D parc

DTASelect v1.9
/data/1/aobailey/Antczak/3912_02032005/parc
/scratch/yates/yrcdb/yeastorf5.fasta
SEQUEST 2.7 in SQT format.

Jump to the summary table.

sequest.params modifications:

*	X	0.0
#	X	0.0
@	X	0.0
Static	C	57.0

true	Use criteria
1.8	Minimum +1 XCorr
2.5	Minimum +2 XCorr
3.5	Minimum +3 XCorr
0.08	Minimum DeltCN
1	Minimum charge state
3	Maximum charge state
0.0	Minimum ion proportion
1000	Maximum Sp rank
-1.0	Minimum Sp score
Include	Modified peptide inclusion
Any	Tryptic status requirement
true	Multiple, ambiguous IDs allowed
Ignore	Peptide validation handling
XCorr	Purge duplicate peptides by protein
false	Include only loci with unique peptide
false	Remove subset proteins
Ignore	Locus validation handling
0	Minimum modified peptides per locus
10	Minimum redundancy for low coverage loci
2	Minimum peptides per locus

Locus Key:

Validation Status

Locus

Sequence Count

Spectrum Count

Sequence Coverage

Length

MolWt

Descriptive Name

Similarity Key:

Locus

# of identical peptides

# of differing peptides

ORFP:YJL115W

1394

70.3%

279

31603

4.0

ASF1 SGDID:S0003651, Chr X from 195986-196825

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*2	PARC_3912_02032005-02.03742.03742.1	1.8142	0.0841	631.07	630.806	32	304.4	70.0%	1	V.SLLGIK.V	1 1
*	PARC_3912_02032005-03.04143.04143.1	2.523	0.0881	1367.56	1367.675	3	270.1	50.0%	1	V.SLLGIKVLNNPAK.F	1
*	PARC_3912_02032005-02.04147.04147.1	1.9623	0.1407	755.43	755.892	6	450.4	75.0%	1	K.VLNNPAK.F	1
*	PARC_3912_02032005-01.03620.03620.1	1.9913	0.1151	1263.23	1262.358	2	355.4	61.1%	1	K.FTDPYEFEIT.F	1
*	PARC_3912_02032005-03.04202.04202.2	5.2294	0.3244	2141.77	2141.302	1	1733.1	68.8%	3	K.FTDPYEFEITFECLESL.K	2
*	PARC_3912_02032005-04.00578.00578.2	6.2783	0.4896	2268.09	2269.476	1	2325.6	70.6%	280	K.FTDPYEFEITFECLESLK.H	2
*	PARC_3912_02032005-05.00574.00574.3	5.841	0.4374	2268.14	2269.476	1	1118.9	38.2%	4	K.FTDPYEFEITFECLESLK.H	3
*	PARC_3912_02032005-06.01727.01727.2	3.7223	0.4166	3078.59	3078.368	1	248.2	32.6%	3	K.FTDPYEFEITFECLESLKHDLEWK.L	2
*	PARC_3912_02032005-05.04616.04616.2	3.0325	0.2893	2121.67	2122.299	1	977.4	56.2%	2	F.TDPYEFEITFECLESLK.H	2
*	PARC_3912_02032005-04.00556.00556.2	4.9102	0.3159	2023.21	2021.194	1	1396.0	70.0%	3	T.DPYEFEITFECLESLK.H	2
*	PARC_3912_02032005-05.03802.03802.2	5.7899	0.3999	1905.41	1906.105	1	2008.0	82.1%	12	D.PYEFEITFECLESLK.H	2
*	PARC_3912_02032005-06.01828.01828.2	4.3251	0.4495	2714.01	2714.997	1	2033.0	57.5%	2	D.PYEFEITFECLESLKHDLEWK.L	2
*	PARC_3912_02032005-05.00316.00316.1	3.2799	0.3297	1516.25	1516.697	1	841.2	63.6%	36	E.FEITFECLESLK.H	1
*	PARC_3912_02032005-05.00418.00418.1	2.6926	0.332	1369.45	1369.521	2	294.5	60.0%	40	F.EITFECLESLK.H	1
*	PARC_3912_02032005-05.03987.03987.1	2.8449	0.2194	1239.46	1240.405	1	861.5	72.2%	52	E.ITFECLESLK.H	1
*	PARC_3912_02032005-05.00075.00075.1	2.3948	0.2063	1126.43	1127.246	1	704.0	68.8%	92	I.TFECLESLK.H	1
*	PARC_3912_02032005-04.03658.03658.1	2.093	0.0956	1026.41	1026.141	3	544.8	71.4%	16	T.FECLESLK.H	1
*	PARC_3912_02032005-05.03939.03939.1	1.9819	0.2352	878.41	878.964	1	272.7	83.3%	2	F.ECLESLK.H	1
*	PARC_3912_02032005-07.01694.01694.1	2.2406	0.1449	956.53	956.089	3	539.4	75.0%	3	L.KHDLEWK.L	1
*	PARC_3912_02032005-03.00899.00899.1	1.8424	0.1155	827.58	827.915	3	467.4	80.0%	1	K.HDLEWK.L	1
*	PARC_3912_02032005-04.02660.02660.3	6.5362	0.3183	2331.35	2332.616	1	1147.0	40.5%	16	R.SLDHDQELDSILVGPVPVGVNK.F	3
*	PARC_3912_02032005-02.02648.02648.2	5.694	0.4762	2331.45	2332.616	1	1489.3	61.9%	198	R.SLDHDQELDSILVGPVPVGVNK.F	2
*	PARC_3912_02032005-02.03250.03250.1	2.1883	0.1426	1394.65	1394.654	7	375.4	46.2%	1	L.DSILVGPVPVGVNK.F	1
*	PARC_3912_02032005-03.02082.02082.1	2.6292	0.3713	1278.57	1279.566	1	893.5	66.7%	6	D.SILVGPVPVGVNK.F	1
*	PARC_3912_02032005-03.02930.02930.1	2.853	0.3335	1079.45	1079.328	1	486.1	60.0%	64	I.LVGPVPVGVNK.F	1
*	PARC_3912_02032005-04.02595.02595.1	2.639	0.3491	967.35	966.169	1	399.7	61.1%	119	L.VGPVPVGVNK.F	1
*	PARC_3912_02032005-02.03923.03923.1	2.4263	0.335	867.35	867.036	1	407.4	75.0%	159	V.GPVPVGVNK.F	1
*	PARC_3912_02032005-03.02910.02910.1	2.1605	0.3643	809.5	809.984	1	379.6	78.6%	22	G.PVPVGVNK.F	1
*	PARC_3912_02032005-02.02774.02774.1	1.8686	0.2787	613.3	613.735	1	430.3	80.0%	2	V.PVGVNK.F	1
*	PARC_3912_02032005-02.03803.03803.2	2.9405	0.2107	2276.55	2277.576	2	285.9	33.3%	1	K.FVFSADPPSAELIPASELVSVT.V	2
*	PARC_3912_02032005-06.02482.02482.3	6.2558	0.4285	3541.46	3541.986	1	733.8	24.2%	34	K.FVFSADPPSAELIPASELVSVTVILLSCSYDGR.E	3
*	PARC_3912_02032005-06.02046.02046.2	3.9118	0.4964	3147.19	3148.501	1	705.9	36.2%	5	F.SADPPSAELIPASELVSVTVILLSCSYDGR.E	2
*	PARC_3912_02032005-06.02022.02022.3	4.6654	0.464	3148.01	3148.501	1	1215.2	28.4%	1	F.SADPPSAELIPASELVSVTVILLSCSYDGR.E	3
*	PARC_3912_02032005-06.00075.00075.2	4.9147	0.4628	2990.49	2990.344	1	1733.2	50.0%	4	A.DPPSAELIPASELVSVTVILLSCSYDGR.E	2
*	PARC_3912_02032005-06.02718.02718.2	5.9863	0.5612	2873.95	2875.255	1	1873.2	51.9%	24	D.PPSAELIPASELVSVTVILLSCSYDGR.E	2
*	PARC_3912_02032005-06.00068.00068.2	3.8632	0.3907	2522.11	2522.865	1	789.9	43.2%	2	A.ELIPASELVSVTVILLSCSYDGR.E	2
*	PARC_3912_02032005-05.04867.04867.1	1.8221	0.1029	1587.51	1588.848	9	425.4	39.3%	1	I.PASELVSVTVILLSC.S	1
*	PARC_3912_02032005-07.00198.00198.2	4.2995	0.4812	2167.49	2167.43	1	1623.6	55.3%	3	I.PASELVSVTVILLSCSYDGR.E	2
*	PARC_3912_02032005-06.02212.02212.1	2.5797	0.3405	1571.17	1570.749	2	177.3	46.2%	4	V.SVTVILLSCSYDGR.E	1
*	PARC_3912_02032005-06.02587.02587.1	2.1648	0.1812	1384.77	1384.538	1	199.9	54.5%	1	V.TVILLSCSYDGR.E	1
*	PARC_3912_02032005-02.02275.02275.1	1.8097	0.1429	955.28	955.105	8	296.1	64.3%	1	T.VILLSCSY.D	1
*	PARC_3912_02032005-02.01856.01856.1	1.8516	0.1289	1284.55	1283.433	29	118.6	45.0%	1	T.VILLSCSYDGR.E	1
*	PARC_3912_02032005-02.01666.01666.3	3.6515	0.1183	3798.23	3800.012	1	1077.1	28.3%	1	S.CSYDGREFVRVGYYVNNEYDEEELRENPPAK.V	3
*	PARC_3912_02032005-02.02199.02199.2	5.5198	0.5439	1891.85	1892.973	1	1796.1	78.6%	24	R.VGYYVNNEYDEEELR.E	2
*	PARC_3912_02032005-02.01780.01780.2	4.1434	0.3908	2134.81	2136.193	1	476.2	62.5%	1	R.VGYYVNNEYDEEELREN.P	2
*	PARC_3912_02032005-03.00092.00092.2	4.4725	0.4186	2528.63	2529.679	1	1214.1	55.0%	48	R.VGYYVNNEYDEEELRENPPAK.V	2
*	PARC_3912_02032005-03.00760.00760.3	3.8605	0.2111	2528.81	2529.679	1	930.1	37.5%	6	R.VGYYVNNEYDEEELRENPPAK.V	3
*	PARC_3912_02032005-06.01540.01540.3	3.8969	0.2552	3589.73	3590.888	1	549.6	22.4%	1	R.VGYYVNNEYDEEELRENPPAKVQVDHIVRN.I	3
*	PARC_3912_02032005-01.03276.03276.2	3.1319	0.4097	1793.35	1793.841	1	1195.3	65.4%	1	V.GYYVNNEYDEEELR.E	2
*	PARC_3912_02032005-02.01598.01598.2	4.4063	0.5046	2429.23	2430.546	1	572.8	39.5%	4	V.GYYVNNEYDEEELRENPPAK.V	2
*	PARC_3912_02032005-02.02243.02243.2	3.3693	0.3032	2373.17	2373.494	1	886.1	50.0%	1	G.YYVNNEYDEEELRENPPAK.V	2
*	PARC_3912_02032005-02.01431.01431.2	3.1947	0.3256	1572.71	1573.613	1	521.6	63.6%	1	Y.YVNNEYDEEELR.E	2
*	PARC_3912_02032005-02.02211.02211.2	4.751	0.3968	2209.35	2210.318	1	902.0	55.9%	6	Y.YVNNEYDEEELRENPPAK.V	2
*	PARC_3912_02032005-02.01579.01579.2	4.6939	0.451	2047.71	2047.142	1	665.7	56.2%	6	Y.VNNEYDEEELRENPPAK.V	2
*	PARC_3912_02032005-01.03095.03095.1	2.3308	0.2984	1312.98	1311.304	1	163.3	61.1%	6	V.NNEYDEEELR.E	1
*	PARC_3912_02032005-02.02220.02220.2	4.5232	0.3367	1948.79	1948.01	1	1002.4	63.3%	8	V.NNEYDEEELRENPPAK.V	2
*	PARC_3912_02032005-02.01779.01779.1	2.2074	0.2741	1197.3	1197.2	1	197.8	62.5%	3	N.NEYDEEELR.E	1
*	PARC_3912_02032005-02.01706.01706.2	4.4027	0.4418	1833.71	1833.906	1	1217.7	67.9%	2	N.NEYDEEELRENPPAK.V	2
*	PARC_3912_02032005-03.00874.00874.1	1.9614	0.0944	1183.89	1184.248	95	169.6	50.0%	1	D.EEELRENPPA.K	1
*	PARC_3912_02032005-02.01594.01594.1	2.6101	0.1426	1311.5	1312.422	8	249.8	55.0%	2	D.EEELRENPPAK.V	1
*	PARC_3912_02032005-02.01655.01655.1	1.9548	0.2711	1053.51	1054.191	18	274.1	62.5%	1	E.ELRENPPAK.V	1
*	PARC_3912_02032005-03.00936.00936.2	2.9282	0.2962	966.37	966.128	2	771.8	92.9%	1	K.VQVDHIVR.N	2
*	PARC_3912_02032005-05.01570.01570.1	2.7415	0.1714	940.6	941.118	7	199.7	71.4%	15	R.NILAEKPR.V	1
*	PARC_3912_02032005-03.01123.01123.2	2.5137	0.1756	940.63	941.118	18	758.4	85.7%	1	R.NILAEKPR.V	2
*	PARC_3912_02032005-05.01612.01612.2	2.8649	0.1106	1297.67	1297.544	2	725.4	65.0%	1	R.NILAEKPRVTR.F	2
*	PARC_3912_02032005-03.01103.01103.1	1.8217	0.1355	713.69	713.855	38	235.4	70.0%	1	I.LAEKPR.V	1
*	PARC_3912_02032005-02.02162.02162.3	5.8818	0.4391	3843.44	3844.675	1	1904.0	30.3%	1	K.TEDNETNLEEEEEDIENSDGDEEEGEEEVGSVDK.N	3
*	PARC_3912_02032005-02.01282.01282.2	5.6761	0.5018	1810.09	1810.733	1	2253.8	81.2%	1	N.SDGDEEEGEEEVGSVDK.N	2
*	PARC_3912_02032005-02.01279.01279.2	4.8129	0.48	2582.41	2583.46	1	840.2	50.0%	1	N.SDGDEEEGEEEVGSVDKNEDGNDK.K	2
*	PARC_3912_02032005-02.01270.01270.2	3.2313	0.2731	2381.19	2381.293	1	676.5	40.5%	1	D.GDEEEGEEEVGSVDKNEDGNDK.K	2
*	PARC_3912_02032005-03.00964.00964.2	3.7203	0.3042	1619.41	1618.784	1	1161.7	67.9%	5	R.RKIEGGSTDIESTPK.D	2
*	PARC_3912_02032005-07.01538.01538.2	3.587	0.3769	2030.31	2032.218	1	580.1	47.2%	1	R.RKIEGGSTDIESTPKDAAR.S	2
*	PARC_3912_02032005-02.01286.01286.2	4.8829	0.3695	1462.41	1462.597	1	1724.4	84.6%	2	R.KIEGGSTDIESTPK.D	2
*	PARC_3912_02032005-02.01258.01258.1	2.159	0.117	1333.54	1334.423	11	378.5	45.8%	3	K.IEGGSTDIESTPK.D	1
*	PARC_3912_02032005-02.01328.01328.2	3.3556	0.3116	1747.69	1747.857	4	663.8	46.9%	1	K.IEGGSTDIESTPKDAAR.S	2
*	PARC_3912_02032005-01.02486.02486.1	2.1814	0.2882	1220.43	1221.263	1	246.1	59.1%	10	I.EGGSTDIESTPK.D	1
*	PARC_3912_02032005-01.02502.02502.2	2.6365	0.3114	1221.15	1221.263	1	1083.9	77.3%	1	I.EGGSTDIESTPK.D	2
*	PARC_3912_02032005-02.00144.00144.1	1.8161	0.2079	1093.5	1092.148	161	206.1	45.0%	1	E.GGSTDIESTPK.D	1

