D parc

DTASelect v1.9
/wfs/bfd/16/Aaron/November2004/Kellogg/control1_11112004/parc
/scratch/yates/EBI/yeastorf5.fasta
SEQUEST 2.7 in SQT format.

Jump to the summary table.

sequest.params modifications:

*	X	0.0
#	X	0.0
@	X	0.0
Static	C	57.0

true	Use criteria
1.8	Minimum +1 XCorr
2.5	Minimum +2 XCorr
3.5	Minimum +3 XCorr
0.08	Minimum DeltCN
1	Minimum charge state
3	Maximum charge state
0.0	Minimum ion proportion
1000	Maximum Sp rank
-1.0	Minimum Sp score
Include	Modified peptide inclusion
Any	Tryptic status requirement
true	Multiple, ambiguous IDs allowed
Ignore	Peptide validation handling
XCorr	Purge duplicate peptides by protein
false	Include only loci with unique peptide
false	Remove subset proteins
Ignore	Locus validation handling
0	Minimum modified peptides per locus
10	Minimum redundancy for low coverage loci
2	Minimum peptides per locus

Locus Key:

Validation Status

Locus

Sequence Count

Spectrum Count

Sequence Coverage

Length

MolWt

Descriptive Name

Similarity Key:

Locus

# of identical peptides

# of differing peptides

KERATIN02

46.8%

622

61987

5.2

no description

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	PARC_control1-11112004-03.00899.00899.2	3.7922	0.4356	1234.55	1233.283	1	841.3	66.7%	1	T.SGGGGGGGLGSGGSIR.S	2
*	PARC_control1-11112004-03.00850.00850.2	3.0721	0.3522	1235.77	1236.24	1	1051.9	70.8%	1	R.FSSSSGYGGGSSR.V	2
*	PARC_control1-11112004-04.02337.02337.2	5.4273	0.5893	2705.31	2706.761	1	1355.1	38.7%	3	R.GGGGSFGYSYGGGSGGGFSASSLGGGFGGGSR.G	2
*	PARC_control1-11112004-04.02369.02369.3	4.5813	0.4595	2706.95	2706.761	1	694.9	25.0%	1	R.GGGGSFGYSYGGGSGGGFSASSLGGGFGGGSR.G	3
*	PARC_control1-11112004-03.01566.01566.2	3.0921	0.3326	2024.61	2024.07	2	521.7	32.6%	1	Y.SYGGGSGGGFSASSLGGGFGGGSR.G	2
*	PARC_control1-11112004-03.01154.01154.2	5.2406	0.4655	1587.21	1587.684	1	2808.8	84.6%	4	K.VQALEEANNDLENK.I	2
*	PARC_control1-11112004-03.03020.03020.2	2.8179	0.3667	2537.79	2539.802	1	544.7	38.1%	1	S.PYYNTIDDLKDQIVDLTVGNNK.T	2
*	PARC_control1-11112004-03.01207.01207.2	2.8808	0.3169	1158.09	1158.257	1	438.2	70.0%	1	R.QGVDADINGLR.Q	2
*	PARC_control1-11112004-03.02723.02723.2	5.7467	0.4832	2171.73	2172.47	1	2823.4	73.5%	2	K.SDLEMQYETLQEELMALK.K	2
*	PARC_control1-11112004-04.02777.02777.3	6.8054	0.4584	3265.82	3266.413	1	3045.2	37.5%	9	K.DIENQYETQITQIEHEVSSSGQEVQSSAK.E	3
*	PARC_control1-11112004-03.03164.03164.2	3.7288	0.4716	2739.11	2739.039	1	965.7	43.2%	1	R.YCGQLQMIQEQISNLEAQITDVR.Q	2
*	PARC_control1-11112004-03.02091.02091.2	5.7113	0.4747	2095.65	2096.308	1	2356.2	78.1%	6	R.QEIECQNQEYSLLLSIK.M	2
*	PARC_control1-11112004-03.00788.00788.2	5.2454	0.3327	1791.65	1792.732	1	876.4	45.5%	1	R.GGSGGSYGGGGSGGGYGGGSGSR.G	2
*	PARC_control1-11112004-03.00939.00939.2	2.89	0.3061	2408.53	2408.249	19	148.3	21.9%	1	G.GSGSGGGSGGGYGGGSGGGHSGGSGGGHSGGSG.G	2
*	PARC_control1-11112004-04.01525.01525.3	6.6477	0.4565	3225.44	3225.112	1	1187.9	23.1%	2	R.GGSGGSHGGGSGFGGESGGSYGGGEEASGSGGGYGGGSGK.S	3

ORFP:YDL229W

118

43.2%

613

66602

5.4

SSB1 SGDID:S0002388, Chr IV from 44066-45907

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
	PARC_control1-11112004-03.01734.01734.2	3.0632	0.2806	2227.59	2228.343	1	749.2	42.1%	1	Y.SCVATYESSVEIIANEQGNR.V	2 2
	PARC_control1-11112004-04.01506.01506.1	1.9836	0.1048	794.58	794.883	1	311.7	66.7%	1	R.NTVFDAK.R	1 1 1 1 1 1 1
	PARC_control1-11112004-03.02222.02222.2	6.0715	0.4462	2161.49	2161.414	1	1765.9	72.2%	13	K.VIDVDGNPVIEVQYLEETK.T	2 2
	PARC_control1-11112004-03.02223.02223.3	4.2332	0.3229	2161.49	2161.414	1	1545.2	41.7%	1	K.VIDVDGNPVIEVQYLEETK.T	3 3
	PARC_control1-11112004-04.02642.02642.2	3.9171	0.2159	1555.05	1552.826	1	1561.7	84.6%	3	K.TFSPQEISAMVLTK.M	2 2
	PARC_control1-11112004-01.01695.01695.1	2.5265	0.2137	1081.71	1082.161	3	291.7	68.8%	2	V.PAYFNDAQR.Q	1 1 1 1 1
	PARC_control1-11112004-03.01990.01990.2	5.9551	0.5881	1730.77	1731.002	1	1556.0	73.5%	3	R.IINEPTAAAIAYGLGAGK.S	2 2
	PARC_control1-11112004-03.01967.01967.3	4.9776	0.3178	1732.58	1731.002	1	3035.3	50.0%	1	R.IINEPTAAAIAYGLGAGK.S	3 3
	PARC_control1-11112004-03.01960.01960.1	3.8062	0.4443	1260.8	1261.464	1	964.2	69.2%	1	E.PTAAAIAYGLGAGK.S	1 1
	PARC_control1-11112004-03.01958.01958.1	2.1344	0.1202	921.43	921.084	5	608.6	66.7%	1	A.AIAYGLGAGK.S	1 1
	PARC_control1-11112004-03.01086.01086.2	3.5017	0.3002	1063.65	1063.109	1	1226.7	88.9%	1	K.TGLDISDDAR.A	2 2
	PARC_control1-11112004-04.03153.03153.3	4.7483	0.4491	2965.19	2965.151	1	601.1	25.0%	1	R.TLSSVTQTTVEVDSLFDGEDFESSLTR.A	3 3
	PARC_control1-11112004-04.01969.01969.2	4.93	0.1246	1460.21	1460.627	1	2086.0	84.6%	3	K.SQIDEVVLVGGSTR.I	2 2
	PARC_control1-11112004-02.01756.01756.1	2.4591	0.3098	1041.54	1042.177	1	836.1	75.0%	6	K.LLSDFFDGK.Q	1 1
	PARC_control1-11112004-03.01940.01940.2	3.2842	0.1722	1041.85	1042.177	1	611.2	87.5%	9	K.LLSDFFDGK.Q	2 2
	PARC_control1-11112004-04.02689.02689.3	5.3876	0.354	2894.57	2895.106	1	1384.1	29.5%	1	K.SINPDEAVAYGAAVQGAILTGQSTSDETK.D	3 3
*	PARC_control1-11112004-03.01730.01730.2	4.7738	0.4568	2463.85	2464.617	1	994.5	50.0%	9	R.TFTTCADNQTTVQFPVYQGER.V	2
	PARC_control1-11112004-03.02098.02098.2	3.4224	0.3165	1278.67	1279.433	1	805.2	85.0%	4	K.ENTLLGEFDLK.N	2 2
	PARC_control1-11112004-03.02094.02094.1	2.8496	0.2708	1279.68	1279.433	1	276.8	65.0%	2	K.ENTLLGEFDLK.N	1 1
	PARC_control1-11112004-03.01126.01126.1	1.8658	0.0954	1218.8	1219.34	1	280.7	63.6%	1	K.SSNITISNAVGR.L	1 1
	PARC_control1-11112004-03.01123.01123.2	3.754	0.3067	1219.13	1219.34	1	1898.2	90.9%	1	K.SSNITISNAVGR.L	2 2
	PARC_control1-11112004-02.02170.02170.2	6.0307	0.5268	2166.61	2167.418	1	1914.7	71.1%	27	R.LESYVASIEQTVTDPVLSSK.L	2 2
	PARC_control1-11112004-03.02315.02315.2	3.2313	0.138	2281.47	2280.577	1	986.6	45.0%	1	R.LESYVASIEQTVTDPVLSSKL.K	2 2
2	PARC_control1-11112004-03.00672.00672.1	1.9442	0.0855	630.4	630.762	1	584.4	80.0%	1	D.PVLSSK.L	1 1
	PARC_control1-11112004-03.02682.02682.2	6.1418	0.3608	2415.19	2412.656	1	1504.4	47.7%	23	K.IEAALSDALAALQIEDPSADELR.K	2 2
	PARC_control1-11112004-04.05290.05290.2	3.758	0.3066	2540.33	2540.83	1	362.6	37.0%	1	K.IEAALSDALAALQIEDPSADELRK.A	2 2

