122005-03.02730.02730.1	3.2015	0.3666	1302.58	1303.452	1	843.7	58.3%	6	R.SLDLDSIIAEVGA.Q	1
*	PARC_cac1phos_04122005-02.02787.02787.2	4.8979	0.3114	1303.41	1303.452	1	1754.4	79.2%	10	R.SLDLDSIIAEVGA.Q	2
	PARC_cac1phos_04122005-05.02115.02115.2	3.5663	0.3476	1264.35	1264.464	1	1537.7	85.0%	2	K.LALDVEIATYR.K	2 2 2 2 2 2

Similarities: KERATIN22(1:3)
KERATIN21(1:3)
KERATIN16(1:3)
KERATIN18(1:3)
KERATIN17(1:3)
KERATIN14(2:2)

KERATIN18

5.7%

562

59822

8.0

no description

Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
PARC_cac1phos_04122005-02.02730.02730.1	2.9634	0.1211	1329.77	1330.521	2	472.5	63.6%	2	R.NLDLDSIIAEVK.A	1 1 1 1
PARC_cac1phos_04122005-02.02766.02766.2	4.9511	0.3558	1330.31	1330.521	1	1515.3	86.4%	7	R.NLDLDSIIAEVK.A	2 2 2 2
PARC_cac1phos_04122005-02.02702.02702.1	2.032	0.0080	1103.81	1103.258	190	363.8	50.0%	1	L.DLDSIIAEVK.A	1 1 1 1 1
PARC_cac1phos_04122005-02.00916.00916.2	3.2065	0.3466	1108.13	1108.196	1	1074.4	87.5%	1	K.AQYEEIAQR.S	2 2 2 2
PARC_cac1phos_04122005-05.02115.02115.2	3.5663	0.3476	1264.35	1264.464	1	1537.7	85.0%	2	K.LALDVEIATYR.K	2 2 2 2 2 2

Similarities: KERATIN13(1:4)
KERATIN22(5:0)
KERATIN21(5:0)
KERATIN16(1:4)
KERATIN15(1:4)
KERATIN17(4:1)
KERATIN14(1:4)

U	GR78_MOUSE	3	3	5.6%	655	72421	5.2	owl\|P20029\| 78 KD GLUCOSE REGULATED PROTEIN PRECURSOR (GRP 78) (IMMUNOGLOBULIN...
U	GR78_RAT	3	3	5.7%	654	72347	5.2	owl\|P06761\| 78 KD GLUCOSE REGULATED PROTEIN PRECURSOR (GRP 78) (IMMUNOGLOBULIN...

Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
PARC_cac1phos_04122005-02.00726.00726.1	1.8629	0.0591	687.41	687.814	23	401.9	66.7%	1	R.LIGDAAK.N	1 1 1 1 1 1 1 1 1
PARC_cac1phos_04122005-07.01363.01363.1	1.9478	0.1803	1012.49	1013.179	15	383.0	55.6%	1	R.IINEPTAAAI.A	1 1 1 1 1 1 1 1
PARC_cac1phos_04122005-04.01571.01571.2	2.8418	0.1902	2037.99	2037.144	2	519.4	39.5%	1	I.SKLYGSGGPPPTGEEDTSEK.D	2

Similarities: ORFP:YDL229W(2:1)
ORFP:YNL209W(2:1)
ORFP:YLL024C(2:1)
ORFP:YAL005C(2:1)
ORFP:YBL075C(2:1)
ORFP:YER103W(2:1)
GR78_YEAST(1:2)
GR78_HUMAN(2:1)