Similarities: ORFP:YOL076W(1:77)

ORFP:YPL153C

362

63.9%

821

91962

7.8

RAD53 SGDID:S0006074, Chr XVI from 264191-261726, reverse complement

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	PARC_3912_02032005-01.03027.03027.1	2.533	0.2472	1245.3	1246.322	144	100.9	45.0%	6	Q.PTQQSTQATQR.F	1
*	PARC_3912_02032005-02.01694.01694.2	3.3071	0.3598	1579.97	1580.704	1	841.5	66.7%	1	K.FSQEQIGENIVCR.V	2
*	PARC_3912_02032005-02.01700.01700.1	2.2143	0.2553	1219.17	1218.318	82	99.5	50.0%	1	Q.EQIGENIVCR.V	1
*	PARC_3912_02032005-03.01490.01490.2	3.281	0.4164	1257.55	1258.47	1	1155.7	80.0%	2	R.VICTTGQIPIR.D	2
*	PARC_3912_02032005-03.01534.01534.1	2.606	0.2219	1257.56	1258.47	1	263.8	60.0%	7	R.VICTTGQIPIR.D	1
*	PARC_3912_02032005-05.00690.00690.2	4.6677	0.4159	2427.05	2428.798	1	1772.8	57.1%	1	R.VICTTGQIPIRDLSADISQVLK.E	2
*	PARC_3912_02032005-03.01512.01512.1	1.9642	0.2025	1158.43	1159.337	99	141.5	50.0%	1	V.ICTTGQIPIR.D	1
*	PARC_3912_02032005-03.01482.01482.1	2.4375	0.2492	1045.46	1046.178	1	253.3	75.0%	6	I.CTTGQIPIR.D	1
*	PARC_3912_02032005-03.01474.01474.1	1.8638	0.1029	885.56	886.039	28	136.3	57.1%	1	C.TTGQIPIR.D	1
*	PARC_3912_02032005-02.02998.02998.1	2.7186	0.3005	1188.39	1189.351	1	778.3	65.0%	5	R.DLSADISQVLK.E	1
*	PARC_3912_02032005-02.03002.03002.1	2.1717	0.1428	960.45	961.103	29	352.2	56.2%	2	L.SADISQVLK.E	1
*	PARC_3912_02032005-02.03008.03008.1	2.1903	0.1166	803.36	802.946	14	548.3	75.0%	1	A.DISQVLK.E	1
*	PARC_3912_02032005-05.02015.02015.2	2.6085	0.1109	894.27	894.064	18	459.9	83.3%	1	K.KVWTFGR.N	2
*	PARC_3912_02032005-03.01619.01619.2	4.3952	0.4779	1517.15	1517.607	1	1826.8	79.2%	4	R.NPACDYHLGNISR.L	2
*	PARC_3912_02032005-03.01544.01544.2	3.9946	0.4672	1403.63	1403.503	1	1856.5	86.4%	1	N.PACDYHLGNISR.L	2
*	PARC_3912_02032005-03.01580.01580.1	2.6521	0.4095	1305.5	1306.387	2	300.7	60.0%	4	P.ACDYHLGNISR.L	1
*	PARC_3912_02032005-03.01546.01546.1	2.719	0.2798	1234.44	1235.308	1	258.2	61.1%	3	A.CDYHLGNISR.L	1
*	PARC_3912_02032005-03.01522.01522.1	2.6381	0.3407	1074.49	1075.169	1	364.6	75.0%	2	C.DYHLGNISR.L	1
*	PARC_3912_02032005-03.01511.01511.1	1.8631	0.1505	796.56	796.905	2	299.1	75.0%	1	Y.HLGNISR.L	1
*	PARC_3912_02032005-05.04662.04662.3	6.191	0.3436	3112.73	3112.469	1	1693.1	34.3%	25	K.HFQILLGEDGNLLLNDISTNGTWLNGQK.V	3
*	PARC_3912_02032005-06.01678.01678.2	4.4899	0.3094	3113.43	3112.469	1	1303.1	44.4%	9	K.HFQILLGEDGNLLLNDISTNGTWLNGQK.V	2
*	PARC_3912_02032005-04.01496.01496.2	2.7274	0.1951	1853.95	1851.125	1	475.7	47.2%	1	S.KIASPGLTSSTASSMVANK.T	2
*	PARC_3912_02032005-03.01442.01442.2	5.4655	0.604	1722.25	1722.951	1	1545.5	76.5%	9	K.IASPGLTSSTASSMVANK.T	2
*	PARC_3912_02032005-03.01419.01419.1	1.8406	0.1998	1183.31	1184.307	2	369.7	50.0%	1	L.TSSTASSMVANK.T	1
*	PARC_3912_02032005-05.03902.03902.2	6.3773	0.4569	1898.29	1897.135	1	2878.5	79.4%	23	K.DFSIIDEVVGQGAFATVK.K	2
*	PARC_3912_02032005-05.03696.03696.2	4.5507	0.4992	2023.49	2025.309	1	1627.4	63.9%	4	K.DFSIIDEVVGQGAFATVKK.A	2
*	PARC_3912_02032005-05.03872.03872.1	2.5614	0.418	1433.56	1434.632	1	748.8	61.5%	1	I.IDEVVGQGAFATVK.K	1
*	PARC_3912_02032005-05.03867.03867.1	2.9973	0.4241	1320.43	1321.473	1	569.1	54.2%	7	I.DEVVGQGAFATVK.K	1
*	PARC_3912_02032005-05.03875.03875.1	2.6667	0.3145	1206.46	1206.384	1	283.7	54.5%	2	D.EVVGQGAFATVK.K	1
*	PARC_3912_02032005-04.03484.03484.1	1.9354	0.2194	979.13	978.136	1	363.6	66.7%	1	V.VGQGAFATVK.K	1
*	PARC_3912_02032005-03.01352.01352.1	2.352	0.1775	1189.49	1190.403	1	255.4	60.0%	1	R.KVIGNMDGVTR.E	1
*	PARC_3912_02032005-06.02056.02056.3	6.508	0.5521	4025.24	4025.381	1	1746.9	28.5%	6	K.GFYEDTESYYMVMEFVSGGDLMDFVAAHGAVGEDAGR.E	3
*	PARC_3912_02032005-05.01678.01678.1	2.8996	0.378	1200.57	1201.389	1	441.4	66.7%	26	K.YIHSMGISHR.D	1
*	PARC_3912_02032005-03.02692.02692.2	5.3731	0.3613	2065.45	2065.372	1	1881.9	67.6%	9	R.DLKPDNILIEQDDPVLVK.I	2
*	PARC_3912_02032005-03.02648.02648.1	2.6303	0.1698	1269.35	1269.481	20	447.0	55.0%	1	I.LIEQDDPVLVK.I	1
*	PARC_3912_02032005-04.02746.02746.2	4.4311	0.4278	1697.19	1697.938	1	1824.2	78.6%	9	K.TFCGTLAYVAPEVIR.G	2
*	PARC_3912_02032005-04.02716.02716.1	2.7873	0.2429	1289.76	1289.517	1	269.9	59.1%	1	C.GTLAYVAPEVIR.G	1
*	PARC_3912_02032005-02.01804.01804.1	2.236	0.242	1131.09	1131.36	1	448.7	66.7%	2	T.LAYVAPEVIR.G	1
*	PARC_3912_02032005-04.02734.02734.1	2.3314	0.2528	1017.45	1018.201	1	480.8	75.0%	4	L.AYVAPEVIR.G	1
*	PARC_3912_02032005-02.01291.01291.2	3.4645	0.4689	1612.31	1612.647	1	1192.8	76.9%	1	R.GKDTSVSPDEYEER.N	2
*	PARC_3912_02032005-04.01482.01482.2	4.2306	0.4855	1779.45	1779.947	1	861.1	73.3%	3	L.TGHLPFSGSTQDQLYK.Q	2
*	PARC_3912_02032005-05.00723.00723.1	2.4525	0.4324	1405.67	1406.541	1	490.7	63.6%	3	R.GSYHEGPLKDFR.I	1
*	PARC_3912_02032005-05.00731.00731.2	3.2257	0.3567	1406.03	1406.541	1	654.3	68.2%	1	R.GSYHEGPLKDFR.I	2
*	PARC_3912_02032005-02.03551.03551.2	4.9241	0.3946	1646.33	1646.797	1	1495.8	80.8%	6	R.DFIDSLLQVDPNNR.S	2
*	PARC_3912_02032005-02.03564.03564.1	1.9243	0.1328	1384.45	1384.532	16	194.1	50.0%	1	F.IDSLLQVDPNNR.S	1
*	PARC_3912_02032005-05.01942.01942.1	1.8835	0.137	978.62	979.17	14	310.9	64.3%	1	K.ALNHPWIK.M	1
*	PARC_3912_02032005-05.01724.01724.2	2.9668	0.1671	978.91	979.17	1	740.2	85.7%	2	K.ALNHPWIK.M	2
*	PARC_3912_02032005-02.02932.02932.2	4.6744	0.5047	2704.37	2704.968	1	958.9	45.8%	8	K.MSPLGSQSYGDFSQISLSQSLSQQK.L	2
*	PARC_3912_02032005-04.02692.02692.3	5.896	0.4626	2705.06	2704.968	1	2005.6	39.6%	2	K.MSPLGSQSYGDFSQISLSQSLSQQK.L	3
*	PARC_3912_02032005-02.02615.02615.2	2.9285	0.27	2572.21	2573.776	2	314.8	32.6%	1	M.SPLGSQSYGDFSQISLSQSLSQQK.L	2
*	PARC_3912_02032005-02.02371.02371.2	3.9896	0.4692	2002.87	2004.161	1	1099.8	58.8%	1	Q.SYGDFSQISLSQSLSQQK.L	2
*	PARC_3912_02032005-04.02704.02704.1	2.1051	0.1763	1107.42	1106.221	1	459.6	66.7%	1	I.SLSQSLSQQK.L	1
*	PARC_3912_02032005-04.02696.02696.1	2.1853	0.178	1018.06	1019.143	7	410.1	68.8%	1	S.LSQSLSQQK.L	1
*	PARC_3912_02032005-02.02350.02350.2	4.614	0.4175	1715.55	1715.915	1	1497.6	76.9%	2	K.LLENMDDAQYEFVK.A	2
*	PARC_3912_02032005-02.02354.02354.1	2.1193	0.2181	1359.3	1360.481	1	525.6	65.0%	1	E.NMDDAQYEFVK.A	1
*	PARC_3912_02032005-02.02355.02355.1	2.328	0.2298	1245.4	1246.377	1	563.4	61.1%	1	N.MDDAQYEFVK.A	1
*	PARC_3912_02032005-02.02351.02351.1	2.3798	0.2641	1114.45	1115.185	2	513.6	68.8%	1	M.DDAQYEFVK.A	1
*	PARC_3912_02032005-02.02368.02368.1	1.8075	0.2283	999.27	1000.096	3	593.8	71.4%	1	D.DAQYEFVK.A	1
*	PARC_3912_02032005-03.00858.00858.2	6.0191	0.4969	2317.91	2319.462	1	2665.5	72.2%	6	R.KLQMEQQLQEQDQEDQDGK.I	2
*	PARC_3912_02032005-02.01463.01463.2	6.1642	0.3642	2191.49	2191.288	1	1225.7	58.8%	2	K.LQMEQQLQEQDQEDQDGK.I	2
*	PARC_3912_02032005-02.01236.01236.1	2.0246	0.1325	934.58	934.892	207	302.3	57.1%	1	Q.DQEDQDGK.I	1
*	PARC_3912_02032005-06.01480.01480.1	2.0286	0.3074	874.42	875.062	1	351.5	71.4%	5	K.IPAHAPIR.Y	1
*	PARC_3912_02032005-05.00750.00750.2	2.5003	0.3469	875.03	875.062	1	619.8	85.7%	1	K.IPAHAPIR.Y	2
*	PARC_3912_02032005-03.00984.00984.1	2.9196	0.3127	1268.37	1269.4	1	400.6	55.0%	2	K.LLHSNNTENVK.S	1
*	PARC_3912_02032005-05.03846.03846.2	4.3739	0.3705	2184.11	2185.566	1	1015.4	50.0%	1	R.FLTLKPLPDSIIQESLEIQ.Q	2
*	PARC_3912_02032005-05.04194.04194.3	3.9446	0.2212	2827.46	2828.278	1	723.4	31.2%	1	R.FLTLKPLPDSIIQESLEIQQGVNPF.F	3
*	PARC_3912_02032005-05.04258.04258.2	4.8214	0.3744	2828.81	2828.278	1	960.1	41.7%	5	R.FLTLKPLPDSIIQESLEIQQGVNPF.F	2
*	PARC_3912_02032005-06.01976.01976.3	5.0534	0.3618	3303.62	3301.853	1	881.0	26.8%	4	R.FLTLKPLPDSIIQESLEIQQGVNPFFIGR.S	3
*	PARC_3912_02032005-06.01950.01950.1	2.4272	0.228	1375.58	1376.601	4	421.3	54.5%	1	E.IQQGVNPFFIGR.S	1
*	PARC_3912_02032005-05.02134.02134.1	2.0238	0.2171	950.5	951.122	2	532.1	75.0%	8	R.VHCFIFK.K	1
*	PARC_3912_02032005-05.03280.03280.3	4.9555	0.3888	3408.8	3407.618	1	901.1	31.2%	10	K.SMYESPAQGLDDIWYCHTGTNVSYLNNNR.M	3
*	PARC_3912_02032005-02.01891.01891.1	2.6896	0.1633	1031.51	1031.151	4	696.3	68.8%	2	F.LLQDGDEIK.I	1
*	PARC_3912_02032005-02.01879.01879.1	1.8658	0.1361	917.39	917.991	11	477.6	64.3%	1	L.LQDGDEIK.I	1
*	PARC_3912_02032005-03.02134.02134.1	1.8134	0.1389	710.31	710.894	1	443.0	80.0%	1	K.FVIGFK.V	1
*	PARC_3912_02032005-02.03544.03544.2	5.5805	0.43	2364.17	2365.62	1	2099.2	60.0%	21	K.VEINDTTGLFNEGLGMLQEQR.V	2
*	PARC_3912_02032005-04.03242.03242.1	1.9007	0.2263	1031.52	1032.203	2	251.6	62.5%	1	E.GLGMLQEQR.V	1
*	PARC_3912_02032005-05.00692.00692.1	2.515	0.2975	1177.63	1178.453	1	284.0	61.1%	3	K.KLTQMMAAQR.A	1
*	PARC_3912_02032005-03.01736.01736.1	2.1883	0.1889	1050.39	1050.279	31	176.4	56.2%	1	K.LTQMMAAQR.A	1
*	PARC_3912_02032005-04.03106.03106.3	4.5885	0.3253	3464.06	3464.771	1	631.6	22.7%	16	K.KPPVSDTNNNGNNSVLNDLVESPINANTGNILK.R	3
*	PARC_3912_02032005-06.01580.01580.3	4.7732	0.2195	3622.97	3620.958	1	559.8	22.7%	1	K.KPPVSDTNNNGNNSVLNDLVESPINANTGNILKR.I	3
*	PARC_3912_02032005-02.03402.03402.2	3.5665	0.3194	2339.35	2340.596	1	404.6	35.7%	2	G.NNSVLNDLVESPINANTGNILK.R	2
*	PARC_3912_02032005-04.02990.02990.1	2.1239	0.1369	1370.43	1371.533	17	178.9	45.8%	4	V.ESPINANTGNILK.R	1
*	PARC_3912_02032005-02.03340.03340.1	2.5049	0.228	1241.53	1242.418	163	237.7	45.5%	7	E.SPINANTGNILK.R	1
*	PARC_3912_02032005-02.03339.03339.1	2.3859	0.1898	1155.68	1155.34	24	310.2	55.0%	2	S.PINANTGNILK.R	1
*	PARC_3912_02032005-05.01896.01896.2	5.2382	0.3492	1782.81	1782.994	1	956.3	76.7%	7	K.RIHSVSLSQSQIDPSK.K	2
*	PARC_3912_02032005-03.01554.01554.2	5.207	0.5083	1626.41	1626.807	1	1678.2	82.1%	6	R.IHSVSLSQSQIDPSK.K	2
*	PARC_3912_02032005-05.01575.01575.2	4.6695	0.543	1754.65	1754.981	1	1441.8	80.0%	6	R.IHSVSLSQSQIDPSKK.V	2
*	PARC_3912_02032005-03.01555.01555.1	2.0071	0.2733	1375.47	1376.506	142	224.9	37.5%	2	H.SVSLSQSQIDPSK.K	1
*	PARC_3912_02032005-03.01496.01496.1	1.9452	0.0979	1289.83	1289.428	8	341.6	50.0%	1	S.VSLSQSQIDPSK.K	1
*	PARC_3912_02032005-03.01494.01494.1	2.1939	0.0837	1189.53	1190.296	26	411.8	55.0%	1	V.SLSQSQIDPSK.K	1