Similarities: ORFP:YNL209W(25:1)
ORFP:YLL024C(1:25)
ORFP:YAL005C(1:25)
ORFP:YER103W(1:25)
ORFP:YBL075C(1:25)
GR78_HUMAN(2:24)
GR78_YEAST(1:25)
GR78_LYCES(1:25)

ORFP:YNL209W

114

43.2%

613

66595

5.5

SSB2 SGDID:S0005153, Chr XIV from 252058-253899

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
	PARC_control1-11112004-03.01734.01734.2	3.0632	0.2806	2227.59	2228.343	1	749.2	42.1%	1	Y.SCVATYESSVEIIANEQGNR.V	2 2
	PARC_control1-11112004-04.01506.01506.1	1.9836	0.1048	794.58	794.883	1	311.7	66.7%	1	R.NTVFDAK.R	1 1 1 1 1 1 1
	PARC_control1-11112004-03.02222.02222.2	6.0715	0.4462	2161.49	2161.414	1	1765.9	72.2%	13	K.VIDVDGNPVIEVQYLEETK.T	2 2
	PARC_control1-11112004-03.02223.02223.3	4.2332	0.3229	2161.49	2161.414	1	1545.2	41.7%	1	K.VIDVDGNPVIEVQYLEETK.T	3 3
	PARC_control1-11112004-04.02642.02642.2	3.9171	0.2159	1555.05	1552.826	1	1561.7	84.6%	3	K.TFSPQEISAMVLTK.M	2 2
	PARC_control1-11112004-01.01695.01695.1	2.5265	0.2137	1081.71	1082.161	3	291.7	68.8%	2	V.PAYFNDAQR.Q	1 1 1 1 1
	PARC_control1-11112004-03.01990.01990.2	5.9551	0.5881	1730.77	1731.002	1	1556.0	73.5%	3	R.IINEPTAAAIAYGLGAGK.S	2 2
	PARC_control1-11112004-03.01967.01967.3	4.9776	0.3178	1732.58	1731.002	1	3035.3	50.0%	1	R.IINEPTAAAIAYGLGAGK.S	3 3
	PARC_control1-11112004-03.01960.01960.1	3.8062	0.4443	1260.8	1261.464	1	964.2	69.2%	1	E.PTAAAIAYGLGAGK.S	1 1
	PARC_control1-11112004-03.01958.01958.1	2.1344	0.1202	921.43	921.084	5	608.6	66.7%	1	A.AIAYGLGAGK.S	1 1
	PARC_control1-11112004-03.01086.01086.2	3.5017	0.3002	1063.65	1063.109	1	1226.7	88.9%	1	K.TGLDISDDAR.A	2 2
	PARC_control1-11112004-04.03153.03153.3	4.7483	0.4491	2965.19	2965.151	1	601.1	25.0%	1	R.TLSSVTQTTVEVDSLFDGEDFESSLTR.A	3 3
	PARC_control1-11112004-04.01969.01969.2	4.93	0.1246	1460.21	1460.627	1	2086.0	84.6%	3	K.SQIDEVVLVGGSTR.I	2 2
	PARC_control1-11112004-02.01756.01756.1	2.4591	0.3098	1041.54	1042.177	1	836.1	75.0%	6	K.LLSDFFDGK.Q	1 1
	PARC_control1-11112004-03.01940.01940.2	3.2842	0.1722	1041.85	1042.177	1	611.2	87.5%	9	K.LLSDFFDGK.Q	2 2
	PARC_control1-11112004-04.02689.02689.3	5.3876	0.354	2894.57	2895.106	1	1384.1	29.5%	1	K.SINPDEAVAYGAAVQGAILTGQSTSDETK.D	3 3
*	PARC_control1-11112004-03.01770.01770.2	4.9669	0.4593	2418.67	2419.61	1	1622.0	60.0%	5	R.TFTTVSDNQTTVQFPVYQGER.V	2
	PARC_control1-11112004-03.02098.02098.2	3.4224	0.3165	1278.67	1279.433	1	805.2	85.0%	4	K.ENTLLGEFDLK.N	2 2
	PARC_control1-11112004-03.02094.02094.1	2.8496	0.2708	1279.68	1279.433	1	276.8	65.0%	2	K.ENTLLGEFDLK.N	1 1
	PARC_control1-11112004-03.01126.01126.1	1.8658	0.0954	1218.8	1219.34	1	280.7	63.6%	1	K.SSNITISNAVGR.L	1 1
	PARC_control1-11112004-03.01123.01123.2	3.754	0.3067	1219.13	1219.34	1	1898.2	90.9%	1	K.SSNITISNAVGR.L	2 2
	PARC_control1-11112004-02.02170.02170.2	6.0307	0.5268	2166.61	2167.418	1	1914.7	71.1%	27	R.LESYVASIEQTVTDPVLSSK.L	2 2
	PARC_control1-11112004-03.02315.02315.2	3.2313	0.138	2281.47	2280.577	1	986.6	45.0%	1	R.LESYVASIEQTVTDPVLSSKL.K	2 2
2	PARC_control1-11112004-03.00672.00672.1	1.9442	0.0855	630.4	630.762	1	584.4	80.0%	1	D.PVLSSK.L	1 1
	PARC_control1-11112004-03.02682.02682.2	6.1418	0.3608	2415.19	2412.656	1	1504.4	47.7%	23	K.IEAALSDALAALQIEDPSADELR.K	2 2
	PARC_control1-11112004-04.05290.05290.2	3.758	0.3066	2540.33	2540.83	1	362.6	37.0%	1	K.IEAALSDALAALQIEDPSADELRK.A	2 2

Similarities: ORFP:YDL229W(25:1)
ORFP:YLL024C(1:25)
ORFP:YAL005C(1:25)
ORFP:YER103W(1:25)
ORFP:YBL075C(1:25)
GR78_HUMAN(2:24)
GR78_YEAST(1:25)
GR78_LYCES(1:25)

ORFP:YKR048C

38.6%

417

47885

4.3

NAP1 SGDID:S0001756, Chr XI from 526277-525024, reverse complement

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	PARC_control1-11112004-04.02833.02833.3	4.1613	0.4625	3609.38	3608.941	1	956.4	25.0%	1	R.AQAQEQDDKIGTINEEDILANQPLLLQSIQDR.L	3
*	PARC_control1-11112004-03.02503.02503.2	5.8272	0.4632	2594.31	2594.925	1	1398.0	54.5%	7	K.IGTINEEDILANQPLLLQSIQDR.L	2
*	PARC_control1-11112004-03.02538.02538.3	6.0583	0.285	2595.17	2594.925	1	1949.4	38.6%	23	K.IGTINEEDILANQPLLLQSIQDR.L	3
*	PARC_control1-11112004-03.01622.01622.2	4.2773	0.4651	1647.59	1647.869	1	1252.2	71.9%	1	R.LGSLVGQDSGYVGGLPK.N	2
*	PARC_control1-11112004-03.02070.02070.2	4.4542	0.167	1544.29	1543.731	1	1945.1	81.8%	1	K.EFQVEMFELENK.F	2
*	PARC_control1-11112004-03.02195.02195.2	5.9857	0.4867	2303.51	2304.467	1	2496.4	68.4%	8	K.GQEIVESLNETELLVDEEEK.A	2
*	PARC_control1-11112004-03.03386.03386.2	3.4417	0.4575	2313.01	2313.523	1	1002.9	52.6%	2	R.DAEVLEYLQDIGLEYLTDGR.P	2
*	PARC_control1-11112004-02.02042.02042.2	5.3838	0.4929	1877.55	1877.026	1	1323.8	80.0%	8	R.FDSSANPFFTNDILCK.T	2
*	PARC_control1-11112004-04.03661.03661.2	4.6439	0.4829	1799.31	1800.064	1	1220.3	75.0%	12	K.ITPIESFFNFFDPPK.I	2
*	PARC_control1-11112004-02.01302.01302.2	3.8765	0.3057	2134.03	2134.128	1	1735.9	59.4%	1	K.IQNEDQDEELEEDLEER.L	2
*	PARC_control1-11112004-03.01814.01814.1	2.348	0.3026	1349.55	1350.555	1	758.5	68.2%	1	R.LALDYSIGEQLK.D	1
*	PARC_control1-11112004-03.01806.01806.2	3.9333	0.3376	1350.27	1350.555	1	1981.3	86.4%	2	R.LALDYSIGEQLK.D	2