KERATIN17

5.6%

590

62461

8.1

no description

Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
PARC_cac1phos_04122005-04.00566.00566.2	2.9942	0.1865	1309.37	1309.422	1	984.1	72.2%	1	K.NKYEDEINKR.T	2 2 2 2
PARC_cac1phos_04122005-02.02730.02730.1	2.9634	0.1211	1329.77	1330.521	2	472.5	63.6%	2	R.NLDLDSIIAEVK.A	1 1 1 1
PARC_cac1phos_04122005-02.02766.02766.2	4.9511	0.3558	1330.31	1330.521	1	1515.3	86.4%	7	R.NLDLDSIIAEVK.A	2 2 2 2
PARC_cac1phos_04122005-02.02702.02702.1	2.032	0.0080	1103.81	1103.258	190	363.8	50.0%	1	L.DLDSIIAEVK.A	1 1 1 1 1
PARC_cac1phos_04122005-05.02115.02115.2	3.5663	0.3476	1264.35	1264.464	1	1537.7	85.0%	2	K.LALDVEIATYR.K	2 2 2 2 2 2

Similarities: KERATIN13(2:3)
KERATIN22(4:1)
KERATIN21(5:0)
KERATIN15(1:4)
KERATIN18(4:1)
KERATIN20(1:4)
KERATIN14(1:4)

U	GR78_YEAST	2	2	5.4%	682	74468	4.9	owl\|P16474\| 78 KD GLUCOSE REGULATED PROTEIN HOMOLOG PRECURSOR (GRP 78) (IMMUNOGLOBULIN...
U	ORFP:YJL034W	2	2	5.4%	682	74468	4.9	KAR2 SGDID:S0003571, Chr X from 381023-383071

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
	PARC_cac1phos_04122005-02.00726.00726.1	1.8629	0.0591	687.41	687.814	23	401.9	66.7%	1	R.LIGDAAK.N	1 1 1 1 1 1 1 1 1
	PARC_cac1phos_04122005-02.01780.01780.3	3.8671	0.3112	3274.46	3272.11	4	524.7	20.7%	1	K.LYGGADGSGAADYDDEDEDDDGDYFEHDEL.-	3

Similarities: ORFP:YDL229W(1:1)
ORFP:YNL209W(1:1)
ORFP:YLL024C(1:1)
ORFP:YAL005C(1:1)
ORFP:YBL075C(1:1)
ORFP:YER103W(1:1)
GR78_MOUSE(1:1)
GR78_HUMAN(1:1)

ORFP:YJL165C

5.3%

855

95455

8.4

HAL5 SGDID:S0003701, Chr X from 109453-106886, reverse complement

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	PARC_cac1phos_04122005-05.03032.03032.2	2.6914	0.0488	2850.85	2853.173	4	408.6	31.8%	1	A.YVPHHRYTVGSDEVERQPRERLK.N	2
*	PARC_cac1phos_04122005-03.03080.03080.2	2.5953	0.1125	2406.19	2404.585	26	375.3	28.6%	1	N.SNATNNVGNGTGNRIYMRGRNH.S	2

ORFP:YOR355W

5.2%

522

57048

8.7

GDS1 SGDID:S0005882, Chr XV from 1005131-1006699

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	PARC_cac1phos_04122005-04.02655.02655.2	3.2235	0.2769	2730.85	2730.994	1	569.6	34.6%	15	S.PDSSLSHNASSNTYVTAAAAAPRLSKL.L	2

ORFP:YGR130C

4.7%

816

92698

5.0

YGR130C SGDID:S0003362, Chr VII from 753846-751396, reverse complement

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	PARC_cac1phos_04122005-02.02664.02664.2	2.5319	0.1426	1918.87	1919.114	23	233.6	40.0%	1	K.LQDLQNQIDEIENSMK.A	2
*	PARC_cac1phos_04122005-03.03538.03538.3	3.7598	0.1985	2852.03	2853.102	29	378.7	26.1%	1	K.LQDLQNQIDEIENSMKAMREETSE.K	3
*	PARC_cac1phos_04122005-07.02416.02416.2	2.5306	0.0213	1654.25	1652.798	40	311.8	46.2%	1	T.YNDQLTELQDKLAT.E	2