gi|7463016|pir||S77957

61.7%

269

27961

6.7

lysyl endopeptidase (EC 3.4.21.50) - Lysobacter enzymogenes

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	PARC_3912_02032005-05.01912.01912.1	2.3846	0.3017	1125.6	1125.331	1	300.8	68.8%	4	K.KMYFLTANH.C	1
*	PARC_3912_02032005-02.01351.01351.2	4.3972	0.3437	2264.27	2262.355	1	1144.5	47.9%	2	R.APGSSSSGANGDGSLAQSQTGAVVR.A	2
*	PARC_3912_02032005-01.02619.02619.2	3.9783	0.3008	2192.25	2191.276	1	618.6	43.5%	1	A.PGSSSSGANGDGSLAQSQTGAVVR.A	2
*	PARC_3912_02032005-03.04023.04023.2	5.6275	0.3913	2543.11	2543.792	1	1073.5	43.5%	3	R.ATNAASDFTLLELNTAANPAYNLF.W	2
*	PARC_3912_02032005-06.00358.00358.3	6.5279	0.569	3314.84	3315.626	1	2070.6	32.8%	10	R.ATNAASDFTLLELNTAANPAYNLFWAGWDR.R	3
*	PARC_3912_02032005-05.04314.04314.2	4.3043	0.3193	2958.63	2958.259	1	682.1	42.0%	1	A.ASDFTLLELNTAANPAYNLFWAGWDR.R	2
*	PARC_3912_02032005-04.03434.03434.2	5.1289	0.4949	2212.39	2210.413	1	1401.0	66.7%	15	L.ELNTAANPAYNLFWAGWDR.R	2
*	PARC_3912_02032005-05.04450.04450.1	2.8558	0.2787	1496.73	1496.668	1	358.5	54.5%	6	N.PAYNLFWAGWDR.R	1
*	PARC_3912_02032005-05.04318.04318.1	2.5473	0.3066	1327.25	1328.472	1	287.2	61.1%	1	A.YNLFWAGWDR.R	1
*	PARC_3912_02032005-05.04323.04323.1	2.0661	0.1909	937.49	938.033	117	143.8	58.3%	2	L.FWAGWDR.R	1
*	PARC_3912_02032005-05.01626.01626.2	3.2977	0.3291	2076.63	2077.267	1	439.0	44.4%	3	R.RDQNFAGATAIHHPNVAEK.R	2
*	PARC_3912_02032005-04.01271.01271.2	5.7237	0.4951	1920.89	1921.079	1	1367.3	61.8%	25	R.DQNFAGATAIHHPNVAEK.R	2
*	PARC_3912_02032005-05.00786.00786.2	2.6978	0.2317	2078.69	2077.267	2	312.7	38.9%	1	R.DQNFAGATAIHHPNVAEKR.I	2
*	PARC_3912_02032005-04.01576.01576.2	3.7945	0.467	1677.73	1677.86	1	1015.4	56.7%	1	Q.NFAGATAIHHPNVAEK.R	2
*	PARC_3912_02032005-05.01616.01616.2	2.8642	0.3823	1561.71	1563.756	1	878.2	67.9%	1	N.FAGATAIHHPNVAEK.R	2
*	PARC_3912_02032005-05.00754.00754.1	2.6885	0.1944	1115.51	1116.265	2	737.5	72.2%	1	T.AIHHPNVAEK.R	1
*	PARC_3912_02032005-02.01654.01654.2	5.1186	0.4786	2222.11	2222.373	1	932.3	64.3%	1	F.WQASGGVTEPGSSGSPIYSPEK.R	2
*	PARC_3912_02032005-02.01432.01432.1	2.097	0.1288	1305.51	1306.415	2	243.5	50.0%	1	E.PGSSGSPIYSPEK.R	1
*	PARC_3912_02032005-05.01567.01567.1	3.005	0.4113	1207.62	1208.363	1	203.2	59.1%	3	K.RVLGQLHGGPSS.C	1
*	PARC_3912_02032005-05.01571.01571.2	3.7017	0.4083	1208.25	1208.363	1	914.4	72.7%	1	K.RVLGQLHGGPSS.C	2
*	PARC_3912_02032005-05.01643.01643.2	4.1194	0.3988	2028.11	2027.17	1	495.9	50.0%	1	K.RVLGQLHGGPSSCSATGADR.S	2
*	PARC_3912_02032005-04.00816.00816.2	4.5065	0.5416	1871.99	1870.983	1	755.5	55.6%	1	R.VLGQLHGGPSSCSATGADR.S	2
*	PARC_3912_02032005-04.01434.01434.2	4.2638	0.3752	1428.57	1428.544	1	1804.7	88.5%	4	R.VFTSWTGGGTSATR.L	2
*	PARC_3912_02032005-03.01647.01647.2	2.8018	0.2853	1183.63	1182.235	1	758.1	72.7%	1	F.TSWTGGGTSATR.L	2
*	PARC_3912_02032005-04.03476.03476.2	5.0384	0.4796	2507.37	2506.685	1	1191.5	45.8%	3	R.LSDWLDAAGTGAQFIDGLDSTGTPP.V	2
*	PARC_3912_02032005-02.03915.03915.2	5.0509	0.4093	2604.73	2605.818	1	1665.5	48.0%	3	R.LSDWLDAAGTGAQFIDGLDSTGTPPV.-	2

ORFP:YML063W

39.6%

255

28812

10.0

RPS1B SGDID:S0004528, Chr XIII from 146482-147249

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
	PARC_3912_02032005-03.02219.02219.2	5.0877	0.5254	2061.15	2062.21	1	1388.8	64.7%	1	R.VVEVCLADLQGSEDHSFR.K	2 2
	PARC_3912_02032005-05.02799.02799.2	5.0991	0.4055	1755.45	1754.955	1	2427.8	85.7%	5	K.NLLTNFHGMDFTTDK.L	2 2
	PARC_3912_02032005-05.02752.02752.1	2.1108	0.3152	1413.5	1414.532	1	467.5	54.5%	1	L.TNFHGMDFTTDK.L	1 1
	PARC_3912_02032005-04.02418.02418.1	1.9715	0.1585	938.52	939.145	72	262.5	64.3%	1	R.IFAIAFTR.K	1 1
	PARC_3912_02032005-05.00740.00740.1	2.5883	0.2585	1185.65	1186.272	1	381.4	72.2%	1	R.HSYAQSSHIR.A	1 1
	PARC_3912_02032005-05.00756.00756.2	2.6243	0.3776	1186.15	1186.272	1	1209.2	94.4%	1	R.HSYAQSSHIR.A	2 2
*	PARC_3912_02032005-04.01227.01227.1	2.2945	0.1588	1058.66	1059.294	12	280.9	62.5%	3	R.KVISEILTR.E	1
	PARC_3912_02032005-04.02475.02475.1	2.1134	0.139	1351.95	1352.579	3	238.7	55.0%	3	K.DIFPLQNIHVR.K	1 1
	PARC_3912_02032005-04.02562.02562.2	3.3392	0.3473	1353.95	1352.579	1	911.9	85.0%	2	K.DIFPLQNIHVR.K	2 2
	PARC_3912_02032005-04.02554.02554.1	2.1353	0.2966	976.52	977.154	1	323.7	64.3%	4	F.PLQNIHVR.K	1 1
	PARC_3912_02032005-04.02502.02502.2	5.2291	0.5005	1847.29	1848.037	1	1768.5	70.6%	4	K.FDVGALMALHGEGSGEEK.G	2 2
*	PARC_3912_02032005-02.02175.02175.1	2.3322	0.248	1323.53	1323.486	18	391.7	50.0%	2	K.VSGFKDEVLETV.-	1

Similarities: ORFP:YLR441C(10:2)

ORFP:YLR441C

36.5%

255

28743

10.0

RPS1A SGDID:S0004433, Chr XII from 1018903-1018136, reverse complement

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
	PARC_3912_02032005-03.02219.02219.2	5.0877	0.5254	2061.15	2062.21	1	1388.8	64.7%	1	R.VVEVCLADLQGSEDHSFR.K	2 2
	PARC_3912_02032005-05.02799.02799.2	5.0991	0.4055	1755.45	1754.955	1	2427.8	85.7%	5	K.NLLTNFHGMDFTTDK.L	2 2
	PARC_3912_02032005-05.02752.02752.1	2.1108	0.3152	1413.5	1414.532	1	467.5	54.5%	1	L.TNFHGMDFTTDK.L	1 1
	PARC_3912_02032005-04.02418.02418.1	1.9715	0.1585	938.52	939.145	72	262.5	64.3%	1	R.IFAIAFTR.K	1 1
	PARC_3912_02032005-05.00740.00740.1	2.5883	0.2585	1185.65	1186.272	1	381.4	72.2%	1	R.HSYAQSSHIR.A	1 1
	PARC_3912_02032005-05.00756.00756.2	2.6243	0.3776	1186.15	1186.272	1	1209.2	94.4%	1	R.HSYAQSSHIR.A	2 2
*	PARC_3912_02032005-02.01578.01578.1	2.031	0.2	1361.65	1362.523	2	233.4	50.0%	1	K.EVQGSTLAQLTSK.L	1
	PARC_3912_02032005-04.02475.02475.1	2.1134	0.139	1351.95	1352.579	3	238.7	55.0%	3	K.DIFPLQNIHVR.K	1 1
	PARC_3912_02032005-04.02562.02562.2	3.3392	0.3473	1353.95	1352.579	1	911.9	85.0%	2	K.DIFPLQNIHVR.K	2 2
	PARC_3912_02032005-04.02554.02554.1	2.1353	0.2966	976.52	977.154	1	323.7	64.3%	4	F.PLQNIHVR.K	1 1
	PARC_3912_02032005-04.02502.02502.2	5.2291	0.5005	1847.29	1848.037	1	1768.5	70.6%	4	K.FDVGALMALHGEGSGEEK.G	2 2

Similarities: ORFP:YML063W(10:1)

ORFP:YLL024C

34.3%

639

69470

5.1

SSA2 SGDID:S0003947, Chr XII from 97484-95565, reverse complement

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	PARC_3912_02032005-02.01400.01400.1	2.1173	0.384	1393.44	1394.499	1	340.0	54.5%	1	R.NFNDPEVQGDMK.H	1
	PARC_3912_02032005-03.02140.02140.2	4.6836	0.5247	1729.93	1730.014	1	1196.4	82.1%	4	K.LIDVDGKPQIQVEFK.G	2 2
	PARC_3912_02032005-02.02236.02236.2	3.0518	0.2944	1896.91	1896.067	4	294.6	43.8%	1	K.VNDAVVTVPAYFNDSQR.Q	2 2 2
	PARC_3912_02032005-03.02186.02186.2	4.6425	0.4937	1788.61	1789.082	1	930.8	65.6%	1	R.IINEPTAAAIAYGLDKK.G	2 2 2 2 3 2
2	PARC_3912_02032005-02.02458.02458.1	2.5911	0.3867	1190.5	1191.37	1	698.5	63.6%	2	E.PTAAAIAYGLDK.K	1 1 1 1 1 1 1 1
	PARC_3912_02032005-02.01362.01362.2	4.1952	0.4981	1675.83	1676.696	1	1343.8	73.3%	1	K.ATAGDTHLGGEDFDNR.L	2 2 2
	PARC_3912_02032005-05.00663.00663.1	2.4382	0.2188	1274.57	1275.493	1	489.8	55.6%	1	R.LVNHFIQEFK.R	1 1
	PARC_3912_02032005-02.02656.02656.1	2.4319	0.3616	1299.49	1300.42	1	772.3	77.8%	1	R.FEELCADLFR.S	1 1 1 1
	PARC_3912_02032005-04.03318.03318.2	6.5088	0.62	2579.83	2578.792	1	1685.2	52.0%	4	R.SINPDEAVAYGAAVQAAILTGDESSK.T	2 2
	PARC_3912_02032005-05.04230.04230.2	6.5456	0.5108	2555.67	2557.018	1	924.8	54.2%	1	K.TQDLLLLDVAPLSLGIETAGGVMTK.L	2 2
	PARC_3912_02032005-04.03360.03360.2	6.2487	0.5263	2584.59	2586.817	1	822.6	47.7%	3	K.SEVFSTYADNQPGVLIQVFEGER.A	2 2
	PARC_3912_02032005-04.03363.03363.2	4.2086	0.4898	2126.23	2124.315	1	580.3	50.0%	1	F.STYADNQPGVLIQVFEGER.A	2 2 2 2
	PARC_3912_02032005-04.03358.03358.1	2.2057	0.2696	1343.47	1344.553	2	289.0	50.0%	1	Q.PGVLIQVFEGER.A	1 1 1 1
	PARC_3912_02032005-02.02258.02258.1	2.2689	0.1395	1267.5	1266.437	1	307.0	60.0%	1	K.NQLESIAYSLK.N	1 1
*	PARC_3912_02032005-06.01635.01635.3	5.1692	0.1997	4226.63	4225.668	1	1807.5	29.2%	1	K.KAEETIAWLDSNTTATKEEFDDQLKELQEVANPIMSK.L	3