KERATIN03

100

36.6%

593

59519

5.2

no description

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	PARC_control1-11112004-03.01650.01650.2	4.9723	0.5966	1708.15	1708.784	1	1670.9	66.7%	5	K.GSLGGGFSSGGFSGGSFSR.G	2
*	PARC_control1-11112004-03.01119.01119.1	2.6731	0.2722	1381.67	1382.467	1	956.2	68.2%	1	R.ALEESNYELEGK.I	1
*	PARC_control1-11112004-03.01118.01118.2	4.3131	0.3846	1382.17	1382.467	1	1848.8	81.8%	3	R.ALEESNYELEGK.I	2
*	PARC_control1-11112004-04.02871.02871.3	6.8171	0.3269	2368.07	2368.652	1	2965.4	48.8%	5	K.NQILNLTTDNANILLQIDNAR.L	3
*	PARC_control1-11112004-04.02881.02881.2	7.1145	0.4505	2368.21	2368.652	1	3207.7	70.0%	20	K.NQILNLTTDNANILLQIDNAR.L	2
*	PARC_control1-11112004-03.03163.03163.2	5.9969	0.5419	2096.77	2097.385	1	2421.2	70.6%	7	K.ADLEMQIESLTEELAYLK.K	2
*	PARC_control1-11112004-03.02699.02699.3	3.692	0.2537	2873.27	2874.213	1	535.4	23.1%	2	R.NVSTGDVNVEMNAAPGVDLTQLLNNMR.S	3
*	PARC_control1-11112004-03.01006.01006.2	4.2957	0.3967	1365.77	1366.43	1	1805.4	85.0%	2	R.SQYEQLAEQNR.K	2
*	PARC_control1-11112004-02.01842.01842.2	5.9894	0.5203	1997.65	1998.151	1	2147.2	78.1%	22	K.ELTTEIDNNIEQISSYK.S	2
*	PARC_control1-11112004-03.02014.02014.1	2.7458	0.2126	1310.39	1311.391	1	609.8	70.0%	1	I.DNNIEQISSYK.S	1
*	PARC_control1-11112004-04.02821.02821.2	5.6076	0.4419	1797.81	1798.09	1	2867.7	76.7%	17	R.NVQALEIELQSQLALK.Q	2
*	PARC_control1-11112004-03.01343.01343.2	4.1665	0.4642	1390.21	1391.478	1	1241.7	83.3%	3	K.QSLEASLAETEGR.Y	2
*	PARC_control1-11112004-04.03521.03521.2	5.5286	0.5579	2747.07	2748.075	1	2348.9	59.1%	2	R.YCVQLSQIQAQISALEEQLQQIR.A	2
*	PARC_control1-11112004-04.03517.03517.3	4.5928	0.4357	2749.73	2748.075	1	876.1	35.2%	1	R.YCVQLSQIQAQISALEEQLQQIR.A	3
*	PARC_control1-11112004-03.01798.01798.2	5.3631	0.4572	2083.51	2084.21	1	2241.8	68.8%	5	R.AETECQNTEYQQLLDIK.I	2
*	PARC_control1-11112004-03.01058.01058.2	3.94	0.3126	1165.89	1166.276	1	1542.4	93.8%	3	R.LENEIQTYR.S	2
*	PARC_control1-11112004-03.01000.01000.2	2.5889	0.3437	1263.97	1263.307	1	1274.9	69.2%	1	R.SLLEGEGSSGGGGR.G	2

gi|7463016|pir||S77957

35.3%

269

27961

6.7

lysyl endopeptidase (EC 3.4.21.50) - Lysobacter enzymogenes

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	PARC_control1-11112004-03.01026.01026.2	5.7983	0.526	2262.97	2262.355	1	1259.7	50.0%	1	R.APGSSSSGANGDGSLAQSQTGAVVR.A	2
*	PARC_control1-11112004-01.02847.02847.2	5.5022	0.4114	2543.49	2543.792	1	1430.8	47.8%	1	R.ATNAASDFTLLELNTAANPAYNLF.W	2
*	PARC_control1-11112004-03.03284.03284.3	5.1868	0.5126	3315.74	3315.626	1	1336.2	27.6%	5	R.ATNAASDFTLLELNTAANPAYNLFWAGWDR.R	3
*	PARC_control1-11112004-03.03284.03284.2	2.6339	0.1624	2210.83	2210.413	1	825.1	44.4%	1	L.ELNTAANPAYNLFWAGWDR.R	3
*	PARC_control1-11112004-03.01306.01306.2	4.3923	0.2981	1428.01	1428.544	1	1497.1	84.6%	1	R.VFTSWTGGGTSATR.L	2
*	PARC_control1-11112004-01.02598.02598.2	6.1474	0.4848	2506.41	2506.685	1	1861.8	52.1%	4	R.LSDWLDAAGTGAQFIDGLDSTGTPP.V	2
*	PARC_control1-11112004-01.02666.02666.2	6.72	0.5484	2606.85	2605.818	1	1820.5	52.0%	3	R.LSDWLDAAGTGAQFIDGLDSTGTPPV.-	2

U	ORFP:YDR418W	5	12	32.1%	165	17823	9.4	RPL12B SGDID:S0002826, Chr IV from 1301604-1302101
U	ORFP:YEL054C	5	12	32.1%	165	17823	9.4	RPL12A SGDID:S0000780, Chr V from 53218-52721, reverse complement

Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
PARC_control1-11112004-03.01139.01139.1	2.7916	0.3004	1297.63	1298.482	5	445.1	46.4%	1	R.AVGGEVGASAALAPK.I	1
PARC_control1-11112004-03.01138.01138.2	4.2484	0.4377	1298.25	1298.482	1	2107.1	82.1%	4	R.AVGGEVGASAALAPK.I	2
PARC_control1-11112004-04.02637.02637.2	3.488	0.4285	1814.13	1814.133	1	457.1	55.6%	3	R.QAAASVVPSASSLVITALK.E	2
PARC_control1-11112004-01.02239.02239.1	2.4185	0.1929	1186.76	1187.422	1	916.0	63.6%	1	V.PSASSLVITALK.E	1
PARC_control1-11112004-03.02078.02078.2	4.6543	0.3699	2074.61	2075.24	1	804.6	61.1%	3	K.NPHDIIEGINAGEIEIPEN.-	2

ORFP:YEL026W

31.7%

126

13569

7.9

SNU13 SGDID:S0000752, Chr V from 101943-102323

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	PARC_control1-11112004-04.03909.03909.2	6.1623	0.3888	2567.33	2567.948	1	2261.7	58.7%	5	K.AFPLADAALTQQILDVVQQAANLR.Q	2
*	PARC_control1-11112004-04.03941.03941.3	6.3359	0.4351	2568.47	2567.948	1	3212.9	43.5%	8	K.AFPLADAALTQQILDVVQQAANLR.Q	3
*	PARC_control1-11112004-04.01871.01871.2	5.0811	0.4746	1572.25	1572.799	1	1679.2	80.0%	4	R.PVIAASITTNDASAIK.T	2