ORFP:YFR009W

4.4%

752

85027

6.2

GCN20 SGDID:S0001905, Chr VI from 162482-164740

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	PARC_cac1phos_04122005-04.03676.03676.2	2.8366	0.2164	2485.95	2484.769	5	157.5	29.5%	1	N.NPHILVLDEPSNHLDTTGLDALV.E	2
*	PARC_cac1phos_04122005-02.03019.03019.2	2.6682	0.0888	2387.17	2386.624	10	239.6	29.5%	1	P.SNHLDTTGLDALVEALKNFNGGV.L	2

ORFP:YOR038C

4.3%

875

98445

8.3

HIR2 SGDID:S0005564, Chr XV from 405387-402760, reverse complement

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	PARC_cac1phos_04122005-03.03035.03035.2	3.8599	0.448	1930.33	1931.285	1	661.1	53.1%	1	K.LAFPTNTIYPLLNPSLR.Y	2
*	PARC_cac1phos_04122005-05.02408.02408.2	5.0158	0.3919	2254.83	2255.357	1	1278.0	50.0%	1	K.ANTDSFNGSESNINEIVSDIK.N	2

KERATIN20

4.3%

483

53748

5.4

no description

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
	PARC_cac1phos_04122005-04.00566.00566.2	2.9942	0.1865	1309.37	1309.422	1	984.1	72.2%	1	K.NKYEDEINKR.T	2 2 2 2
2	PARC_cac1phos_04122005-04.02194.02194.2	4.4698	0.3319	1278.63	1278.491	1	2323.9	90.0%	24	K.LALDIEIATYR.K	2 2 2 2
2	PARC_cac1phos_04122005-05.02387.02387.1	2.633	0.1668	1279.1	1278.491	23	256.3	55.0%	1	K.LALDIEIATYR.K	1 1 1 1
2	PARC_cac1phos_04122005-05.01362.01362.1	1.8968	0.0764	865.43	866.005	3	309.5	83.3%	1	D.IEIATYR.K	1 1 1 1

Similarities: KERATIN13(4:0)
KERATIN21(1:3)
KERATIN16(3:1)
KERATIN17(1:3)
KERATIN19(3:1)

ORFP:YFL001W

4.1%

442

50889

9.3

DEG1 SGDID:S0001895, Chr VI from 147126-148454

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	PARC_cac1phos_04122005-05.02346.02346.2	3.0979	0.1395	2083.27	2084.303	3	651.4	44.1%	10	V.CNIFKDVLPTANTNNFSK.T	2

ORFP:YHR103W

3.8%

852

96398

8.0

SBE22 SGDID:S0001145, Chr VIII from 320416-322974

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	PARC_cac1phos_04122005-07.02300.02300.2	3.0824	0.0419	2087.81	2086.352	67	365.8	38.2%	1	D.FQFIQDTTKSLASVYLHS.S	2
*	PARC_cac1phos_04122005-05.02416.02416.2	2.5541	0.0412	1650.47	1651.773	6	478.9	46.2%	1	V.SESFQNLGLNEIWN.I	2

ORFP:YGL013C

3.7%

1068

121793

6.9

PDR1 SGDID:S0002981, Chr VII from 472301-469095, reverse complement

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	PARC_cac1phos_04122005-05.02359.02359.2	5.5449	0.5718	2448.59	2449.587	1	2164.3	61.9%	2	R.NGFYEDDSESQATLTSLQTTLK.N	2
*	PARC_cac1phos_04122005-07.02887.02887.2	3.3064	0.4005	2043.15	2044.287	1	856.1	44.1%	1	K.NSYQNFLMEITSNPSVAK.N	2

ORFP:YPR115W

3.7%

1083

120395

9.3

YPR115W SGDID:S0006319, Chr XVI from 754873-758124

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	PARC_cac1phos_04122005-07.03084.03084.2	3.0218	0.0136	1675.25	1673.823	88	357.8	40.0%	1	P.ATPGSTRSSSRNLELP.K	2
*	PARC_cac1phos_04122005-02.03974.03974.2	2.5953	0.0454	2751.51	2754.183	93	129.7	28.3%	1	Y.SALIDSEARLMIKNLCHELQQGIL.S	2