Similarities: ORFP:YAL005C(12:3)
ORFP:YBL075C(7:8)
ORFP:YER103W(6:9)
GR78_LYCES(2:13)
GR78_MAIZE(2:13)
ORFP:YEL030W(1:14)
GR78_HUMAN(1:14)

ORFP:YNL209W

34.1%

613

66595

5.5

SSB2 SGDID:S0005153, Chr XIV from 252058-253899

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
	PARC_3912_02032005-02.03272.03272.2	3.306	0.3965	2161.59	2161.414	1	798.9	52.8%	1	K.VIDVDGNPVIEVQYLEETK.T	2 2
	PARC_3912_02032005-02.02356.02356.1	2.7099	0.3242	1081.5	1082.161	1	362.8	68.8%	1	V.PAYFNDAQR.Q	1 1 1 1 1 1
	PARC_3912_02032005-02.02130.02130.1	2.034	0.1736	1187.58	1186.354	25	195.3	54.5%	1	K.DAGAISGLNVLR.I	1 1
	PARC_3912_02032005-03.02726.02726.2	4.2492	0.5078	1731.69	1731.002	1	994.2	67.6%	1	R.IINEPTAAAIAYGLGAGK.S	2 2
	PARC_3912_02032005-02.02640.02640.1	2.5678	0.3607	1260.46	1261.464	1	549.6	57.7%	2	E.PTAAAIAYGLGAGK.S	1 1
	PARC_3912_02032005-07.04008.04008.2	2.5697	0.3104	2963.91	2965.151	1	328.0	25.0%	1	R.TLSSVTQTTVEVDSLFDGEDFESSLTR.A	2 2
	PARC_3912_02032005-02.02487.02487.1	2.2173	0.1634	1169.43	1168.335	1	648.6	66.7%	1	R.FEDLNAALFK.S	1 1
2	PARC_3912_02032005-02.01942.01942.1	2.0083	0.1361	1244.47	1243.443	43	275.5	50.0%	2	K.STLEPVEQVLK.D	1 1 1
*	PARC_3912_02032005-02.02307.02307.2	5.0334	0.4596	2418.33	2419.61	1	1127.0	50.0%	1	R.TFTTVSDNQTTVQFPVYQGER.V	2
	PARC_3912_02032005-02.02900.02900.1	2.3048	0.1732	1278.56	1279.433	3	236.3	60.0%	1	K.ENTLLGEFDLK.N	1 1
	PARC_3912_02032005-05.04459.04459.2	2.8438	0.2514	2669.73	2670.154	1	230.3	33.3%	1	K.NIPMMPAGEPVLEAIFEVDANGILK.V	2 2
	PARC_3912_02032005-03.03472.03472.2	6.2534	0.5449	2166.33	2167.418	1	1517.7	63.2%	2	R.LESYVASIEQTVTDPVLSSK.L	2 2
	PARC_3912_02032005-06.01659.01659.2	3.613	0.4676	2755.13	2756.083	1	688.4	42.0%	1	K.SKIEAALSDALAALQIEDPSADELRK.A	2 2
	PARC_3912_02032005-03.03779.03779.2	6.6221	0.4914	2413.15	2412.656	1	2099.7	54.5%	2	K.IEAALSDALAALQIEDPSADELR.K	2 2
	PARC_3912_02032005-04.03355.03355.2	3.6942	0.3991	2539.27	2540.83	1	500.1	39.1%	1	K.IEAALSDALAALQIEDPSADELRK.A	2 2
	PARC_3912_02032005-04.03391.03391.3	5.4755	0.4432	2542.76	2540.83	1	739.6	35.9%	1	K.IEAALSDALAALQIEDPSADELRK.A	3 3

Similarities: ORFP:YDL229W(15:1)
ORFP:YBL075C(1:15)
GR78_LYCES(1:15)
GR78_PLAFO(1:15)
ORFP:YEL030W(1:15)
GR78_HUMAN(1:15)

ORFP:YDL229W

32.8%

613

66602

5.4

SSB1 SGDID:S0002388, Chr IV from 44066-45907

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	PARC_3912_02032005-02.02292.02292.2	2.8365	0.2583	1479.41	1480.66	1	1024.1	66.7%	1	R.VTPSFVAFTPEER.L	2
	PARC_3912_02032005-02.03272.03272.2	3.306	0.3965	2161.59	2161.414	1	798.9	52.8%	1	K.VIDVDGNPVIEVQYLEETK.T	2 2
	PARC_3912_02032005-02.02356.02356.1	2.7099	0.3242	1081.5	1082.161	1	362.8	68.8%	1	V.PAYFNDAQR.Q	1 1 1 1 1 1
	PARC_3912_02032005-02.02130.02130.1	2.034	0.1736	1187.58	1186.354	25	195.3	54.5%	1	K.DAGAISGLNVLR.I	1 1
	PARC_3912_02032005-03.02726.02726.2	4.2492	0.5078	1731.69	1731.002	1	994.2	67.6%	1	R.IINEPTAAAIAYGLGAGK.S	2 2
	PARC_3912_02032005-02.02640.02640.1	2.5678	0.3607	1260.46	1261.464	1	549.6	57.7%	2	E.PTAAAIAYGLGAGK.S	1 1
	PARC_3912_02032005-07.04008.04008.2	2.5697	0.3104	2963.91	2965.151	1	328.0	25.0%	1	R.TLSSVTQTTVEVDSLFDGEDFESSLTR.A	2 2
	PARC_3912_02032005-02.02487.02487.1	2.2173	0.1634	1169.43	1168.335	1	648.6	66.7%	1	R.FEDLNAALFK.S	1 1
2	PARC_3912_02032005-02.01942.01942.1	2.0083	0.1361	1244.47	1243.443	43	275.5	50.0%	2	K.STLEPVEQVLK.D	1 1 1
	PARC_3912_02032005-02.02900.02900.1	2.3048	0.1732	1278.56	1279.433	3	236.3	60.0%	1	K.ENTLLGEFDLK.N	1 1
	PARC_3912_02032005-05.04459.04459.2	2.8438	0.2514	2669.73	2670.154	1	230.3	33.3%	1	K.NIPMMPAGEPVLEAIFEVDANGILK.V	2 2
	PARC_3912_02032005-03.03472.03472.2	6.2534	0.5449	2166.33	2167.418	1	1517.7	63.2%	2	R.LESYVASIEQTVTDPVLSSK.L	2 2
	PARC_3912_02032005-06.01659.01659.2	3.613	0.4676	2755.13	2756.083	1	688.4	42.0%	1	K.SKIEAALSDALAALQIEDPSADELRK.A	2 2
	PARC_3912_02032005-03.03779.03779.2	6.6221	0.4914	2413.15	2412.656	1	2099.7	54.5%	2	K.IEAALSDALAALQIEDPSADELR.K	2 2
	PARC_3912_02032005-04.03355.03355.2	3.6942	0.3991	2539.27	2540.83	1	500.1	39.1%	1	K.IEAALSDALAALQIEDPSADELRK.A	2 2
	PARC_3912_02032005-04.03391.03391.3	5.4755	0.4432	2542.76	2540.83	1	739.6	35.9%	1	K.IEAALSDALAALQIEDPSADELRK.A	3 3

Similarities: ORFP:YNL209W(15:1)
ORFP:YBL075C(1:15)
GR78_LYCES(1:15)
GR78_PLAFO(1:15)
ORFP:YEL030W(1:15)
GR78_HUMAN(1:15)

NRL_1MCOH

28.3%

428

46852

8.9

owl|| Immunoglobulin g1 (igg1) (mcg) with a hinge deletion, chain H...

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	PARC_3912_02032005-03.01963.01963.1	2.4404	0.2345	1186.49	1187.381	2	502.6	54.5%	1	K.GPSVFPLAPSSK.S	1
*	PARC_3912_02032005-02.01638.01638.1	2.3249	0.2611	1321.54	1322.467	1	479.0	53.8%	1	K.STSGGTAALGCLVK.D	1
*	PARC_3912_02032005-05.04174.04174.3	4.2337	0.2185	3730.13	3728.152	1	742.8	22.1%	1	K.DYFPQPVTVSWNSGALTSGVHTFPAVLQSSGLYSL.S	3
*	PARC_3912_02032005-03.00898.00898.2	3.48	0.1463	2140.07	2139.333	1	864.2	52.8%	1	R.TPEVTCVVVDVSHEDPQVK.F	2
*	PARC_3912_02032005-04.02103.02103.2	3.1745	0.1212	1679.87	1677.859	1	1379.0	76.9%	1	K.FNWYVDGVQVHNAK.T	2
*	PARC_3912_02032005-02.01838.01838.1	2.2514	0.1431	1161.46	1162.338	3	343.6	61.1%	1	K.NQVSLTCLVK.G	1
*	PARC_3912_02032005-02.03062.03062.2	2.8949	0.4569	1873.67	1875.085	1	329.5	62.5%	1	K.TTPPVLDSDGSFFLYSK.L	2

ORFP:YAL005C

27.7%

642

69768

5.1

SSA1 SGDID:S0000004, Chr I from 141433-139505, reverse complement

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
	PARC_3912_02032005-03.02140.02140.2	4.6836	0.5247	1729.93	1730.014	1	1196.4	82.1%	4	K.LIDVDGKPQIQVEFK.G	2 2
	PARC_3912_02032005-02.02236.02236.2	3.0518	0.2944	1896.91	1896.067	4	294.6	43.8%	1	K.VNDAVVTVPAYFNDSQR.Q	2 2 2
	PARC_3912_02032005-03.02186.02186.2	4.6425	0.4937	1788.61	1789.082	1	930.8	65.6%	1	R.IINEPTAAAIAYGLDKK.G	2 2 2 2 3 2
2	PARC_3912_02032005-02.02458.02458.1	2.5911	0.3867	1190.5	1191.37	1	698.5	63.6%	2	E.PTAAAIAYGLDK.K	1 1 1 1 1 1 1 1
	PARC_3912_02032005-02.01362.01362.2	4.1952	0.4981	1675.83	1676.696	1	1343.8	73.3%	1	K.ATAGDTHLGGEDFDNR.L	2 2 2
	PARC_3912_02032005-05.00663.00663.1	2.4382	0.2188	1274.57	1275.493	1	489.8	55.6%	1	R.LVNHFIQEFK.R	1 1
	PARC_3912_02032005-02.02656.02656.1	2.4319	0.3616	1299.49	1300.42	1	772.3	77.8%	1	R.FEELCADLFR.S	1 1 1 1
	PARC_3912_02032005-04.03318.03318.2	6.5088	0.62	2579.83	2578.792	1	1685.2	52.0%	4	R.SINPDEAVAYGAAVQAAILTGDESSK.T	2 2
	PARC_3912_02032005-05.04230.04230.2	6.5456	0.5108	2555.67	2557.018	1	924.8	54.2%	1	K.TQDLLLLDVAPLSLGIETAGGVMTK.L	2 2
	PARC_3912_02032005-04.03363.03363.2	4.2086	0.4898	2126.23	2124.315	1	580.3	50.0%	1	F.STYADNQPGVLIQVFEGER.A	2 2 2 2
	PARC_3912_02032005-04.03358.03358.1	2.2057	0.2696	1343.47	1344.553	2	289.0	50.0%	1	Q.PGVLIQVFEGER.A	1 1 1 1
	PARC_3912_02032005-02.02258.02258.1	2.2689	0.1395	1267.5	1266.437	1	307.0	60.0%	1	K.NQLESIAYSLK.N	1 1
*	PARC_3912_02032005-02.01918.01918.1	3.1683	0.1329	1359.58	1359.581	1	364.0	63.6%	1	K.ELQDIANPIMSK.L	1

Similarities: ORFP:YLL024C(12:1)
ORFP:YBL075C(7:6)
ORFP:YER103W(5:8)
GR78_LYCES(2:11)
GR78_MAIZE(2:11)
ORFP:YEL030W(1:12)
GR78_HUMAN(1:12)

ORFP:YBR263W

26.1%

490

53686

8.7

SHM1 SGDID:S0000467, Chr II from 736219-737691

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	PARC_3912_02032005-04.03063.03063.3	5.96	0.4349	3177.59	3176.566	1	1782.5	33.9%	1	G.LLTSGAQSLVSKPVSEGDPEMFDILQQER.H	3
*	PARC_3912_02032005-04.03063.03063.2	2.6654	0.3031	2118.73	2119.354	1	475.0	38.2%	1	S.KPVSEGDPEMFDILQQER.H	3
*	PARC_3912_02032005-04.01940.01940.2	2.8261	0.27	1574.07	1574.774	1	541.3	61.5%	1	K.HSITLIPSENFTSK.A	2
*	PARC_3912_02032005-02.02286.02286.1	2.7642	0.3169	1189.52	1190.382	2	629.6	60.0%	1	R.ALELYGLDPAK.W	1
*	PARC_3912_02032005-05.03992.03992.2	4.446	0.516	2905.83	2907.317	1	487.8	38.5%	1	K.WGVNVQPLSGAPANLYVYSAIMNVGER.L	2
*	PARC_3912_02032005-04.02424.02424.2	4.5302	0.3674	2437.93	2438.7	1	1138.6	43.5%	1	K.LVSGGTDNHLIVIDLSGTQVDGAR.V	2
*	PARC_3912_02032005-04.03046.03046.2	3.9013	0.3828	1458.11	1457.71	1	1761.9	73.1%	1	R.VETILSALNIAANK.N	2
*	PARC_3912_02032005-03.01974.01974.1	1.8711	0.1059	947.57	948.11	68	180.8	56.2%	1	K.SALFPSGLR.I	1