KERATIN22

31.3%

645

65865

8.0

no description

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	PARC_control1-11112004-03.01010.01010.2	3.8771	0.4161	1255.01	1255.33	1	2063.4	80.8%	1	R.GFSSGSAVVSGGSR.R	2
*	PARC_control1-11112004-04.02310.02310.2	4.4272	0.5816	1839.39	1840.005	1	1126.2	54.8%	2	K.SISISVAGGGGGFGAAGGFGGR.G	2
*	PARC_control1-11112004-04.02509.02509.3	5.5549	0.5704	2832.53	2832.881	1	3391.0	34.3%	1	R.GGGFGGGSGFGGGSGFGGGSGFSGGGFGGGGFGGGR.F	3
*	PARC_control1-11112004-03.01926.01926.2	5.5774	0.4344	2399.67	2400.445	1	2171.9	48.3%	4	G.GSGFGGGSGFGGGSGFSGGGFGGGGFGGGR.F	2
*	PARC_control1-11112004-04.02342.02342.3	6.0389	0.3719	2400.77	2400.445	1	4378.7	44.0%	2	G.GSGFGGGSGFGGGSGFSGGGFGGGGFGGGR.F	3
*	PARC_control1-11112004-03.02916.02916.2	3.0746	0.2928	1848.01	1848.149	1	289.5	50.0%	1	R.PINLEPIFQGYIDSLK.R	2
*	PARC_control1-11112004-03.02326.02326.2	4.9817	0.2879	1460.95	1461.698	1	1572.7	86.4%	5	K.VDLLNQEIEFLK.V	2
	PARC_control1-11112004-04.02815.02815.1	3.2775	0.3082	1329.75	1330.521	6	517.7	59.1%	4	R.NLDLDSIIAEVK.A	1 1 1 1
	PARC_control1-11112004-04.02819.02819.2	5.15	0.3396	1330.13	1330.521	1	1638.6	90.9%	7	R.NLDLDSIIAEVK.A	2 2 2 2
*	PARC_control1-11112004-03.01278.01278.1	1.9369	0.2934	1193.63	1194.33	1	625.4	72.2%	1	K.YEELQVTVGR.H	1
*	PARC_control1-11112004-03.01274.01274.2	3.7379	0.2688	1194.25	1194.33	1	1823.3	94.4%	1	K.YEELQVTVGR.H	2
*	PARC_control1-11112004-03.01264.01264.2	3.4838	0.2956	1330.37	1330.397	1	1403.6	81.8%	1	K.NVQDAIADAEQR.G	2
	PARC_control1-11112004-04.02299.02299.2	4.1574	0.3768	1264.41	1264.464	1	1727.2	90.0%	1	K.LALDVEIATYR.K	2 2 2 2 2 2
*	PARC_control1-11112004-03.01018.01018.2	3.2255	0.2679	2503.15	2502.489	1	327.2	32.1%	1	K.AAFGGSGGRGSSSGGGYSSGSSSYGSGGR.Q	2
*	PARC_control1-11112004-03.00870.00870.2	4.1067	0.5085	2258.95	2258.242	1	562.9	37.0%	1	R.QSGSRGGSGGGGSISGGGYGSGGGSGGR.Y	2
*	PARC_control1-11112004-03.00854.00854.2	4.6489	0.5757	1742.59	1742.716	1	777.6	47.7%	1	R.GGSGGGGSISGGGYGSGGGSGGR.Y	2

Similarities: KERATIN21(3:13)
KERATIN18(3:13)
KERATIN17(3:13)
KERATIN15(1:15)
KERATIN14(1:15)

ORFP:YLL024C

28.3%

639

69470

5.1

SSA2 SGDID:S0003947, Chr XII from 97484-95565, reverse complement

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
	PARC_control1-11112004-04.05347.05347.2	3.3724	0.457	2184.35	2184.336	1	692.9	42.1%	1	K.AVGIDLGTTYSCVAHFSNDR.V	2 2
	PARC_control1-11112004-04.01506.01506.1	1.9836	0.1048	794.58	794.883	1	311.7	66.7%	1	A.NTVFDAK.R	1 1 1 1 1 1 1
	PARC_control1-11112004-03.02238.02238.2	3.5125	0.2778	1551.59	1551.798	2	462.5	61.5%	2	K.NFTPEQISSMVLGK.M	2 2
	PARC_control1-11112004-03.01071.01071.1	2.3748	0.2776	1068.21	1069.156	13	180.6	55.6%	1	K.ETAESYLGAK.V	1 1
	PARC_control1-11112004-03.01871.01871.2	2.9558	0.3091	1660.27	1660.908	1	1058.3	63.3%	1	R.IINEPTAAAIAYGLDK.K	2 2 2 2 2 2
	PARC_control1-11112004-03.01986.01986.1	2.0317	0.3119	1299.75	1300.42	1	512.8	66.7%	1	R.FEELCADLFR.S	1 1 1 1
	PARC_control1-11112004-03.01978.01978.2	3.8838	0.3942	1300.19	1300.42	1	1509.4	88.9%	4	R.FEELCADLFR.S	2 2 2 2
	PARC_control1-11112004-03.01542.01542.2	4.9767	0.0868	1460.45	1460.627	1	1648.5	80.8%	2	K.SQVDEIVLVGGSTR.I	2 2
	PARC_control1-11112004-04.02941.02941.2	6.6103	0.6244	2578.57	2578.792	1	2271.4	58.0%	25	R.SINPDEAVAYGAAVQAAILTGDESSK.T	2 2
	PARC_control1-11112004-04.02954.02954.2	2.6917	0.1563	2264.91	2264.451	2	316.1	29.5%	1	N.PDEAVAYGAAVQAAILTGDESSK.T	2 2
	PARC_control1-11112004-03.03110.03110.2	5.4699	0.4498	2555.81	2557.018	1	930.2	54.2%	4	K.TQDLLLLDVAPLSLGIETAGGVMTK.L	2 2
	PARC_control1-11112004-03.02591.02591.2	5.9157	0.2137	2586.23	2586.817	1	1175.4	54.5%	18	K.SEVFSTYADNQPGVLIQVFEGER.A	2 2
*	PARC_control1-11112004-02.01440.01440.2	3.9618	0.462	1751.55	1751.888	1	1360.4	66.7%	2	K.AEETIAWLDSNTTATK.E	2

Similarities: ORFP:YDL229W(1:12)
ORFP:YNL209W(1:12)
ORFP:YAL005C(10:3)
ORFP:YER103W(5:8)
ORFP:YBL075C(5:8)
GR78_HUMAN(2:11)
GR78_LYCES(1:12)

ORFP:YGL030W

27.6%

105

11415

9.8

RPL30 SGDID:S0002998, Chr VII from 439094-439096,439327-439641

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	PARC_control1-11112004-04.02321.02321.2	3.9152	0.4467	1294.03	1294.624	1	775.1	77.3%	1	K.LIIIAANTPVLR.K	2
*	PARC_control1-11112004-03.01571.01571.2	3.8993	0.3777	1817.57	1817.996	1	1176.5	62.5%	1	K.VYYFQGGNNELGTAVGK.L	2

ORFP:YGR192C

26.2%

332

35747

7.0

TDH3 SGDID:S0003424, Chr VII from 883812-882814, reverse complement

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	PARC_control1-11112004-04.02894.02894.2	5.4712	0.5039	2403.81	2404.638	1	1358.0	56.8%	2	R.DPANLPWGSSNVDIAIDSTGVFK.E	2
	PARC_control1-11112004-03.02046.02046.2	3.8837	0.4759	2207.99	2208.593	1	360.3	42.5%	1	K.VVITAPSSTAPMFVMGVNEEK.Y	2 2
	PARC_control1-11112004-03.01050.01050.2	2.8549	0.36	1375.31	1375.522	5	427.7	53.6%	1	R.TASGNIIPSSTGAAK.A	2 2 2
	PARC_control1-11112004-03.01950.01950.2	2.8935	0.2537	1472.31	1471.734	1	986.5	61.5%	1	R.VPTVDVSVVDLTVK.L	2 2 2
	PARC_control1-11112004-03.01676.01676.2	2.5728	0.3617	1752.79	1753.865	1	562.8	50.0%	1	K.LVSWYDNEYGYSTR.V	2 2

Similarities: ORFP:YJR009C(4:1)
ORFP:YJL052W(2:3)

ORFP:YNL287W

25.6%

935

104831

5.1

SEC21 SGDID:S0005231, Chr XIV from 91992-94799

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	PARC_control1-11112004-03.02710.02710.2	3.7868	0.4811	1911.97	1912.221	1	987.1	52.9%	1	K.ELSGISEDVLMATSSIMK.D	2
*	PARC_control1-11112004-04.02425.02425.2	5.0065	0.5074	1789.09	1789.937	1	2712.4	76.7%	3	R.SLTYVLDESTAFSAER.L	2
*	PARC_control1-11112004-02.01935.01935.2	5.1552	0.4554	1973.93	1973.157	1	1539.0	62.5%	10	K.IVVCNPELESLINDSNR.N	2
*	PARC_control1-11112004-04.02614.02614.2	4.2315	0.3591	1338.29	1338.587	1	1281.5	86.4%	2	R.NISTYAITTLLK.T	2
*	PARC_control1-11112004-04.03921.03921.2	3.3531	0.3452	1959.95	1960.278	1	655.4	52.9%	1	K.NSIVEALIDIVSFVPQSK.E	2
*	PARC_control1-11112004-04.03385.03385.2	4.6125	0.4775	1606.95	1606.857	1	1761.6	84.6%	3	K.NDPTLYESIISLLK.R	2
*	PARC_control1-11112004-04.02471.02471.1	2.0509	0.2485	1306.8	1307.489	1	319.3	59.1%	1	R.ATIALEFIDSAR.N	1
*	PARC_control1-11112004-04.02461.02461.2	4.8689	0.3932	1307.21	1307.489	1	2098.6	81.8%	2	R.ATIALEFIDSAR.N	2
*	PARC_control1-11112004-02.01702.01702.2	3.7528	0.3316	1361.85	1362.522	1	1374.3	90.0%	5	K.YFYDIPSLESK.L	2
*	PARC_control1-11112004-03.02114.02114.2	6.3568	0.6082	2422.99	2423.598	1	2219.5	61.9%	3	K.LSSYISSNTDSFATAFDVNQVR.K	2
*	PARC_control1-11112004-03.02628.02628.2	4.2283	0.3246	2178.55	2178.49	1	976.4	47.2%	1	K.YADELLSIEQIKPFGQLVN.S	2
*	PARC_control1-11112004-03.01927.01927.2	3.546	0.3834	1562.75	1561.775	1	616.0	69.2%	1	R.AISLTEPEAEFVVR.G	2
*	PARC_control1-11112004-03.01830.01830.2	3.8142	0.4114	1597.79	1598.802	1	693.8	76.9%	1	R.LLPSEEAACYVAFK.K	2
*	PARC_control1-11112004-03.02852.02852.2	3.6632	0.3356	2087.45	2086.408	1	1450.4	58.8%	1	K.LDEIVMEGFLNNLTFTTK.E	2
*	PARC_control1-11112004-03.02930.02930.3	6.6744	0.5029	3897.41	3898.052	1	1504.5	28.8%	4	K.EINPDTNEPFDGDEGFQDEYEIDSIFLNAGDYVK.S	3