KERATIN14

3.6%

638

65871

8.1

no description

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
	PARC_cac1phos_04122005-02.01272.01272.2	4.0135	0.0291	1476.45	1477.701	1	1941.1	90.9%	1	R.FLEQQNKVLETK.W	2 2 2
	PARC_cac1phos_04122005-05.02115.02115.2	3.5663	0.3476	1264.35	1264.464	1	1537.7	85.0%	2	K.LALDVEIATYR.K	2 2 2 2 2 2

Similarities: KERATIN22(1:1)
KERATIN21(1:1)
KERATIN16(1:1)
KERATIN15(2:0)
KERATIN18(1:1)
KERATIN17(1:1)

ORFP:YML010W

3.3%

1063

115650

5.2

SPT5 SGDID:S0004470, Chr XIII from 247677-250868

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	PARC_cac1phos_04122005-05.03419.03419.2	2.7527	0.4102	1830.59	1829.32	1	554.5	60.0%	1	K.LLIPVQELPLLLKPNK.S	2
*	PARC_cac1phos_04122005-07.03134.03134.2	2.7649	0.1653	2121.69	2120.441	4	437.5	38.9%	1	K.GDLAMVDQISENNLEVMLK.I	2

ORFP:YGR032W

3.2%

1895

216988

7.0

GSC2 SGDID:S0003264, Chr VII from 548265-553952

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	PARC_cac1phos_04122005-02.03439.03439.2	2.6702	0.0809	2433.97	2436.467	9	236.4	31.0%	1	D.PNEQYVDGTQFPQGQDPSQDQG.P	2
	PARC_cac1phos_04122005-07.02776.02776.2	4.7991	0.4284	2430.49	2429.609	1	779.5	52.6%	1	R.GEYIQLIDANQDNYLEECLK.I	2 2
	PARC_cac1phos_04122005-05.02258.02258.2	5.6981	0.5938	1856.47	1857.027	1	1844.1	76.5%	1	R.EYIFSENSGVLGDVAAGK.E	2 2

Similarities: ORFP:YLR342W(2:1)

ORFP:YPR105C

2.8%

861

98665

6.1

COG4 SGDID:S0006309, Chr XVI from 739565-736980, reverse complement

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	PARC_cac1phos_04122005-07.01744.01744.2	3.4492	0.0422	1649.19	1646.835	2	1146.1	60.7%	1	S.TLSQIDKLSEVIAND.Y	2
*	PARC_cac1phos_04122005-05.01615.01615.1	1.9696	0.0832	973.58	973.111	6	375.3	62.5%	1	I.VLLLGLDDD.N	1

ORFP:YPL216W

2.6%

1102

128133

7.3

YPL216W SGDID:S0006137, Chr XVI from 143820-147128

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	PARC_cac1phos_04122005-05.02450.02450.2	2.6398	0.0703	1783.43	1785.012	7	687.2	54.2%	1	P.WRVKQEYIERYDV.N	2
*	PARC_cac1phos_04122005-05.03027.03027.2	2.5246	0.0534	2023.37	2024.246	52	273.7	40.0%	1	M.NFVNLGDELWDNFRKR.L	2

U	GR78_HUMAN	2	2	2.6%	653	72116	5.1	owl\|P11021\| 78 KD GLUCOSE REGULATED PROTEIN PRECURSOR (GRP 78) (IMMUNOGLOBULIN...
U	GR78_MESAU	2	2	2.6%	654	72379	5.2	owl\|P07823\| 78 KD GLUCOSE REGULATED PROTEIN PRECURSOR (GRP 78) (IMMUNOGLOBULIN...