ORFP:YKL152C

25.9%

247

27609

8.8

GPM1 SGDID:S0001635, Chr XI from 164386-163643, reverse complement

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	PARC_3912_02032005-02.01727.01727.1	2.1051	0.2033	1185.29	1185.362	5	398.7	61.1%	1	K.VYPDVLYTSK.L	1
*	PARC_3912_02032005-02.01486.01486.1	2.6471	0.2545	1171.51	1172.367	84	395.8	50.0%	1	R.AIQTANIALEK.A	1
*	PARC_3912_02032005-06.01690.01690.3	4.6389	0.4998	4455.02	4456.052	1	485.6	20.8%	1	K.LNIPTGIPLVFELDENLKPSKPSYYLDPEAAAAGAAAVANQGK.K	3

U	ORFP:YDL075W	2	2	23.9%	113	12953	10.0	RPL31A SGDID:S0002233, Chr IV from 322225-322281,322703-322987
U	ORFP:YLR406C	2	2	23.9%	113	12967	10.0	RPL31B SGDID:S0004398, Chr XII from 931752-931696,931346-931062, reverse complement

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
	PARC_3912_02032005-03.02235.02235.1	2.2832	0.1661	1283.66	1283.513	6	334.7	50.0%	1	R.LAPELNQAIWK.R	1
	PARC_3912_02032005-04.03312.03312.2	4.8159	0.4958	1734.61	1735.033	1	1961.7	73.3%	1	K.NPLFSYVEPVLVASAK.G	2

ORFP:YGR192C

22.3%

332

35747

7.0

TDH3 SGDID:S0003424, Chr VII from 883812-882814, reverse complement

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	PARC_3912_02032005-04.03266.03266.2	5.7414	0.5177	2404.25	2404.638	1	1296.9	56.8%	2	R.DPANLPWGSSNVDIAIDSTGVFK.E	2
	PARC_3912_02032005-03.01523.01523.2	3.6618	0.484	1820.21	1821.013	1	858.8	53.1%	1	K.IVSNASCTTNCLAPLAK.V	2 2
*	PARC_3912_02032005-06.01766.01766.2	4.0879	0.4616	2575.37	2576.924	1	958.2	41.3%	1	K.VINDAFGIEEGLMTTVHSLTATQK.T	2
	PARC_3912_02032005-03.01416.01416.1	2.3586	0.2416	1110.56	1109.311	1	417.6	61.1%	3	R.VVDLVEHVAK.A	1 1
	PARC_3912_02032005-03.01372.01372.1	1.8401	0.2237	911.58	911.046	93	260.4	57.1%	1	V.DLVEHVAK.A	1 1

Similarities: ORFP:YJR009C(3:2)

KERATIN02

21.7%

622

61987

5.2

no description

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	PARC_3912_02032005-04.02332.02332.2	4.7554	0.6121	2705.63	2706.761	1	1115.7	40.3%	1	R.GGGGSFGYSYGGGSGGGFSASSLGGGFGGGSR.G	2
*	PARC_3912_02032005-05.03598.03598.2	2.6898	0.2834	2432.91	2431.58	1	451.0	27.8%	1	G.YGSGFGGLGGFGGGAGGGDGGILTANEK.S	2
*	PARC_3912_02032005-02.01455.01455.1	2.4332	0.2641	1359.22	1360.42	4	274.9	54.5%	1	Q.ALEEANNDLENK.I	1
*	PARC_3912_02032005-05.03886.03886.2	4.4318	0.4127	2902.97	2904.16	1	750.1	35.4%	1	K.NYSPYYNTIDDLKDQIVDLTVGNNK.T	2
*	PARC_3912_02032005-05.03888.03888.3	4.5594	0.491	2903.66	2904.16	1	524.8	32.3%	1	K.NYSPYYNTIDDLKDQIVDLTVGNNK.T	3
*	PARC_3912_02032005-04.03638.03638.2	4.3224	0.32	2542.57	2539.802	1	792.3	40.5%	1	S.PYYNTIDDLKDQIVDLTVGNNK.T	2
*	PARC_3912_02032005-02.01714.01714.1	2.4127	0.201	1060.46	1061.18	1	377.5	68.8%	1	K.TLLDIDNTR.M	1
*	PARC_3912_02032005-03.03455.03455.3	5.4397	0.3551	3266.3	3266.413	1	1850.9	34.8%	3	K.DIENQYETQITQIEHEVSSSGQEVQSSAK.E	3
*	PARC_3912_02032005-03.03456.03456.2	2.8309	0.209	2375.61	2374.524	3	411.1	35.7%	1	E.TQITQIEHEVSSSGQEVQSSAK.E	2

ORFP:YOL040C

21.1%

142

16002

10.7

RPS15 SGDID:S0005400, Chr XV from 253575-253147, reverse complement

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	PARC_3912_02032005-02.02298.02298.1	2.6664	0.2546	1311.45	1312.521	4	334.7	60.0%	1	K.LLEMSTEDFVK.L	1
*	PARC_3912_02032005-05.04079.04079.2	5.5873	0.5472	2035.19	2035.468	1	1436.0	72.2%	1	R.NMIIVPEMIGSVVGIYNGK.A	2
*	PARC_3912_02032005-05.04084.04084.1	3.1216	0.531	1463.37	1464.72	1	663.1	61.5%	2	V.PEMIGSVVGIYNGK.A	1

ORFP:YLR044C

20.8%

563

61495

6.2

PDC1 SGDID:S0004034, Chr XII from 234082-232391, reverse complement

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	PARC_3912_02032005-05.04012.04012.2	3.5671	0.4506	2290.67	2291.609	1	371.3	42.5%	1	K.QVNVNTVFGLPGDFNLSLLDK.I	2
*	PARC_3912_02032005-04.03374.03374.2	5.7053	0.4982	2523.03	2523.833	1	1293.6	50.0%	2	R.MSANISETTAMITDIATAPAEIDR.C	2
*	PARC_3912_02032005-05.03380.03380.2	4.3418	0.5476	2742.87	2744.207	1	738.0	45.8%	3	R.TTYVTQRPVYLGLPANLVDLNVPAK.L	2
*	PARC_3912_02032005-05.03447.03447.3	3.8491	0.1642	2744.72	2744.207	1	478.1	30.2%	1	R.TTYVTQRPVYLGLPANLVDLNVPAK.L	3
	PARC_3912_02032005-05.03383.03383.1	2.8809	0.3503	1250.55	1251.469	1	561.9	63.6%	1	L.PANLVDLNVPAK.L	1 1
*	PARC_3912_02032005-04.03395.03395.2	4.6124	0.5242	1779.81	1779.147	1	1365.5	73.3%	1	K.LIDLTQFPAFVTPMGK.G	2
	PARC_3912_02032005-03.01624.01624.1	2.0386	0.3276	1092.39	1093.286	1	419.7	66.7%	2	R.NATFPGVQMK.F	1 1
*	PARC_3912_02032005-05.03630.03630.2	4.8061	0.4729	2388.87	2389.673	1	1327.2	60.0%	4	K.AQYNEIQGWDHLSLLPTFGAK.D	2
*	PARC_3912_02032005-05.03655.03655.2	3.2188	0.3256	2190.57	2190.463	1	478.8	41.7%	1	Q.YNEIQGWDHLSLLPTFGAK.D	2

Similarities: ORFP:YLR134W(2:7)

ORFP:YHR174W

20.6%

437

46914

6.0

ENO2 SGDID:S0001217, Chr VIII from 451325-452638

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	PARC_3912_02032005-05.03778.03778.2	4.806	0.5475	1945.51	1946.275	1	1915.8	69.4%	1	K.GVMNAVNNVNNVIAAAFVK.A	2
*	PARC_3912_02032005-05.02636.02636.1	1.9127	0.1801	1414.95	1415.694	9	128.3	39.3%	1	K.LGANAILGVSMAAAR.A	1
*2	PARC_3912_02032005-04.02331.02331.2	2.9185	0.375	1501.59	1498.722	1	521.2	62.5%	1	K.NVPLYQHLADLSK.S	2 2
*2	PARC_3912_02032005-04.02191.02191.2	2.722	0.2547	1285.51	1285.486	1	787.1	65.0%	1	V.PLYQHLADLSK.S	2 2
	PARC_3912_02032005-03.01354.01354.1	2.3335	0.1679	1159.48	1160.315	28	399.2	55.6%	1	R.IGSEVYHNLK.S	1 1
	PARC_3912_02032005-03.00219.00219.3	5.7723	0.4028	3258.86	3259.551	1	1408.4	29.7%	2	R.YGASAGNVGDEGGVAPNIQTAEEALDLIVDAIK.A	3 3

Similarities: ORFP:YGR254W(4:2)

U	ORFP:YBR009C	3	7	18.4%	103	11368	11.4	HHF1 SGDID:S0000213, Chr II from 255641-255330, reverse complement
U	ORFP:YNL030W	3	7	18.4%	103	11368	11.4	HHF2 SGDID:S0004975, Chr XIV from 576723-577034

Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
PARC_3912_02032005-03.01351.01351.1	2.1994	0.182	1325.62	1326.539	20	193.9	50.0%	1	R.DNIQGITKPAIR.R	1
PARC_3912_02032005-03.01383.01383.2	3.4524	0.1871	1326.79	1326.539	2	976.2	72.7%	3	R.DNIQGITKPAIR.R	2
PARC_3912_02032005-02.00070.00070.1	1.9639	0.2468	714.16	714.796	2	330.5	66.7%	3	R.TLYGFGG.-	1

U	ORFP:YBR031W	3	4	17.1%	362	39092	10.6	RPL4A SGDID:S0000235, Chr II from 300125-301213
U	ORFP:YDR012W	3	4	17.1%	362	39062	10.6	RPL4B SGDID:S0002419, Chr IV from 471849-472937

Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
PARC_3912_02032005-07.04136.04136.2	4.4786	0.4665	1821.83	1821.127	1	1370.0	58.3%	1	R.YATASAIAATAVASLVLAR.G	2
PARC_3912_02032005-05.03708.03708.2	2.6045	0.2387	2613.85	2612.992	1	479.9	36.0%	1	R.NVPGVETANVASLNLLQLAPGAHLGR.F	2
PARC_3912_02032005-04.01895.01895.2	4.6785	0.4283	1846.43	1847.078	1	718.7	62.5%	2	K.VGYTLPSHIISTSDVTR.I	2

KERATIN03

17.0%

593

59519

5.2

no description

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	PARC_3912_02032005-04.01844.01844.2	2.7202	0.4492	1708.59	1708.784	1	828.7	50.0%	2	K.GSLGGGFSSGGFSGGSFSR.G	2
*	PARC_3912_02032005-02.01427.01427.1	2.6977	0.2246	1381.39	1382.467	2	852.9	63.6%	1	R.ALEESNYELEGK.I	1
*	PARC_3912_02032005-05.03351.03351.2	6.0475	0.4282	2369.03	2368.652	1	2481.5	62.5%	3	K.NQILNLTTDNANILLQIDNAR.L	2
*	PARC_3912_02032005-02.01888.01888.1	2.588	0.3545	1111.42	1110.168	1	601.1	62.5%	2	K.DAEAWFNEK.S	1
*	PARC_3912_02032005-05.04259.04259.2	4.8599	0.4898	2746.87	2748.075	1	1895.2	56.8%	1	R.YCVQLSQIQAQISALEEQLQQIR.A	2
*	PARC_3912_02032005-02.02360.02360.2	5.0261	0.4168	2083.61	2084.21	1	2080.5	68.8%	1	R.AETECQNTEYQQLLDIK.I	2

KERATIN22

16.4%

645

65865

8.0

no description

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	PARC_3912_02032005-04.02354.02354.2	4.9183	0.3951	2400.47	2400.445	1	2708.3	55.2%	1	G.GSGFGGGSGFGGGSGFSGGGFGGGGFGGGR.F	2
*	PARC_3912_02032005-06.01654.01654.3	5.6198	0.4551	4094.3	4094.578	1	872.9	23.8%	1	R.FGGFGGPGGVGGLGGPGGFGPGGYPGGIHEVSVNQSLLQPLNVK.V	3
2	PARC_3912_02032005-02.02502.02502.1	2.043	0.1159	1069.28	1070.233	1	313.0	75.0%	1	N.NKFASFIDK.V	1 1 1 1 1 1 1 1
*	PARC_3912_02032005-02.01643.01643.1	2.0463	0.1882	1208.47	1209.342	43	264.9	50.0%	1	R.TAAENDFVTLK.K	1
	PARC_3912_02032005-03.03544.03544.1	3.1258	0.2322	1330.5	1330.521	1	501.4	63.6%	2	R.NLDLDSIIAEVK.A	1 1 1 1

Similarities: KERATIN13(1:4)
KERATIN20(1:4)
KERATIN17(2:3)
KERATIN21(1:4)
KERATIN18(2:3)
KERATIN14(1:4)
KERATIN16(1:4)
KERATIN15(1:4)

U	ORFP:YHR203C	2	4	16.1%	261	29410	10.1	RPS4B SGDID:S0001246, Chr VIII from 505526-505513,505243-504472, reverse complement
U	ORFP:YJR145C	2	4	16.1%	261	29410	10.1	RPS4A SGDID:S0003906, Chr X from 702763-702750,702493-701722, reverse complement

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
	PARC_3912_02032005-04.03386.03386.2	3.9105	0.4031	2591.83	2593.824	1	753.4	43.2%	1	R.TDTTYPAGFMDVITLDATNENFR.L	2
	PARC_3912_02032005-05.02675.02675.2	5.3871	0.4316	2117.79	2117.496	1	1026.0	55.6%	3	R.LNNVFVIGEQGKPYISLPK.G	2

U	ORFP:YHL033C	3	3	14.8%	256	28125	10.0	RPL8A SGDID:S0001025, Chr VIII from 36023-35253, reverse complement
U	ORFP:YLL045C	3	3	14.8%	256	28112	10.0	RPL8B SGDID:S0003968, Chr XII from 48628-47858, reverse complement

Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
PARC_3912_02032005-03.01586.01586.1	2.3806	0.0958	1158.32	1159.33	34	428.3	60.0%	1	K.NFGIGQAVQPK.R	1
PARC_3912_02032005-03.02008.02008.2	2.5038	0.1231	1929.73	1929.134	1	419.6	43.8%	1	K.LVSTIDANFADKYDEVK.K	2
PARC_3912_02032005-05.01920.01920.1	2.3434	0.1914	1038.43	1039.182	7	418.6	61.1%	1	K.HWGGGILGNK.A	1

ORFP:YCR012W

14.4%

416

44738

7.6

PGK1 SGDID:S0000605, Chr III from 137740-138990

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	PARC_3912_02032005-03.01862.01862.1	1.8481	0.1832	925.49	926.188	1	547.1	68.8%	1	R.IVAALPTIK.Y	1
*	PARC_3912_02032005-04.01656.01656.2	2.8472	0.241	1445.49	1445.636	1	890.7	62.5%	1	R.AHSSMVGFDLPQR.A	2
*	PARC_3912_02032005-05.04392.04392.2	5.4548	0.5628	2391.71	2392.711	1	1039.5	59.1%	1	K.GVEVVLPVDFIIADAFSADANTK.T	2
*	PARC_3912_02032005-04.03088.03088.2	4.1165	0.5136	1720.19	1720.965	1	848.5	64.3%	1	K.TIVWNGPPGVFEFEK.F	2