ORFP:YOR096W

22.1%

190

21622

9.8

RPS7A SGDID:S0005622, Chr XV from 505794-505937,506339-506767

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	PARC_control1-11112004-03.03322.03322.3	4.1145	0.2785	3086.93	3085.478	1	701.6	25.9%	1	K.ILSQAPTELELQVAQAFVELENSSPELK.A	3
*	PARC_control1-11112004-03.02384.02384.2	4.3269	0.4056	1573.55	1573.87	1	837.8	73.1%	1	K.ILEDLVFPTEIVGK.R	2

U	ORFP:YGR214W	6	6	21.8%	252	28024	4.7	RPS0A SGDID:S0003446, Chr VII from 920577-920666,921122-921790
U	ORFP:YLR048W	6	6	21.8%	252	27962	4.7	RPS0B SGDID:S0004038, Chr XII from 242233-242322,242682-243350

Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
PARC_control1-11112004-03.02851.02851.3	5.4474	0.4486	2537.78	2536.847	1	1123.7	34.8%	1	L.PATFDLTPEDAQLLLAANTHLGAR.N	3
PARC_control1-11112004-03.02850.02850.2	2.6003	0.3874	2003.93	2005.282	1	287.1	47.2%	1	D.LTPEDAQLLLAANTHLGAR.N	2
PARC_control1-11112004-03.02855.02855.2	4.6244	0.4746	1790.07	1791.017	1	1874.5	68.8%	1	T.PEDAQLLLAANTHLGAR.N	2
PARC_control1-11112004-03.02127.02127.2	3.581	0.3672	1766.93	1766.048	1	579.5	65.6%	1	R.IIAAIPNPEDVVAISSR.T	2
PARC_control1-11112004-03.02139.02139.1	2.213	0.2838	1283.74	1284.412	4	266.5	45.5%	1	I.PNPEDVVAISSR.T	1
PARC_control1-11112004-03.02664.02664.2	2.7306	0.394	1817.61	1818.1	1	453.8	57.7%	1	R.TQPWSIMPDLYFYR.D	2

U	ORFP:YHL001W	3	9	21.7%	138	15153	10.9	RPL14B SGDID:S0000993, Chr VIII from 104270-104398,104797-105084
U	ORFP:YKL006W	3	9	21.7%	138	15167	10.9	RPL14A SGDID:S0001489, Chr XI from 431544-431672,432071-432358

Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
PARC_control1-11112004-04.02394.02394.2	4.5577	0.3524	1212.83	1213.46	1	1664.1	90.0%	1	K.LAAIVEIIDQK.K	2
PARC_control1-11112004-04.03342.03342.3	4.3116	0.3705	2051.63	2052.468	1	1739.5	44.4%	1	R.QAINLGQVVLTPLTFALPR.G	3
PARC_control1-11112004-04.03337.03337.2	5.1694	0.5359	2051.79	2052.468	1	1054.5	58.3%	7	R.QAINLGQVVLTPLTFALPR.G	2

ORFP:YOR229W

21.2%

467

51951

5.0

WTM2 SGDID:S0005755, Chr XV from 768409-769812

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	PARC_control1-11112004-04.02955.02955.2	2.7013	0.3553	2731.35	2731.069	1	665.0	37.5%	1	K.GTLTTSLLYSQGSDIYEIDTTLPLK.T	2
*	PARC_control1-11112004-03.01434.01434.2	5.7872	0.5396	1877.15	1878.076	1	2807.7	84.4%	1	K.MQYLESSDDSTAIAMSK.N	2
*	PARC_control1-11112004-03.01987.01987.2	5.6626	0.6249	2082.19	2083.318	1	1703.8	65.8%	1	R.PGSLAVSDFDVSTNMDTVVK.S	2
*	PARC_control1-11112004-04.03021.03021.2	5.4097	0.5179	2578.05	2578.879	1	1120.5	47.8%	2	R.LTSFDSSQVTENLFVTGFSTGVIK.L	2
*	PARC_control1-11112004-03.01170.01170.2	3.6971	0.3232	1442.59	1443.606	1	864.3	75.0%	1	R.VAAPEELQGQCLK.F	2

ORFP:YLR432W

21.0%

523

56585

7.4

IMD3 SGDID:S0004424, Chr XII from 1002552-1004123

Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
PARC_control1-11112004-02.01879.01879.2	3.7187	0.2995	2479.17	2479.749	1	555.8	38.6%	3	K.NYENGFINNPIVISPTTTVGEAK.S	2 2 2
PARC_control1-11112004-03.01915.01915.2	3.1918	0.3187	1389.37	1388.519	1	595.3	70.8%	1	R.FGFSGFPVTEDGK.R	2 2
PARC_control1-11112004-04.02863.02863.2	4.1739	0.4537	2095.15	2095.372	1	836.8	50.0%	1	R.DIQFVEDNSLLVQDVMTK.N	2 2 2
PARC_control1-11112004-03.01772.01772.2	2.5943	0.316	1942.29	1942.177	1	717.4	52.8%	1	K.NPVTGAQGITLSEGNEILK.K	2 2 2
PARC_control1-11112004-03.02300.02300.2	4.1241	0.143	1746.23	1746.958	1	1370.6	66.7%	1	K.ETFPDLEIIAGNVATR.E	2 2
PARC_control1-11112004-03.01910.01910.2	5.7	0.5177	2157.65	2158.37	1	1899.3	67.5%	3	R.YFSESDSVLVAQGVSGAVVDK.G	2 2 2

Similarities: ORFP:YHR216W(4:2)
ORFP:YAR073W(3:3)
ORFP:YML056C(3:3)

ORFP:YJR009C

19.3%

332

35847

7.0

TDH2 SGDID:S0003769, Chr X from 454374-453376, reverse complement

Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
PARC_control1-11112004-03.02046.02046.2	3.8837	0.4759	2207.99	2208.593	1	360.3	42.5%	1	K.VVITAPSSTAPMFVMGVNEEK.Y	2 2
PARC_control1-11112004-03.01050.01050.2	2.8549	0.36	1375.31	1375.522	5	427.7	53.6%	1	R.TASGNIIPSSTGAAK.A	2 2 2
PARC_control1-11112004-03.01950.01950.2	2.8935	0.2537	1472.31	1471.734	1	986.5	61.5%	1	R.VPTVDVSVVDLTVK.L	2 2 2
PARC_control1-11112004-03.01676.01676.2	2.5728	0.3617	1752.79	1753.865	1	562.8	50.0%	1	K.LVSWYDNEYGYSTR.V	2 2

Similarities: ORFP:YGR192C(4:0)
ORFP:YJL052W(2:2)

ORFP:YAL005C

19.0%

642

69768

5.1

SSA1 SGDID:S0000004, Chr I from 141433-139505, reverse complement

Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
PARC_control1-11112004-04.01506.01506.1	1.9836	0.1048	794.58	794.883	1	311.7	66.7%	1	S.NTVFDAK.R	1 1 1 1 1 1 1
PARC_control1-11112004-03.02238.02238.2	3.5125	0.2778	1551.59	1551.798	2	462.5	61.5%	2	K.NFTPEQISSMVLGK.M	2 2
PARC_control1-11112004-03.01071.01071.1	2.3748	0.2776	1068.21	1069.156	13	180.6	55.6%	1	K.ETAESYLGAK.V	1 1
PARC_control1-11112004-03.01871.01871.2	2.9558	0.3091	1660.27	1660.908	1	1058.3	63.3%	1	R.IINEPTAAAIAYGLDK.K	2 2 2 2 2 2
PARC_control1-11112004-03.01986.01986.1	2.0317	0.3119	1299.75	1300.42	1	512.8	66.7%	1	R.FEELCADLFR.S	1 1 1 1
PARC_control1-11112004-03.01978.01978.2	3.8838	0.3942	1300.19	1300.42	1	1509.4	88.9%	4	R.FEELCADLFR.S	2 2 2 2
PARC_control1-11112004-03.01542.01542.2	4.9767	0.0868	1460.45	1460.627	1	1648.5	80.8%	2	K.SQVDEIVLVGGSTR.I	2 2
PARC_control1-11112004-04.02941.02941.2	6.6103	0.6244	2578.57	2578.792	1	2271.4	58.0%	25	R.SINPDEAVAYGAAVQAAILTGDESSK.T	2 2
PARC_control1-11112004-04.02954.02954.2	2.6917	0.1563	2264.91	2264.451	2	316.1	29.5%	1	N.PDEAVAYGAAVQAAILTGDESSK.T	2 2
PARC_control1-11112004-03.03110.03110.2	5.4699	0.4498	2555.81	2557.018	1	930.2	54.2%	4	K.TQDLLLLDVAPLSLGIETAGGVMTK.L	2 2