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
	PARC_cac1phos_04122005-02.00726.00726.1	1.8629	0.0591	687.41	687.814	23	401.9	66.7%	1	R.LIGDAAK.N	1 1 1 1 1 1 1 1 1
	PARC_cac1phos_04122005-07.01363.01363.1	1.9478	0.1803	1012.49	1013.179	15	383.0	55.6%	1	R.IINEPTAAAI.A	1 1 1 1 1 1 1 1

Similarities: ORFP:YDL229W(2:0)
ORFP:YNL209W(2:0)
ORFP:YLL024C(2:0)
ORFP:YAL005C(2:0)
ORFP:YBL075C(2:0)
ORFP:YER103W(2:0)
GR78_MOUSE(2:0)
GR78_YEAST(1:1)

ORFP:YOR290C

2.5%

1703

194050

7.0

SNF2 SGDID:S0005816, Chr XV from 860255-855144, reverse complement

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	PARC_cac1phos_04122005-05.02863.02863.2	2.7541	0.0204	2402.11	2399.536	1	416.9	35.7%	1	E.NETISNVAKTAPNSNKTHTEQN.N	2
*	PARC_cac1phos_04122005-03.03592.03592.2	2.8678	0.204	2309.61	2309.667	3	256.6	35.0%	1	R.GPYLVIVPLSTLSNWSSEFAK.W	2

ORFP:YIL115C

2.5%

1460

158907

4.8

NUP159 SGDID:S0001377, Chr IX from 148706-144324, reverse complement

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	PARC_cac1phos_04122005-04.02155.02155.2	2.5358	0.1488	2369.69	2370.537	1	422.6	31.2%	1	S.FGTPSFGSGNSSVEPPASGSAFGKP.S	2
*	PARC_cac1phos_04122005-05.01651.01651.2	2.7858	0.0724	1272.31	1273.429	8	651.9	63.6%	1	D.IAQITEDVANAK.E	2

U	ORFP:YHL009W-B	2	3	2.4%	1802	207969	8.4	YHL009W-B SGDID:S0007372, Chr VIII from 85904-86989,86991-91313
U	ORFP:YJL113W	2	3	2.4%	1803	207708	8.0	YJL113W SGDID:S0003649, Chr X from 197614-198699,198701-203026

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
	PARC_cac1phos_04122005-02.03399.03399.2	2.5708	0.0548	2378.17	2379.629	2	287.7	31.6%	1	V.DLVEKIQLLETNENNNILHE.H	2
	PARC_cac1phos_04122005-03.02578.02578.2	2.7156	0.1702	2731.97	2733.27	1	431.3	34.8%	2	I.ADLLTKPVSASDFKRFIQVLKNKI.T	2

ORFP:YGL173C

2.4%

1528

175459

7.5

KEM1 SGDID:S0003141, Chr VII from 180117-175531, reverse complement

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	PARC_cac1phos_04122005-02.01667.01667.2	4.9389	0.5269	2181.99	2183.265	1	997.8	61.8%	2	K.MDLDSINPDETEEEFQNR.V	2
*	PARC_cac1phos_04122005-03.03456.03456.2	3.0575	0.3506	1872.21	1872.276	2	424.8	38.2%	1	K.IGPMEAIATVFPVTGLVR.D	2

ORFP:YOR127W

2.4%

1007

112831

6.4

RGA1 SGDID:S0005653, Chr XV from 561170-564193

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	PARC_cac1phos_04122005-02.03194.03194.2	4.0902	0.1418	2206.89	2206.241	1	1149.2	52.9%	3	N.SDNFEEQKETLYENSESR.N	2
*5	PARC_cac1phos_04122005-02.00930.00930.1	2.2038	0.3916	792.42	792.997	9	624.5	80.0%	2	H.YLKQLK.I	1 1

Similarities: ORFP:YPR018W(1:1)

KERATIN19

2.4%

468

51203

5.5

no description

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
2	PARC_cac1phos_04122005-04.02194.02194.2	4.4698	0.3319	1278.63	1278.491	1	2323.9	90.0%	24	K.LALDIEIATYR.K	2 2 2 2
2	PARC_cac1phos_04122005-05.02387.02387.1	2.633	0.1668	1279.1	1278.491	23	256.3	55.0%	1	K.LALDIEIATYR.K	1 1 1 1
2	PARC_cac1phos_04122005-05.01362.01362.1	1.8968	0.0764	865.43	866.005	3	309.5	83.3%	1	D.IEIATYR.K	1 1 1 1