ORFP:YBL075C

13.9%

649

70547

5.2

SSA3 SGDID:S0000171, Chr II from 86443-84494, reverse complement

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
	PARC_3912_02032005-02.02236.02236.2	3.0518	0.2944	1896.91	1896.067	4	294.6	43.8%	1	T.VNDAVVTVPAYFNDSQR.Q	2 2 2
	PARC_3912_02032005-03.02186.02186.2	4.6425	0.4937	1788.61	1789.082	1	930.8	65.6%	1	R.IINEPTAAAIAYGLDKK.G	2 2 2 2 3 2
2	PARC_3912_02032005-02.02458.02458.1	2.5911	0.3867	1190.5	1191.37	1	698.5	63.6%	2	E.PTAAAIAYGLDK.K	1 1 1 1 1 1 1 1
	PARC_3912_02032005-02.01362.01362.2	4.1952	0.4981	1675.83	1676.696	1	1343.8	73.3%	1	K.ATAGDTHLGGEDFDNR.L	2 2 2
	PARC_3912_02032005-02.02656.02656.1	2.4319	0.3616	1299.49	1300.42	1	772.3	77.8%	1	R.FEELCADLFR.S	1 1 1 1
*2	PARC_3912_02032005-02.01942.01942.1	2.0083	0.1361	1244.47	1243.486	43	275.5	50.0%	2	R.STLEPVEKVLK.D	1 1 1
	PARC_3912_02032005-04.03363.03363.2	4.2086	0.4898	2126.23	2124.315	1	580.3	50.0%	1	F.STYADNQPGVLIQVFEGER.T	2 2 2 2
	PARC_3912_02032005-04.03358.03358.1	2.2057	0.2696	1343.47	1344.553	2	289.0	50.0%	1	Q.PGVLIQVFEGER.T	1 1 1 1

Similarities: ORFP:YLL024C(7:1)
ORFP:YNL209W(1:7)
ORFP:YDL229W(1:7)
ORFP:YAL005C(7:1)
ORFP:YER103W(5:3)
GR78_LYCES(2:6)
GR78_MAIZE(2:6)
ORFP:YEL030W(1:7)
GR78_HUMAN(1:7)

ORFP:YNL064C

13.4%

409

44671

6.3

YDJ1 SGDID:S0005008, Chr XIV from 507093-505864, reverse complement

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	PARC_3912_02032005-06.01786.01786.3	5.7033	0.5201	4461.41	4461.723	1	921.1	23.9%	1	R.DIYDQFGEDGLSGAGGAGGFPGGGFGFGDDIFSQFFGAGGAQRPR.G	3
*	PARC_3912_02032005-03.02240.02240.1	2.215	0.2391	1027.49	1027.227	3	361.5	61.1%	1	V.PGEVIAPGMR.K	1

ORFP:YGR254W

12.8%

437

46816

6.6

ENO1 SGDID:S0003486, Chr VII from 1000930-1002243

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*2	PARC_3912_02032005-04.02331.02331.2	2.9185	0.375	1501.59	1498.765	1	521.2	62.5%	1	K.NVPLYKHLADLSK.S	2 2
*2	PARC_3912_02032005-04.02191.02191.2	2.722	0.2547	1285.51	1285.529	1	787.1	65.0%	1	V.PLYKHLADLSK.S	2 2
	PARC_3912_02032005-03.01354.01354.1	2.3335	0.1679	1159.48	1160.315	28	399.2	55.6%	1	R.IGSEVYHNLK.S	1 1
	PARC_3912_02032005-03.00219.00219.3	5.7723	0.4028	3258.86	3259.551	1	1408.4	29.7%	2	R.YGASAGNVGDEGGVAPNIQTAEEALDLIVDAIK.A	3 3

Similarities: ORFP:YHR174W(4:0)

U	ORFP:YGR085C	2	2	12.6%	174	19750	9.9	RPL11B SGDID:S0003317, Chr VII from 648908-648384, reverse complement
U	ORFP:YPR102C	2	2	12.6%	174	19720	9.9	RPL11A SGDID:S0006306, Chr XVI from 731744-731220, reverse complement

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
	PARC_3912_02032005-02.01438.01438.2	4.7136	0.4411	1513.31	1514.719	1	1542.8	76.9%	1	K.VLEQLSGQTPVQSK.A	2
	PARC_3912_02032005-02.02046.02046.1	2.2782	0.2179	1011.47	1012.107	2	391.5	78.6%	1	K.EDTVSWFK.Q	1

KERATIN13

11.2%

643

65494

6.6

no description

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	PARC_3912_02032005-03.02522.02522.1	2.8409	0.2076	1383.36	1384.532	61	300.7	45.5%	2	K.SLNNQFASFIDK.V	1
*2	PARC_3912_02032005-02.02502.02502.1	2.043	0.1159	1069.28	1070.19	1	313.0	75.0%	1	N.NQFASFIDK.V	1 1 1 1 1 1 1 1
*	PARC_3912_02032005-02.01564.01564.1	2.6928	0.2916	1179.56	1180.303	1	606.5	72.2%	2	K.YEELQITAGR.H	1
*	PARC_3912_02032005-03.01602.01602.2	2.8672	0.3277	1847.83	1846.007	1	355.5	53.3%	1	K.KQISNLQQSISDAEQR.G	2
*	PARC_3912_02032005-03.02223.02223.2	3.3987	0.2545	1601.83	1600.769	1	1209.2	69.2%	1	K.NKLNDLEDALQQAK.E	2
*	PARC_3912_02032005-02.01970.01970.1	2.8878	0.3369	1357.46	1358.491	1	967.3	68.2%	2	K.LNDLEDALQQAK.E	1
*	PARC_3912_02032005-02.01980.01980.1	2.5297	0.2544	1130.33	1131.228	1	606.2	66.7%	1	N.DLEDALQQAK.E	1
*	PARC_3912_02032005-02.01536.01536.1	2.6046	0.2654	1141.39	1142.269	3	449.9	68.8%	1	R.DYQELMNTK.L	1
*2	PARC_3912_02032005-04.02679.02679.1	1.9611	0.1622	1278.56	1278.491	2	375.3	65.0%	2	K.LALDLEIATYR.T	1 1 1

Similarities: KERATIN22(1:8)
KERATIN20(2:7)
KERATIN17(1:8)
KERATIN18(1:8)
KERATIN14(1:8)
KERATIN16(2:7)
KERATIN15(1:8)

ORFP:YNL265C

10.1%

298

34496

6.0

IST1 SGDID:S0005209, Chr XIV from 145280-145254,145148-144279, reverse complement

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	PARC_3912_02032005-02.02210.02210.3	3.6908	0.1761	3643.4	3641.377	26	219.2	19.8%	1	N.ELKIPKDIKKEVIEKKQSEKKTTKRKTKKE.Q	3
*	PARC_3912_02032005-03.02204.02204.2	2.6504	0.0843	1677.85	1676.951	118	175.1	42.3%	1	K.EVIEKKQSEKKTTK.R	2

KERATIN20

8.7%

483

53748

5.4

no description

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
2	PARC_3912_02032005-02.02502.02502.1	2.043	0.1159	1069.28	1070.233	1	313.0	75.0%	1	N.NKFASFIDK.V	1 1 1 1 1 1 1 1
*	PARC_3912_02032005-02.03106.03106.2	2.8366	0.1136	1607.53	1606.776	1	366.6	68.2%	1	L.RQLYEEEIRELQ.S	2
*	PARC_3912_02032005-04.01491.01491.1	2.0508	0.1004	1182.47	1184.281	21	153.1	55.6%	1	S.MDNSRSLDMD.S	1
2	PARC_3912_02032005-04.02679.02679.1	1.9611	0.1622	1278.56	1278.491	2	375.3	65.0%	2	K.LALDIEIATYR.K	1 1 1

Similarities: KERATIN22(1:3)
KERATIN13(2:2)
KERATIN17(1:3)
KERATIN18(1:3)
KERATIN14(1:3)
KERATIN16(2:2)
KERATIN15(1:3)

ORFP:YGR155W

8.5%

507

56022

6.7

CYS4 SGDID:S0003387, Chr VII from 798545-800068

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	PARC_3912_02032005-05.03626.03626.2	4.3419	0.5275	2127.11	2127.486	1	505.4	42.9%	1	R.STLIEPTSGNTGIGLALIGAIK.G	2
*	PARC_3912_02032005-02.03446.03446.2	4.3293	0.2714	2227.89	2225.55	1	944.4	50.0%	1	K.IQIVGADPFGSILAQPENLNK.T	2

U	ORFP:YDR502C	2	2	8.3%	384	42256	5.4	SAM2 SGDID:S0002910, Chr IV from 1454452-1453298, reverse complement
U	ORFP:YLR180W	2	2	8.4%	382	41818	5.2	SAM1 SGDID:S0004170, Chr XII from 515264-516412

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
	PARC_3912_02032005-03.01842.01842.1	1.8745	0.1359	1085.5	1086.15	130	166.4	45.5%	1	I.GGPQGDAGLTGR.K	1
	PARC_3912_02032005-03.02003.02003.2	4.5965	0.5972	1814.37	1814.005	1	1511.0	68.4%	1	K.IIVDAYGGASSVGGGAFSGK.D	2

ORFP:YAL038W

8.2%

500

54545

7.7

CDC19 SGDID:S0000036, Chr I from 71788-73290

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
	PARC_3912_02032005-03.01727.01727.1	2.1519	0.1059	988.57	987.185	3	525.0	61.1%	2	R.TSIIGTIGPK.T	1
*	PARC_3912_02032005-02.03112.03112.1	1.916	0.1817	1053.39	1052.259	80	271.0	50.0%	1	I.PAPEVLAVQK.K	1
*	PARC_3912_02032005-05.02252.02252.2	2.6684	0.2401	1504.95	1502.766	1	525.3	63.6%	1	K.YRPNCPIILVTR.C	2
*	PARC_3912_02032005-04.03160.03160.1	2.0324	0.2541	1071.24	1070.276	11	361.3	56.2%	1	R.GVFPFVFEK.E	1

U	ORFP:YHR054C	2	2	8.2%	354	41061	6.8	YHR054C SGDID:S0001096, Chr VIII from 214249-213185, reverse complement
U	ORFP:YHR056C	2	2	3.5%	832	95520	7.1	RSC30 SGDID:S0001098, Chr VIII from 217681-215183, reverse complement

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
	PARC_3912_02032005-05.02731.02731.2	2.7191	0.146	2228.03	2227.608	5	216.2	33.3%	1	F.YSITFNFIFPIKSIKSFSS.G	2
	PARC_3912_02032005-03.00832.00832.1	2.2177	0.0943	1183.29	1184.418	105	135.7	50.0%	1	N.EEINVQLLLI.H	1

U	ORFP:YBR118W	2	2	8.1%	458	50033	9.0	TEF2 SGDID:S0000322, Chr II from 477626-479002
U	ORFP:YPR080W	2	2	8.1%	458	50033	9.0	TEF1 SGDID:S0006284, Chr XVI from 700590-701966

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
	PARC_3912_02032005-05.03870.03870.2	3.2555	0.4729	2908.25	2910.273	1	483.0	40.0%	1	K.TVPFVPISGWNGDNMIEATTNAPWYK.G	2
	PARC_3912_02032005-03.01564.01564.1	1.9237	0.287	1027.59	1026.224	2	200.3	55.0%	1	K.IGGIGTVPVGR.V	1

ORFP:YJR009C

8.1%

332

35847

7.0

TDH2 SGDID:S0003769, Chr X from 454374-453376, reverse complement

Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
PARC_3912_02032005-03.01523.01523.2	3.6618	0.484	1820.21	1821.013	1	858.8	53.1%	1	K.IVSNASCTTNCLAPLAK.V	2 2
PARC_3912_02032005-03.01416.01416.1	2.3586	0.2416	1110.56	1109.311	1	417.6	61.1%	3	R.VVDLVEHVAK.A	1 1
PARC_3912_02032005-03.01372.01372.1	1.8401	0.2237	911.58	911.046	93	260.4	57.1%	1	V.DLVEHVAK.A	1 1

Similarities: ORFP:YGR192C(3:0)

ORFP:YER103W

7.8%

642

69651

5.1

SSA4 SGDID:S0000905, Chr V from 364585-366513

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
	PARC_3912_02032005-03.02186.02186.2	4.6425	0.4937	1788.61	1789.082	1	930.8	65.6%	1	R.IINEPTAAAIAYGLDKK.S	2 2 2 2 3 2
2	PARC_3912_02032005-02.02458.02458.1	2.5911	0.3867	1190.5	1191.37	1	698.5	63.6%	2	E.PTAAAIAYGLDK.K	1 1 1 1 1 1 1 1
	PARC_3912_02032005-02.02656.02656.1	2.4319	0.3616	1299.49	1300.42	1	772.3	77.8%	1	R.FEELCADLFR.S	1 1 1 1
	PARC_3912_02032005-04.03360.03360.2	6.2487	0.5263	2584.59	2586.817	1	822.6	47.7%	3	K.SEVFSTYADNQPGVLIQVFEGER.T	2 2
	PARC_3912_02032005-04.03363.03363.2	4.2086	0.4898	2126.23	2124.315	1	580.3	50.0%	1	F.STYADNQPGVLIQVFEGER.T	2 2 2 2
	PARC_3912_02032005-04.03358.03358.1	2.2057	0.2696	1343.47	1344.553	2	289.0	50.0%	1	Q.PGVLIQVFEGER.T	1 1 1 1

Similarities: ORFP:YLL024C(6:0)
ORFP:YAL005C(5:1)
ORFP:YBL075C(5:1)
GR78_LYCES(2:4)
GR78_MAIZE(2:4)
ORFP:YEL030W(1:5)
GR78_HUMAN(1:5)

KERATIN17

7.6%

590

62461

8.1

no description

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
2	PARC_3912_02032005-02.02502.02502.1	2.043	0.1159	1069.28	1070.233	1	313.0	75.0%	1	N.NKFASFIDK.V	1 1 1 1 1 1 1 1
	PARC_3912_02032005-04.03410.03410.2	4.3885	0.4268	1892.59	1892.122	1	1009.7	75.0%	1	R.QNLEPLFEQYINNLR.R	2 2 2
	PARC_3912_02032005-03.03544.03544.1	3.1258	0.2322	1330.5	1330.521	1	501.4	63.6%	2	R.NLDLDSIIAEVK.A	1 1 1 1
*	PARC_3912_02032005-03.02168.02168.1	1.8443	0.1051	719.45	720.757	30	210.9	56.2%	1	S.SSSGGVGLG.G	1

Similarities: KERATIN22(2:2)
KERATIN13(1:3)
KERATIN20(1:3)
KERATIN21(2:2)
KERATIN18(3:1)
KERATIN14(1:3)
KERATIN16(1:3)
KERATIN15(1:3)

KERATIN21

7.6%

357

39219

5.2

no description

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
	PARC_3912_02032005-04.03410.03410.2	4.3885	0.4268	1892.59	1892.122	1	1009.7	75.0%	1	-.QNLEPLFEQYINNLR.R	2 2 2
	PARC_3912_02032005-03.03544.03544.1	3.1258	0.2322	1330.5	1330.521	1	501.4	63.6%	2	R.NLDLDSIIAEVK.A	1 1 1 1

Similarities: KERATIN22(1:1)
KERATIN17(2:0)
KERATIN18(2:0)

ORFP:YOR040W

7.4%

285

32339

7.5

GLO4 SGDID:S0005566, Chr XV from 407063-407920

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	PARC_3912_02032005-03.03196.03196.1	2.0666	0.084	1236.39	1236.564	73	253.0	55.6%	1	Q.IRNMHVKPIK.M	1
*	PARC_3912_02032005-03.00572.00572.1	1.9372	0.1472	1345.66	1346.538	177	110.6	45.0%	1	Q.YHLGNLRVTCI.R	1

TFE2_HUMAN

7.2%

654

67600

6.5

owl|P15923| TRANSCRIPTION FACTOR E2-ALPHA (IMMUNOGLOBULIN ENHANCER BINDING...