Similarities: ORFP:YDL229W(1:9)
ORFP:YNL209W(1:9)
ORFP:YLL024C(10:0)
ORFP:YER103W(4:6)
ORFP:YBL075C(4:6)
GR78_HUMAN(2:8)
GR78_LYCES(1:9)

U	ORFP:YDL083C	3	6	18.9%	143	15847	10.3	RPS16B SGDID:S0002241, Chr IV from 307788-307765,307332-306925, reverse complement
U	ORFP:YMR143W	3	6	18.9%	143	15847	10.3	RPS16A SGDID:S0004751, Chr XIII from 551927-551950,552495-552902

Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
PARC_control1-11112004-03.02164.02164.2	3.8519	0.358	1637.27	1637.917	1	990.8	64.3%	4	K.VNGSPITLVEPEILR.F	2
PARC_control1-11112004-03.02343.02343.1	2.7256	0.3665	1358.74	1359.649	1	765.2	63.6%	1	K.VYEPLLLVGLDK.F	1
PARC_control1-11112004-03.02338.02338.2	4.0016	0.4039	1358.93	1359.649	1	1231.9	86.4%	1	K.VYEPLLLVGLDK.F	2

KERATIN21

18.8%

357

39219

5.2

no description

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
	PARC_control1-11112004-03.02675.02675.2	3.8614	0.4629	1891.77	1892.122	1	1019.9	75.0%	3	-.QNLEPLFEQYINNLR.R	2 2 2
	PARC_control1-11112004-02.01898.01898.2	3.7177	0.129	1408.91	1408.551	1	1565.9	77.3%	1	K.ADTLTDEINFLR.A	2 2
	PARC_control1-11112004-04.02815.02815.1	3.2775	0.3082	1329.75	1330.521	6	517.7	59.1%	4	R.NLDLDSIIAEVK.A	1 1 1 1
	PARC_control1-11112004-04.02819.02819.2	5.15	0.3396	1330.13	1330.521	1	1638.6	90.9%	7	R.NLDLDSIIAEVK.A	2 2 2 2
	PARC_control1-11112004-04.02299.02299.2	4.1574	0.3768	1264.41	1264.464	1	1727.2	90.0%	1	K.LALDVEIATYR.K	2 2 2 2 2 2
*	PARC_control1-11112004-03.01227.01227.2	4.0251	0.3853	1448.81	1448.616	1	742.7	59.4%	1	R.AIGGGLSSVGGGSSTIK.Y	2

Similarities: KERATIN22(3:3)
KERATIN18(5:1)
KERATIN17(4:2)
KERATIN15(1:5)
KERATIN14(1:5)

SPA1_STAAU

18.7%

524

57320

5.7

owl|P02976| IMMUNOGLOBULIN G BINDING PROTEIN A PRECURSOR (PROTEIN A). - STAPHYLOCOCCUS...

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	PARC_control1-11112004-03.02482.02482.2	5.3025	0.5012	2381.37	2382.61	1	1464.6	65.8%	1	K.DQQSAFYEILNMPNLNEAQR.N	2
*	PARC_control1-11112004-03.02487.02487.3	5.0437	0.3271	2382.29	2382.61	1	1361.9	39.5%	1	K.DQQSAFYEILNMPNLNEAQR.N	3
	PARC_control1-11112004-03.01056.01056.2	2.6699	0.3665	1462.01	1461.525	6	353.3	50.0%	1	K.DDPSQSTNVLGEAK.K	2 2
	PARC_control1-11112004-03.02462.02462.2	4.2621	0.4404	2481.97	2481.699	1	568.6	47.4%	3	K.EQQNAFYEILNMPNLNEEQR.N	2 2
	PARC_control1-11112004-03.02463.02463.3	3.8773	0.2344	2482.01	2481.699	1	1338.3	36.8%	1	K.EQQNAFYEILNMPNLNEEQR.N	3 3
*	PARC_control1-11112004-03.02022.02022.2	3.7079	0.2613	2363.49	2363.587	1	597.2	45.2%	2	R.NGFIQSLKDDPSQSANLLSEAK.K	2
	PARC_control1-11112004-04.02485.02485.2	3.8549	0.33	2348.01	2347.587	1	800.6	50.0%	3	R.NGFIQSLKDDPSQSANLLAEAK.K	2 2

Similarities: SPA2_STAAU(4:3)

KERATIN13

18.0%

643

65494

6.6

no description

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	PARC_control1-11112004-03.02151.02151.2	4.3225	0.3434	1964.75	1965.254	1	988.8	68.8%	3	N.QSLLQPLNVEIDPEIQK.V	2
*	PARC_control1-11112004-02.01660.01660.2	4.4117	0.4681	1477.55	1476.629	1	2178.5	86.4%	7	K.WELLQQVDTSTR.T	2
*	PARC_control1-11112004-02.00743.00743.2	2.8027	0.3708	1125.69	1126.208	1	1111.7	77.8%	1	K.AEAESLYQSK.Y	2
*	PARC_control1-11112004-03.01246.01246.1	2.7796	0.281	1179.78	1180.303	1	611.9	72.2%	2	K.YEELQITAGR.H	1
*	PARC_control1-11112004-03.01247.01247.2	4.0187	0.349	1180.19	1180.303	1	1862.2	88.9%	5	K.YEELQITAGR.H	2
*	PARC_control1-11112004-04.01857.01857.2	3.813	0.4925	1716.93	1717.833	1	1255.9	71.4%	2	K.QISNLQQSISDAEQR.G	2
*	PARC_control1-11112004-03.01222.01222.1	2.6072	0.1584	1141.44	1142.269	1	446.5	68.8%	1	R.DYQELMNTK.L	1
*2	PARC_control1-11112004-04.02473.02473.1	2.8607	0.3321	1277.71	1278.491	2	400.3	70.0%	1	K.LALDLEIATYR.T	1 1 1 1
*2	PARC_control1-11112004-03.02060.02060.2	4.5392	0.3531	1278.49	1278.491	1	2186.9	90.0%	2	K.LALDLEIATYR.T	2 2 2 2
*	PARC_control1-11112004-03.00938.00938.2	6.1245	0.3352	2384.81	2385.298	1	1175.5	41.7%	2	R.GGGGGGYGSGGSSYGSGGGSYGSGGGGGGGR.G	2
*	PARC_control1-11112004-03.00942.00942.2	2.7121	0.2703	2442.51	2442.35	8	189.9	21.0%	1	R.GGGGGGYGSGGSSYGSGGGSYGSGGGGGGGRG.S	2

Similarities: KERATIN20(2:9)
KERATIN16(2:9)
KERATIN19(2:9)

ORFP:YJR123W

17.3%

225

25039

8.6

RPS5 SGDID:S0003884, Chr X from 651596-652273

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	PARC_control1-11112004-03.01690.01690.2	3.4617	0.3558	1265.29	1265.409	1	1805.6	85.0%	1	K.DASLVDYVQVR.Q	2
*	PARC_control1-11112004-04.02442.02442.2	5.5582	0.3865	1340.09	1340.609	1	2884.2	87.5%	2	R.VNQAIALLTIGAR.E	2
*	PARC_control1-11112004-03.02826.02826.2	4.8088	0.2251	1587.43	1587.811	1	2428.5	78.6%	3	K.TIAETLAEELINAAK.G	2