Similarities: KERATIN13(3:0)
KERATIN16(3:0)
KERATIN20(3:0)

ORFP:YGR271W

2.3%

1967

224828

6.5

SLH1 SGDID:S0003503, Chr VII from 1031795-1037698

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	PARC_cac1phos_04122005-04.03788.03788.3	3.804	0.1505	3249.35	3247.688	89	323.1	18.5%	1	I.NEAETTLSSNVLLETVLQMVYKHQKQEL.E	3
*	PARC_cac1phos_04122005-03.03620.03620.2	2.7818	0.0284	2103.23	2102.455	80	209.3	37.5%	1	L.QNPLIESIYPFKYFNPM.Q	2

ORFP:YKL215C

2.3%

1286

140427

6.8

YKL215C SGDID:S0001698, Chr XI from 30688-26828, reverse complement

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	PARC_cac1phos_04122005-02.01758.01758.2	2.8431	0.0107	2104.23	2105.525	5	519.7	44.1%	1	I.FNLNIKKVVPLYDTVVEI.D	2
*	PARC_cac1phos_04122005-02.02124.02124.1	1.9489	0.0571	1247.54	1248.439	23	254.1	60.0%	1	K.NNNIPLIGFDM.G	1

ORFP:YKL072W

2.3%

766

88836

8.6

STB6 SGDID:S0001555, Chr XI from 299223-301523

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	PARC_cac1phos_04122005-03.02031.02031.2	3.3961	0.0633	2086.73	2085.556	1	640.5	44.1%	15	D.IFKFKKVVKSTVQDMTGK.G	2

ORFP:YOR011W

2.0%

1394

157750

7.2

AUS1 SGDID:S0005537, Chr XV from 349678-353862

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	PARC_cac1phos_04122005-07.02904.02904.2	2.5885	0.03	1672.71	1673.961	411	240.9	37.5%	1	E.RNNSRLTRWLPFL.N	2
*	PARC_cac1phos_04122005-06.01130.01130.2	2.5043	0.1031	1913.49	1914.056	28	331.8	39.3%	1	G.DDFLKNENMSYDHVW.R	2

ORFP:YOR153W

1.9%

1511

170437

7.8

PDR5 SGDID:S0005679, Chr XV from 619840-624375

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	PARC_cac1phos_04122005-02.03631.03631.2	3.1348	0.0655	2337.55	2339.487	211	257.3	29.5%	1	P.GSGCTTLLKSISSNTHGFDLGAD.T	2
*2	PARC_cac1phos_04122005-07.01514.01514.1	1.9463	0.1612	744.63	744.955	43	380.9	80.0%	1	E.ILVFPR.S	1 1 1

Similarities: ORFP:YDL082W(1:1)
ORFP:YMR142C(1:1)

ORFP:YNR016C

1.6%

2233

250351

6.3

ACC1 SGDID:S0005299, Chr XIV from 661371-654670, reverse complement

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	PARC_cac1phos_04122005-02.01926.01926.2	2.8705	0.0019	2509.75	2506.877	48	156.0	28.6%	1	S.TLENILKGYDNQVIMNASLQQL.I	2
*	PARC_cac1phos_04122005-05.02406.02406.2	2.638	0.0702	1572.65	1574.87	44	443.8	45.8%	1	N.KVTEYARKRGIPR.I	2

ORFP:YDR127W

1.4%

1588

174754

6.3

ARO1 SGDID:S0002534, Chr IV from 704477-709243

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	PARC_cac1phos_04122005-01.03214.03214.2	2.5474	0.0143	1580.91	1581.816	37	178.6	46.2%	1	K.KVVILESIGKCYGD.S	2
*	PARC_cac1phos_04122005-07.01708.01708.1	1.8795	0.0019	934.57	935.065	8	580.1	78.6%	1	S.EFNIIGIE.S	1

	Proteins	Peptide IDs	Copies
Unfiltered	4745	18164	21216
Redundant	185	874	3683
Nonredundant	151	725	3108

/data/1/aobailey/Kaufman/cac1phos_04122005/parc