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	PARC_3912_02032005-02.02619.02619.1	1.814	0.1017	1101.23	1102.195	64	264.2	50.0%	1	L.AGTSQWPRAGA.P	1
*	PARC_3912_02032005-04.03258.03258.3	3.5624	0.1714	3489.56	3490.896	32	214.6	17.9%	1	T.GPMSLGGRHAGLVGGSHPEDGLAGSTSLMHNHAALP.S	3

ORFP:YOL115W

6.7%

584

66031

5.5

TRF4 SGDID:S0005475, Chr XV from 101474-103228

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	PARC_3912_02032005-02.01406.01406.3	3.8412	0.1256	3478.52	3476.819	2	835.1	24.1%	1	Q.AEQEEEREKQELEIKKEKQKEILNTDYP.W	3
*	PARC_3912_02032005-04.00392.00392.1	2.2285	0.1	1243.66	1245.239	1	702.0	75.0%	1	E.TYITVSSEDDD.E	1

ORFP:YAL012W

6.6%

394

42542

6.5

CYS3 SGDID:S0000010, Chr I from 130802-131986

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	PARC_3912_02032005-04.01671.01671.1	2.0595	0.0981	1106.67	1106.264	1	320.9	72.2%	1	E.FLAADKENVV.A	1
*	PARC_3912_02032005-03.03428.03428.2	2.9767	0.3439	1776.25	1775.948	1	746.8	53.3%	1	R.ISVGIEDTDDLLEDIK.Q	2

ORFP:YOL086C

6.6%

348

36849

6.7

ADH1 SGDID:S0005446, Chr XV from 160593-159547, reverse complement

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
	PARC_3912_02032005-03.01870.01870.1	2.4994	0.2569	1251.65	1252.413	2	201.2	54.5%	1	K.SISIVGSYVGNR.A	1
*	PARC_3912_02032005-02.02524.02524.1	2.384	0.3324	1251.4	1250.434	9	257.7	50.0%	1	V.GLSTLPEIYEK.M	1

KERATIN18

6.4%

562

59822

8.0

no description

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
2	PARC_3912_02032005-02.02502.02502.1	2.043	0.1159	1069.28	1070.233	1	313.0	75.0%	1	N.NKFASFIDK.V	1 1 1 1 1 1 1 1
	PARC_3912_02032005-04.03410.03410.2	4.3885	0.4268	1892.59	1892.122	1	1009.7	75.0%	1	R.QNLEPLFEQYINNLR.R	2 2 2
	PARC_3912_02032005-03.03544.03544.1	3.1258	0.2322	1330.5	1330.521	1	501.4	63.6%	2	R.NLDLDSIIAEVK.A	1 1 1 1

Similarities: KERATIN22(2:1)
KERATIN13(1:2)
KERATIN20(1:2)
KERATIN17(3:0)
KERATIN21(2:1)
KERATIN14(1:2)
KERATIN16(1:2)
KERATIN15(1:2)

ORFP:YMR191W

6.4%

373

42163

9.5

YMR191W SGDID:S0004803, Chr XIII from 645655-646776

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	PARC_3912_02032005-05.03150.03150.3	3.8412	0.0813	2730.92	2733.021	2	649.9	26.1%	1	Y.YMEKPGSYIEFTISEFNVNGTFSA.P	3
*	PARC_3912_02032005-06.01606.01606.2	3.0191	0.215	2732.63	2733.021	1	786.6	39.1%	1	Y.YMEKPGSYIEFTISEFNVNGTFSA.P	2

ORFP:YLR259C

5.4%

572

60752

5.3

HSP60 SGDID:S0004249, Chr XII from 665002-663284, reverse complement

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	PARC_3912_02032005-03.02172.02172.1	2.6208	0.2216	1339.61	1339.577	12	307.8	54.5%	1	R.NVLIEQPFGPPK.I	1
*	PARC_3912_02032005-05.03582.03582.2	3.0585	0.2994	2114.23	2113.419	1	480.0	41.7%	1	K.KISSIQDILPALEISNQSR.R	2

ORFP:YOR063W

5.4%

387

43758

10.3

RPL3 SGDID:S0005589, Chr XV from 444687-445850

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	PARC_3912_02032005-05.02864.02864.1	2.1988	0.3226	1411.52	1411.684	1	464.9	54.2%	1	R.SKPVALTSFLGYK.A	1
*	PARC_3912_02032005-04.01524.01524.1	2.0235	0.1689	905.53	905.103	142	213.2	57.1%	1	K.HAFMGTLK.K	1

GR78_LYCES

5.3%

666

73235

5.2

owl|P49118| 78 KD GLUCOSE REGULATED PROTEIN HOMOLOG PRECURSOR (GRP 78) (IMMUNOGLOBULIN...

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
	PARC_3912_02032005-02.02356.02356.1	2.7099	0.3242	1081.5	1082.161	1	362.8	68.8%	1	V.PAYFNDAQR.Q	1 1 1 1 1 1
*	PARC_3912_02032005-03.02186.02186.3	3.5675	0.1211	2682.41	2683.167	1	520.1	27.0%	1	G.VIAGLNVARIINEPTAAAIAYGLDKK.G	2 2 2 2 3 2
	PARC_3912_02032005-03.02186.02186.2	4.6425	0.4937	1788.61	1789.082	1	930.8	65.6%	1	R.IINEPTAAAIAYGLDKK.G	2 2 2 2 3 2
2	PARC_3912_02032005-02.02458.02458.1	2.5911	0.3867	1190.5	1191.37	1	698.5	63.6%	2	E.PTAAAIAYGLDK.K	1 1 1 1 1 1 1 1

Similarities: ORFP:YLL024C(2:2)
ORFP:YNL209W(1:3)
ORFP:YDL229W(1:3)
ORFP:YAL005C(2:2)
ORFP:YBL075C(2:2)
ORFP:YER103W(2:2)
GR78_PLAFO(1:3)
GR78_MAIZE(2:2)
ORFP:YEL030W(2:2)
GR78_HUMAN(2:2)

I50731

5.2%

577

63529

5.7

owl|I50731| immunoglobulin heavy chain - nurse shark

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	PARC_3912_02032005-04.01582.01582.1	1.8083	0.1361	1134.42	1137.296	17	111.2	55.6%	1	S.MNNYAPAIKD.R	1
*	PARC_3912_02032005-02.01332.01332.2	3.2707	0.1094	2267.29	2266.339	1	612.4	44.7%	1	V.NPSNYKNTEVTAESDNTSFF.L	2

ORFP:YCR011C

4.9%

1049

117231

5.2

ADP1 SGDID:S0000604, Chr III from 136867-133718, reverse complement

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	PARC_3912_02032005-04.03595.03595.2	2.8553	0.2148	2287.85	2286.758	5	355.5	32.5%	2	I.IFEDLNNSIILSVLVLLGSLL.F	2
*	PARC_3912_02032005-05.03894.03894.3	3.7956	0.1738	3404.3	3407.18	3	372.8	20.7%	1	S.TFGFVVQNLVFDIKILALFNVVFLIMGYLA.L	3

KERATIN14

4.9%

638

65871

8.1

no description

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	PARC_3912_02032005-05.01796.01796.2	3.0866	0.0838	1782.65	1784.928	32	249.4	40.5%	1	G.FGGAGGFGGAGGFGGPGVFGGP.G	2
2	PARC_3912_02032005-02.02502.02502.1	2.043	0.1159	1069.28	1070.233	1	313.0	75.0%	1	N.NKFASFIDK.V	1 1 1 1 1 1 1 1

Similarities: KERATIN22(1:1)
KERATIN13(1:1)
KERATIN20(1:1)
KERATIN17(1:1)
KERATIN18(1:1)
KERATIN16(1:1)
KERATIN15(1:1)

ORFP:YOR354C

4.6%

692

79947

8.1

MSC6 SGDID:S0005881, Chr XV from 1003218-1001140, reverse complement

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	PARC_3912_02032005-02.03424.03424.2	2.8968	0.0883	2390.15	2391.744	1	902.3	52.6%	1	L.YGQYNKLEGEKNVEIISKFM.D	2
*	PARC_3912_02032005-03.02002.02002.2	2.6021	0.0985	1296.41	1297.583	1	870.9	68.2%	1	R.ILAVWNSVIKPG.D	2

ORFP:YNL258C

4.2%

754

88072

5.0

DSL1 SGDID:S0005202, Chr XIV from 160372-158108, reverse complement

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	PARC_3912_02032005-02.02411.02411.1	1.9882	0.1045	1182.27	1182.489	2	206.8	66.7%	1	R.ELLKDPLILK.N	1
*	PARC_3912_02032005-03.01838.01838.1	2.138	0.1043	1280.45	1278.356	8	288.5	59.1%	2	N.GSELELDSSDLL.Q	1
*	PARC_3912_02032005-02.01923.01923.1	2.4082	0.1056	1119.49	1119.349	3	540.5	72.2%	1	K.FVKNNASIIL.E	1

ORFP:YLR134W

3.9%

563

61912

6.4

PDC5 SGDID:S0004124, Chr XII from 410724-412415

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
	PARC_3912_02032005-05.03383.03383.1	2.8809	0.3503	1250.55	1251.469	1	561.9	63.6%	1	L.PANLVDLNVPAK.L	1 1
	PARC_3912_02032005-03.01624.01624.1	2.0386	0.3276	1092.39	1093.286	1	419.7	66.7%	2	R.NATFPGVQMK.F	1 1

Similarities: ORFP:YLR044C(2:0)

ORFP:YLR240W

3.8%

875

100921

7.8

VPS34 SGDID:S0004230, Chr XII from 617533-620160

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	PARC_3912_02032005-02.01983.01983.2	2.8614	0.1206	1658.81	1656.749	1	1001.4	70.8%	1	T.DNKDQENLNKYFQ.G	2
*	PARC_3912_02032005-05.00334.00334.2	2.888	0.117	2312.91	2313.715	3	445.8	42.1%	1	D.QLVVQIISLMNELLKNENVD.L	2

GR78_PLAFO

3.8%

655

72776

5.3

owl|Q05866| 78 KD GLUCOSE REGULATED PROTEIN HOMOLOG PRECURSOR (GRP 78) (IMMUNOGLOBULIN...

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
	PARC_3912_02032005-02.02356.02356.1	2.7099	0.3242	1081.5	1082.161	1	362.8	68.8%	1	V.PAYFNDAQR.Q	1 1 1 1 1 1
	PARC_3912_02032005-02.04158.04158.2	3.7989	0.096	1754.85	1754.031	2	1084.1	53.3%	3	I.ILGEELQDVVLLDVTP.L	2

Similarities: ORFP:YNL209W(1:1)
ORFP:YDL229W(1:1)
GR78_LYCES(1:1)
ORFP:YEL030W(1:1)
GR78_HUMAN(1:1)

ORFP:YGL023C

3.8%

635

70617

7.8

PIB2 SGDID:S0002991, Chr VII from 452107-450200, reverse complement

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	PARC_3912_02032005-05.03808.03808.2	2.866	0.1131	2648.09	2648.883	5	313.9	28.3%	1	K.VSETNITNDDLLNATLSSYYKKAS.N	2
*	PARC_3912_02032005-05.02874.02874.2	3.431	0.1221	2232.57	2232.452	13	380.2	34.2%	1	T.NITNDDLLNATLSSYYKKAS.N	2

ORFP:YGL060W

3.7%

641

73102

5.3

YBP2 SGDID:S0003028, Chr VII from 390068-391993

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	PARC_3912_02032005-04.02680.02680.1	1.8795	0.0947	1298.63	1299.348	48	127.6	50.0%	1	Y.NFCTNYSPAQP.S	1
*	PARC_3912_02032005-07.02130.02130.1	2.6224	0.1948	1574.29	1574.823	16	251.6	41.7%	2	L.KNHPGNIDKIYFK.T	1

U	KERATIN16	2	3	3.7%	534	57265	6.6	no description
U	KERATIN19	2	3	4.3%	468	51203	5.5	no description

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
2	PARC_3912_02032005-02.02502.02502.1	2.043	0.1159	1069.28	1070.233	1	313.0	75.0%	1	N.NKFASFIDK.V	1 1 1 1 1 1 1 1
2	PARC_3912_02032005-04.02679.02679.1	1.9611	0.1622	1278.56	1278.491	2	375.3	65.0%	2	K.LALDIEIATYR.K	1 1 1

Similarities: KERATIN22(1:1)
KERATIN13(2:0)
KERATIN20(2:0)
KERATIN17(1:1)
KERATIN18(1:1)
KERATIN14(1:1)
KERATIN15(1:1)

ORFP:YGR162W

3.6%

952

107101

6.0

TIF4631 SGDID:S0003394, Chr VII from 824061-826919

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	PARC_3912_02032005-04.03043.03043.1	1.8783	0.1596	946.23	945.921	11	395.3	64.3%	1	T.NYNNGSNY.T	1
*	PARC_3912_02032005-05.03074.03074.2	2.7013	0.2494	2788.89	2789.921	3	342.8	28.0%	1	K.IGLEAEIETTTDETDDGTNTVSHILN.V	2

ORFP:YKL073W

3.6%

881

99572

5.3

LHS1 SGDID:S0001556, Chr XI from 296071-298716

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	PARC_3912_02032005-03.02656.02656.1	1.9273	0.1624	1140.38	1138.411	1	333.6	61.1%	1	S.IKASMFSILQ.P	1
*	PARC_3912_02032005-02.03854.03854.2	3.1626	0.1695	2411.25	2409.526	6	289.8	33.3%	1	K.SRNNNETESTVINSADDKTTIV.N	2

GR78_MAIZE

3.6%

467

51689

4.9

owl|P24067| IMMUNOGLOBULIN BINDING PROTEIN HOMOLOG B70 (HEAT SHOCK PROTEIN...