ORFP:YGL016W

17.0%

1081

123531

5.0

KAP122 SGDID:S0002984, Chr VII from 461669-464914

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	PARC_control1-11112004-03.02492.02492.2	3.8706	0.4669	1643.49	1643.753	1	994.3	66.7%	1	R.GENDYETLWNVFR.S	2
*	PARC_control1-11112004-03.02159.02159.2	5.4084	0.5308	2701.27	2701.949	1	2047.6	56.8%	1	K.LFTNIQAADNGQVQDEYIQEYIK.V	2
*	PARC_control1-11112004-03.01746.01746.2	5.2623	0.5501	2130.69	2131.214	1	1869.6	70.6%	5	R.IIEEEGESTSVNEFEDFR.N	2
*	PARC_control1-11112004-04.02901.02901.2	4.6448	0.5039	2352.41	2352.608	1	944.8	52.5%	1	K.FFNQNVISVFQTGFQTSASTK.V	2
*	PARC_control1-11112004-04.03026.03026.2	4.7593	0.3762	1473.25	1473.709	1	1474.3	76.9%	2	R.TSTTLIGTLAGYFK.Q	2
*	PARC_control1-11112004-03.01290.01290.2	2.5705	0.1839	2094.15	2094.252	1	847.8	50.0%	1	R.SIGYVVQCQVSNGPEEQAK.Y	2
*	PARC_control1-11112004-03.02638.02638.2	5.1466	0.5491	1940.69	1941.15	1	1956.8	76.7%	16	R.LSEFQSFWSSDPLQIR.S	2
*	PARC_control1-11112004-04.02801.02801.2	4.985	0.3169	1509.03	1507.736	1	2126.9	80.8%	1	K.NSAFVEIGCLIVGK.G	2
*	PARC_control1-11112004-04.02707.02707.2	3.1133	0.3552	1393.85	1393.632	1	1032.4	66.7%	1	N.SAFVEIGCLIVGK.G	2
*	PARC_control1-11112004-03.02054.02054.2	3.5254	0.3194	1463.49	1463.673	1	628.3	79.2%	1	K.GLNLPDGEPYFLK.Y	2
*	PARC_control1-11112004-04.02971.02971.2	4.6948	0.5113	1503.59	1503.774	1	2138.2	86.4%	1	K.YNMSEVMNFVLR.H	2
*	PARC_control1-11112004-01.03390.03390.2	4.8954	0.2828	2421.79	2421.681	1	666.7	57.5%	5	R.AAGNVILQWWLDCTTLPNYQG.-	2

ORFP:YML127W

17.0%

581

65218

7.8

RSC9 SGDID:S0004596, Chr XIII from 17065-18810

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	PARC_control1-11112004-04.02987.02987.1	2.522	0.2646	1156.94	1157.439	5	554.7	66.7%	1	R.TLPDLLPLFK.T	1
*	PARC_control1-11112004-03.01648.01648.2	4.0234	0.416	1544.73	1544.745	1	1294.1	73.1%	1	R.NLAQDTDSVQILVK.D	2
*	PARC_control1-11112004-04.03173.03173.2	3.5339	0.3694	1805.97	1806.025	1	591.1	53.6%	3	K.EPPNLSEDLFQQLFK.L	2
*	PARC_control1-11112004-03.02504.02504.2	5.3369	0.5301	2302.51	2301.493	1	2781.5	79.4%	1	R.CCFEPVQEAEFTQISLWR.S	2
*	PARC_control1-11112004-03.02080.02080.2	5.637	0.445	2116.37	2117.367	1	1523.7	55.0%	3	K.NVSNAFNNAAAIVITDPVTGK.K	2
*	PARC_control1-11112004-01.03367.03367.2	3.6883	0.5199	2249.49	2249.581	1	986.0	50.0%	1	K.LADIPPLTLALSEYMENTSGL.-	2

U	ORFP:YBR031W	5	9	16.9%	362	39092	10.6	RPL4A SGDID:S0000235, Chr II from 300125-301213
U	ORFP:YDR012W	5	9	16.9%	362	39062	10.6	RPL4B SGDID:S0002419, Chr IV from 471849-472937

Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
PARC_control1-11112004-03.02828.02828.2	3.4258	0.19	1822.27	1821.127	3	951.4	47.2%	2	R.YATASAIAATAVASLVLAR.G	2
PARC_control1-11112004-03.02547.02547.2	5.2974	0.5094	1883.69	1882.205	1	1065.3	75.0%	4	K.IPEIPLVVSTDLESIQK.T	2
PARC_control1-11112004-04.02599.02599.1	2.1704	0.12	1312.48	1313.539	21	319.3	45.0%	1	R.FVIWTEAAFTK.L	1
PARC_control1-11112004-04.02590.02590.2	3.2252	0.1515	1313.03	1313.539	1	1377.8	85.0%	1	R.FVIWTEAAFTK.L	2
PARC_control1-11112004-02.01066.01066.2	3.1958	0.2754	1508.23	1507.64	1	870.5	65.4%	1	K.LDQVWGSETVASSK.V	2

ORFP:YGL123W

15.7%

254

27450

10.4

RPS2 SGDID:S0003091, Chr VII from 277621-278385

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	PARC_control1-11112004-03.01850.01850.2	4.4638	0.3976	1836.27	1836.052	1	1540.3	68.8%	1	K.LLQLAGVEDVYTQSNGK.T	2
*	PARC_control1-11112004-03.02451.02451.2	4.0318	0.3605	2558.91	2558.847	2	312.4	34.1%	1	N.LWAEQPLPVSPLDIYSDEASAQK.K	2

ORFP:YHR216W

15.5%

523

56530

8.5

IMD2 SGDID:S0001259, Chr VIII from 554392-555963

Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
PARC_control1-11112004-02.01879.01879.2	3.7187	0.2995	2479.17	2479.749	1	555.8	38.6%	3	K.NYENGFINNPIVISPTTTVGEAK.S	2 2 2
PARC_control1-11112004-04.02863.02863.2	4.1739	0.4537	2095.15	2095.372	1	836.8	50.0%	1	R.DIQFVEDNSLLVQDVMTK.N	2 2 2
PARC_control1-11112004-03.01772.01772.2	2.5943	0.316	1942.29	1942.177	1	717.4	52.8%	1	K.NPVTGAQGITLSEGNEILK.K	2 2 2
PARC_control1-11112004-03.01910.01910.2	5.7	0.5177	2157.65	2158.37	1	1899.3	67.5%	3	R.YFSESDSVLVAQGVSGAVVDK.G	2 2 2

Similarities: ORFP:YLR432W(4:0)
ORFP:YAR073W(3:1)
ORFP:YML056C(1:3)

ORFP:YPR072W

15.4%

560

65855

5.3

NOT5 SGDID:S0006276, Chr XVI from 690102-691784

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	PARC_control1-11112004-04.02639.02639.2	5.4298	0.4247	1874.51	1874.067	1	1581.0	82.1%	8	R.DQVLFIHDCLDELQK.Q	2
*	PARC_control1-11112004-02.00820.00820.2	2.8778	0.2044	2025.69	2025.05	1	1536.7	63.3%	1	K.QLEQYEAQENEEQTER.H	2
*	PARC_control1-11112004-03.01004.01004.2	2.6762	0.1566	1306.29	1306.375	1	656.8	63.6%	1	K.EGNNQTSLSSIR.S	2
*	PARC_control1-11112004-04.02570.02570.2	2.9265	0.3059	2545.89	2545.768	1	421.3	35.7%	1	K.TIQHDVETNAAFQNPLFNDELK.Y	2
*	PARC_control1-11112004-02.01910.01910.2	5.0402	0.4863	2486.07	2486.654	1	752.1	57.5%	39	R.FVYPYDVPLNLTNNENDTDNK.F	2

ORFP:YFR037C

15.3%

557

63168

5.4

RSC8 SGDID:S0001933, Chr VI from 229173-227500, reverse complement

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	PARC_control1-11112004-04.02581.02581.2	4.8855	0.4189	1526.19	1526.773	1	1036.9	79.2%	3	R.LSPYEYLTITAVR.R	2
*	PARC_control1-11112004-03.02039.02039.2	3.6833	0.3508	1375.79	1375.57	1	761.2	85.0%	2	K.WGLINYQIDPR.T	2
*	PARC_control1-11112004-03.02191.02191.2	3.8356	0.3697	1480.43	1480.704	1	720.8	86.4%	2	K.FLSLPIEDNYIR.E	2
*	PARC_control1-11112004-03.02434.02434.2	5.2467	0.4848	2050.29	2050.254	1	1928.6	64.7%	1	K.LMECVNDAVQTLLQGDDK.L	2
*	PARC_control1-11112004-04.02630.02630.2	5.5975	0.4125	1663.45	1663.908	1	3396.5	88.5%	4	K.YIEESQAIIQELVK.L	2
*	PARC_control1-11112004-04.05345.05345.2	3.7011	0.4243	1870.07	1871.181	1	1072.3	59.4%	1	K.LVLISEQVDSGIQLVEK.D	2

ORFP:YAR073W

14.9%

403

44386

8.2

IMD1 SGDID:S0000095, Chr I from 227733-228944

Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
PARC_control1-11112004-02.01879.01879.2	3.7187	0.2995	2479.17	2479.749	1	555.8	38.6%	3	K.NYENGFINNPIVISPTTTVGEAK.S	2 2 2
PARC_control1-11112004-04.02863.02863.2	4.1739	0.4537	2095.15	2095.372	1	836.8	50.0%	1	R.DIQFVEDNSLLVQDVMTK.N	2 2 2
PARC_control1-11112004-03.01772.01772.2	2.5943	0.316	1942.29	1942.177	1	717.4	52.8%	1	K.NPVTGAQGITLSEGNEILK.K	2 2 2

Similarities: ORFP:YLR432W(3:0)
ORFP:YHR216W(3:0)

ORFP:YML056C

13.9%

524

56394

8.2

IMD4 SGDID:S0004520, Chr XIII from 164176-163717,163308-162194, reverse complement