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
	PARC_3912_02032005-03.02186.02186.2	4.6425	0.4937	1788.61	1789.082	1	930.8	65.6%	1	R.IINEPTAAAIAYGLDKK.G	2 2 2 2 3 2
2	PARC_3912_02032005-02.02458.02458.1	2.5911	0.3867	1190.5	1191.37	1	698.5	63.6%	2	E.PTAAAIAYGLDK.K	1 1 1 1 1 1 1 1

Similarities: ORFP:YLL024C(2:0)
ORFP:YAL005C(2:0)
ORFP:YBL075C(2:0)
ORFP:YER103W(2:0)
GR78_LYCES(2:0)
ORFP:YEL030W(1:1)
GR78_HUMAN(1:1)

KERATIN15

3.5%

629

64511

6.5

no description

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
2	PARC_3912_02032005-02.02502.02502.1	2.043	0.1159	1069.28	1070.233	1	313.0	75.0%	1	N.NKFASFIDK.V	1 1 1 1 1 1 1 1
*	PARC_3912_02032005-03.03550.03550.1	2.8359	0.2455	1304.58	1303.452	5	704.5	54.2%	4	R.SLDLDSIIAEVGA.Q	1

Similarities: KERATIN22(1:1)
KERATIN13(1:1)
KERATIN20(1:1)
KERATIN17(1:1)
KERATIN18(1:1)
KERATIN14(1:1)
KERATIN16(1:1)

ORFP:YNL049C

3.3%

876

98943

5.3

SFB2 SGDID:S0004994, Chr XIV from 537907-535277, reverse complement

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	PARC_3912_02032005-02.02062.02062.1	1.9503	0.1188	1053.43	1056.077	1	494.0	62.5%	1	L.HLQDSDNQV.P	1
*	PARC_3912_02032005-05.02291.02291.2	2.662	0.1049	2226.09	2226.463	7	226.0	34.2%	7	L.HDMPDEVGLPDFEGKTVLPE.P	2

ORFP:YEL030W

3.3%

644

70085

6.3

ECM10 SGDID:S0000756, Chr V from 94644-96578

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
	PARC_3912_02032005-02.02356.02356.1	2.7099	0.3242	1081.5	1082.161	1	362.8	68.8%	1	V.PAYFNDAQR.Q	1 1 1 1 1 1
*2	PARC_3912_02032005-02.02458.02458.1	2.5911	0.3867	1190.5	1191.37	1	698.5	63.6%	2	E.PTAAALAYGLDK.S	1 1 1 1 1 1 1 1

Similarities: ORFP:YLL024C(1:1)
ORFP:YNL209W(1:1)
ORFP:YDL229W(1:1)
ORFP:YAL005C(1:1)
ORFP:YBL075C(1:1)
ORFP:YER103W(1:1)
GR78_LYCES(2:0)
GR78_PLAFO(1:1)
GR78_MAIZE(1:1)
GR78_HUMAN(2:0)

U	GR78_HUMAN	2	3	3.2%	653	72116	5.1	owl\|P11021\| 78 KD GLUCOSE REGULATED PROTEIN PRECURSOR (GRP 78) (IMMUNOGLOBULIN...
U	ORFP:YJL034W	2	3	3.1%	682	74468	4.9	KAR2 SGDID:S0003571, Chr X from 381023-383071
U	GR78_YEAST	2	3	3.1%	682	74468	4.9	owl\|P16474\| 78 KD GLUCOSE REGULATED PROTEIN HOMOLOG PRECURSOR (GRP 78) (IMMUNOGLOBULIN...
U	GR78_SCHPO	2	3	3.2%	663	73081	4.9	owl\|P36604\| 78 KD GLUCOSE REGULATED PROTEIN HOMOLOG PRECURSOR (GRP 78) (IMMUNOGLOBULIN...
U	GR78_RAT	2	3	3.2%	654	72347	5.2	owl\|P06761\| 78 KD GLUCOSE REGULATED PROTEIN PRECURSOR (GRP 78) (IMMUNOGLOBULIN...
U	GR78_MOUSE	2	3	3.2%	655	72421	5.2	owl\|P20029\| 78 KD GLUCOSE REGULATED PROTEIN PRECURSOR (GRP 78) (IMMUNOGLOBULIN...
U	GR78_MESAU	2	3	3.2%	654	72379	5.2	owl\|P07823\| 78 KD GLUCOSE REGULATED PROTEIN PRECURSOR (GRP 78) (IMMUNOGLOBULIN...
U	GR78_KLULA	2	3	3.1%	679	74448	4.9	owl\|P22010\| 78 KD GLUCOSE REGULATED PROTEIN HOMOLOG PRECURSOR (GRP 78) (IMMUNOGLOBULIN...

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
	PARC_3912_02032005-02.02356.02356.1	2.7099	0.3242	1081.5	1082.161	1	362.8	68.8%	1	V.PAYFNDAQR.Q	1 1 1 1 1 1
2	PARC_3912_02032005-02.02458.02458.1	2.5911	0.3867	1190.5	1191.37	1	698.5	63.6%	2	E.PTAAAIAYGLDK.R	1 1 1 1 1 1 1 1

Similarities: ORFP:YLL024C(1:1)
ORFP:YNL209W(1:1)
ORFP:YDL229W(1:1)
ORFP:YAL005C(1:1)
ORFP:YBL075C(1:1)
ORFP:YER103W(1:1)
GR78_LYCES(2:0)
GR78_PLAFO(1:1)
GR78_MAIZE(1:1)
ORFP:YEL030W(2:0)

ORFP:YJR045C

3.2%

654

70628

5.6

SSC1 SGDID:S0003806, Chr X from 521296-519332, reverse complement

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	PARC_3912_02032005-02.02023.02023.1	1.8233	0.1941	1134.28	1135.262	13	219.6	61.1%	1	V.NPENTLFATK.R	1
*	PARC_3912_02032005-03.02602.02602.1	2.4882	0.2868	1144.28	1144.359	2	340.0	60.0%	1	S.PAQIGGFVLNK.M	1

ORFP:YKL135C

2.9%

726

81869

5.2

APL2 SGDID:S0001618, Chr XI from 188643-186463, reverse complement

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	PARC_3912_02032005-03.01779.01779.1	2.2119	0.1132	1282.27	1279.488	7	256.4	55.6%	3	A.KLFQLNKDLC.V	1
*	PARC_3912_02032005-06.02451.02451.1	2.1579	0.1608	1184.12	1186.348	10	190.2	55.0%	1	C.VELGVVEDLVN.A	1

ORFP:YIL030C

2.6%

1319

151454

6.3

SSM4 SGDID:S0001292, Chr IX from 300008-296049, reverse complement

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	PARC_3912_02032005-05.03235.03235.2	2.5399	0.0861	1631.13	1629.992	323	173.3	37.5%	1	L.IFQILFALKCTFK.V	2
*	PARC_3912_02032005-04.02899.02899.2	3.9021	0.1117	2336.43	2334.653	1	667.2	40.0%	3	V.PDGVLMRVPSSDIVSRNYVQT.M	2

ORFP:YPL110C

2.3%

1223

138014

6.8

YPL110C SGDID:S0006031, Chr XVI from 344738-341067, reverse complement

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	PARC_3912_02032005-06.05186.05186.1	2.064	0.1459	1222.02	1221.569	122	237.3	50.0%	1	M.LSLKQPVIPIL.F	1
*	PARC_3912_02032005-06.00486.00486.2	3.8716	0.1811	1765.75	1766.18	1	904.5	62.5%	19	K.KWNLLGIVSAAAPILKA.P	2

ORFP:YDL171C

2.2%

2145

238100

6.6

GLT1 SGDID:S0002330, Chr IV from 155641-149204, reverse complement

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	PARC_3912_02032005-02.03840.03840.3	3.8941	0.1665	3792.05	3791.308	106	225.5	16.4%	2	A.KPGEGGELPAHKVSKDIAKTRHSTPNVGLISPPPHH.D	3
*	PARC_3912_02032005-04.02751.02751.1	1.9799	0.0804	1142.34	1144.137	38	202.7	50.0%	1	L.DDSSYSIDGGK.T	1

ORFP:YLR001C

2.2%

862

97618

6.4

YLR001C SGDID:S0003991, Chr XII from 153976-151388, reverse complement

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	PARC_3912_02032005-02.02652.02652.1	1.9775	0.1459	1053.31	1054.098	41	299.1	62.5%	2	I.DLEQDFSSL.R	1
*	PARC_3912_02032005-03.02574.02574.1	2.251	0.1231	929.56	930.135	1	313.1	66.7%	20	R.LPGIAVGFGV.I	1
*	PARC_3912_02032005-03.02400.02400.2	2.6328	0.2633	816.73	816.976	8	614.9	68.8%	1	L.PGIAVGFGV.I	2

ORFP:YIL115C

2.1%

1460

158907

4.8

NUP159 SGDID:S0001377, Chr IX from 148706-144324, reverse complement

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	PARC_3912_02032005-04.02428.02428.2	2.537	0.1463	2409.31	2410.864	1	317.1	40.0%	1	F.GFKFLGQKQILPSFNEKLPFA.S	2
*	PARC_3912_02032005-05.00275.00275.1	1.9946	0.0916	1128.58	1128.227	8	535.7	55.6%	1	D.VSAKINHTEE.L	1

ORFP:YBR235W

2.1%

1120

123998

8.5

YBR235W SGDID:S0000439, Chr II from 686856-690218

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	PARC_3912_02032005-03.01600.01600.1	1.95	0.1183	1284.68	1286.168	349	172.1	40.0%	1	P.CESEDSDLDTD.L	1
*	PARC_3912_02032005-06.01922.01922.1	1.9668	0.1988	1006.56	1004.989	1	549.5	54.5%	1	S.NGNGTGSGIGNG.N	1

ORFP:YIR019C

1.7%

1367

136110

4.3

MUC1 SGDID:S0001458, Chr IX from 393672-389569, reverse complement

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	PARC_3912_02032005-05.02854.02854.1	2.0678	0.1881	1232.46	1233.318	5	452.4	50.0%	3	E.SSSVPVPTPSSST.T	1
*	PARC_3912_02032005-05.03126.03126.1	1.8684	0.0892	1172.52	1175.324	6	374.8	55.6%	1	G.YTTKSIPTTY.I	1

ORFP:YBR239C

1.5%

529

60311

8.4

YBR239C SGDID:S0000443, Chr II from 699898-698309, reverse complement

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	PARC_3912_02032005-04.00082.00082.1	1.9123	0.1529	816.43	814.074	35	177.9	50.0%	16	S.GLPLMILG.N	1

ORFP:YKL203C

1.4%

2473

281509

7.5

TOR2 SGDID:S0001686, Chr XI from 63356-55935, reverse complement

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	PARC_3912_02032005-06.00034.00034.1	1.8189	0.0932	1375.51	1373.651	60	327.5	45.5%	1	V.LIPSSDIEVMRL.A	1
*	PARC_3912_02032005-03.03300.03300.2	2.7067	0.1633	2431.67	2433.811	3	333.5	33.3%	1	T.VNSRILNLLSISLSGEKFIQSN.Q	2

ORFP:YJL130C

1.4%

2214

245123

5.9

URA2 SGDID:S0003666, Chr X from 172065-165421, reverse complement

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	PARC_3912_02032005-03.01583.01583.1	1.9247	0.1009	1079.36	1080.322	6	581.7	75.0%	1	F.RGRHILSIK.Q	1
*	PARC_3912_02032005-04.02764.02764.2	2.7354	0.1816	2363.03	2361.747	29	259.8	27.5%	1	L.REELRKAGLLGVESIELTPHI.I	2

ORFP:YOL076W

1.1%

796

92809

7.7

MDM20 SGDID:S0005436, Chr XV from 187023-189413

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	PARC_3912_02032005-02.04070.04070.1	1.891	0.2275	986.4	986.2	6	452.8	62.5%	1	N.IKNSLLGIQ.K	1
*2	PARC_3912_02032005-02.03742.03742.1	1.8142	0.0841	631.07	630.762	32	304.4	70.0%	1	N.SLLGIQ.K	1 1

Similarities: ORFP:YJL115W(1:1)

ORFP:YDR457W

1.0%

3268

374186

5.2

TOM1 SGDID:S0002865, Chr IV from 1369778-1379584

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	PARC_3912_02032005-02.02804.02804.1	1.9676	0.085	1054.41	1053.461	9	386.9	68.8%	1	S.LLKLVLKLL.S	1
*	PARC_3912_02032005-07.03996.03996.3	3.5998	0.0822	2649.17	2649.889	7	605.1	29.5%	3	L.EAIPEDIREGILDTEAEEQRMFG.R	3

ORFP:YFL007W

1.0%

2143

245993

5.9

BLM3 SGDID:S0001887, Chr VI from 123474-129905

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	PARC_3912_02032005-04.02019.02019.1	2.1057	0.1082	1134.42	1135.479	4	136.6	61.1%	1	E.IIHLVVKSLL.S	1
*	PARC_3912_02032005-04.03718.03718.1	2.1657	0.1785	1209.51	1211.401	45	84.0	45.5%	2	N.DPDGLGLPLKSV.P	1

ORFP:YKR101W

1.0%

678

79929

9.3

SIR1 SGDID:S0001809, Chr XI from 640097-642133

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	PARC_3912_02032005-03.02290.02290.1	2.3447	0.155	931.51	931.129	10	220.4	75.0%	15	K.RKPINFR.S	1

ORFP:YFL033C

0.8%

1770

196530

6.5

RIM15 SGDID:S0001861, Chr VI from 74425-69113, reverse complement

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	PARC_3912_02032005-04.01514.01514.2	3.2203	0.0942	1639.17	1640.833	7	512.7	50.0%	13	G.ANSTTPIVAITNYFQ.E	2

ORFP:YPR010C

0.7%

1203

135742

7.7

RPA135 SGDID:S0006214, Chr XVI from 581191-577580, reverse complement

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	PARC_3912_02032005-04.02278.02278.1	2.3641	0.176	929.53	927.086	7	245.1	62.5%	10	P.GLPIDLEIG.Y	1

ORFP:YLR087C

0.4%

2958

338258

5.9

CSF1 SGDID:S0004077, Chr XII from 315732-306856, reverse complement

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	PARC_3912_02032005-03.02599.02599.2	3.1676	0.2014	1591.71	1591.862	2	647.0	63.6%	12	Y.HRCPFLLPLFYQ.D	2

	Proteins	Peptide IDs	Copies
Unfiltered	4910	18732	24165
Redundant	105	507	2390
Nonredundant	88	422	2263

/data/1/aobailey/Antczak/3912_02032005/parc