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	PARC_control1-11112004-03.02371.02371.2	3.9651	0.1813	2481.87	2481.866	2	345.8	31.8%	1	K.MFENGFINSPIVISPTTTVGEVK.V	2
	PARC_control1-11112004-03.01915.01915.2	3.1918	0.3187	1389.37	1388.519	1	595.3	70.8%	1	K.FGFSGFPVTEDGK.C	2 2
	PARC_control1-11112004-03.02300.02300.2	4.1241	0.143	1746.23	1746.958	1	1370.6	66.7%	1	K.ETFPDLEIIAGNVATR.E	2 2
	PARC_control1-11112004-03.01910.01910.2	5.7	0.5177	2157.65	2158.37	1	1899.3	67.5%	3	R.YFSESDSVLVAQGVSGAVVDK.G	2 2 2

Similarities: ORFP:YLR432W(3:1)
ORFP:YHR216W(1:3)

ORFP:YOR310C

13.5%

511

56956

8.9

NOP58 SGDID:S0005837, Chr XV from 898353-896818, reverse complement

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	PARC_control1-11112004-03.02260.02260.2	5.4895	0.4415	1879.13	1879.034	1	2090.9	70.6%	1	K.FNSAANALEEANSIIEGK.V	2
*	PARC_control1-11112004-03.02179.02179.2	3.0255	0.3686	1921.33	1922.157	1	474.1	50.0%	1	K.EYLPELLPGMSDNDLSK.M	2
*	PARC_control1-11112004-03.02050.02050.2	4.281	0.2918	1960.77	1961.087	1	558.6	53.1%	3	K.ASETDLSEILPEEIEER.V	2
*	PARC_control1-11112004-04.03334.03334.2	4.6123	0.5256	1722.67	1723.026	1	1482.8	71.9%	2	K.AIAPNLTQLVGELVGAR.L	2

U	ORFP:YGL076C	2	2	13.1%	244	27638	10.1	RPL7A SGDID:S0003044, Chr VII from 365997-365987,365527-365434,364965-364336, reverse complement
U	ORFP:YPL198W	2	2	13.1%	244	27696	10.1	RPL7B SGDID:S0006119, Chr XVI from 173151-173161,173571-173664,174072-174701

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
	PARC_control1-11112004-03.01980.01980.2	4.1641	0.3924	1992.59	1993.266	1	943.8	56.2%	1	K.LIEPYVAYGYPSYSTIR.Q	2
	PARC_control1-11112004-03.01711.01711.2	4.2745	0.2385	1554.37	1554.784	1	1317.5	67.9%	1	R.VPLSDNAIIEANLGK.Y	2

ORFP:YLR340W

12.5%

312

33717

4.8

RPP0 SGDID:S0004332, Chr XII from 805887-806825

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	PARC_control1-11112004-03.02196.02196.2	3.1032	0.1635	1268.23	1268.409	2	1075.9	80.0%	1	R.GFLSDLPDFEK.L	2
*	PARC_control1-11112004-03.02162.02162.2	4.452	0.4876	1766.55	1766.004	1	926.1	66.7%	1	K.GNVGFVFTNEPLTEIK.N	2
*	PARC_control1-11112004-03.02084.02084.2	3.8691	0.3352	1296.05	1296.509	1	1025.3	86.4%	1	K.TSFFQALGVPTK.I	2

KERATIN18

11.9%

562

59822

8.0

no description

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	PARC_control1-11112004-03.01302.01302.2	2.8659	0.422	1599.73	1599.707	1	534.1	46.9%	1	R.ISIGGGSCAISGGYGSR.A	2
	PARC_control1-11112004-03.02675.02675.2	3.8614	0.4629	1891.77	1892.122	1	1019.9	75.0%	3	R.QNLEPLFEQYINNLR.R	2 2 2
	PARC_control1-11112004-02.01898.01898.2	3.7177	0.129	1408.91	1408.551	1	1565.9	77.3%	1	K.ADTLTDEINFLR.A	2 2
	PARC_control1-11112004-04.02815.02815.1	3.2775	0.3082	1329.75	1330.521	6	517.7	59.1%	4	R.NLDLDSIIAEVK.A	1 1 1 1
	PARC_control1-11112004-04.02819.02819.2	5.15	0.3396	1330.13	1330.521	1	1638.6	90.9%	7	R.NLDLDSIIAEVK.A	2 2 2 2
	PARC_control1-11112004-04.02299.02299.2	4.1574	0.3768	1264.41	1264.464	1	1727.2	90.0%	1	K.LALDVEIATYR.K	2 2 2 2 2 2

Similarities: KERATIN22(3:3)
KERATIN21(5:1)
KERATIN17(4:2)
KERATIN15(1:5)
KERATIN14(1:5)

ORFP:YPL106C

11.8%

693

77367

5.2

SSE1 SGDID:S0006027, Chr XVI from 352270-350189, reverse complement

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	PARC_control1-11112004-03.01563.01563.2	4.136	0.4562	1314.49	1315.469	1	1397.7	72.7%	2	R.GIDIVVNEVSNR.S	2
*	PARC_control1-11112004-03.01931.01931.2	4.6584	0.3882	1654.69	1654.904	1	2211.6	76.7%	2	R.IVNDVTAAGVSYGIFK.T	2
*	PARC_control1-11112004-04.02823.02823.2	5.2944	0.4929	1837.63	1837.037	1	1845.5	62.5%	2	K.LSAEEVDFVEIIGGTTR.I	2
*	PARC_control1-11112004-03.02171.02171.2	4.2539	0.273	1415.33	1415.586	1	1758.5	85.0%	1	K.NTLEEYIYTLR.G	2
*	PARC_control1-11112004-02.01882.01882.2	4.3172	0.5246	1702.43	1702.814	1	1427.8	76.9%	4	K.AEEWLYDEGFDSIK.A	2
	PARC_control1-11112004-02.01823.01823.2	4.4422	0.4266	1377.99	1378.568	1	1966.7	86.4%	6	K.YEELASLGNIIR.G	2

ORFP:YLR197W

11.5%

504

56864

8.9

SIK1 SGDID:S0004187, Chr XII from 546099-547613

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	PARC_control1-11112004-03.02212.02212.2	4.8548	0.4961	2219.89	2218.379	1	1573.6	54.8%	1	K.GAAEALENANDISEGLVSESLK.A	2
*	PARC_control1-11112004-03.02922.02922.2	4.0304	0.5143	2311.77	2312.504	1	755.9	52.8%	2	K.EEFPYVDCISNELAQDLIR.G	2
*	PARC_control1-11112004-02.01774.01774.2	4.3186	0.3859	1898.39	1899.064	1	658.7	59.4%	1	R.IDNYSEEPSNVFGSVLK.K	2

SPA2_STAAU

11.0%

508

55439

5.7

owl|P38507| IMMUNOGLOBULIN G BINDING PROTEIN A PRECURSOR (PROTEIN A). - STAPHYLOCOCCUS...

Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
PARC_control1-11112004-03.01056.01056.2	2.6699	0.3665	1462.01	1461.525	6	353.3	50.0%	1	K.DDPSQSTNVLGEAK.K	2 2
PARC_control1-11112004-03.02462.02462.2	4.2621	0.4404	2481.97	2481.699	1	568.6	47.4%	3	K.EQQNAFYEILNMPNLNEEQR.N	2 2
PARC_control1-11112004-03.02463.02463.3	3.8773	0.2344	2482.01	2481.699	1	1338.3	36.8%	1	K.EQQNAFYEILNMPNLNEEQR.N	3 3
PARC_control1-11112004-04.02485.02485.2	3.8549	0.33	2348.01	2347.587	1	800.6	50.0%	6	R.NGFIQSLKDDPSQSANLLAEAK.K	2 2

Similarities: SPA1_STAAU(4:0)

ORFP:YCR052W

10.4%

483

54165

4.9

RSC6 SGDID:S0000648, Chr III from 214986-216437

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	PARC_control1-11112004-03.03107.03107.2	2.601	0.2994	1996.91	1998.411	12	196.8	38.2%	1	K.LVSPLPPIILDYTIDLSK.D	2
*	PARC_control1-11112004-03.01750.01750.2	3.8348	0.3731	2110.59	2111.232	1	956.0	52.9%	2	K.QNELVLQGDQYFNEDAAR.T	2
*	PARC_control1-11112004-04.02618.02618.2	3.404	0.3826	1539.77	1539.79	1	1056.4	57.7%	1	R.SLMGNISLLYSQGR.L	2

ORFP:YGR159C

10.4%

414

44535

4.9

NSR1 SGDID:S0003391, Chr VII from 807658-806414, reverse complement

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	PARC_control1-11112004-03.02306.02306.2	3.7827	0.1973	1392.03	1392.551	1	1310.5	85.0%	1	R.LSWSIDDEWLK.K	2
*	PARC_control1-11112004-03.02424.02424.2	4.3269	0.3763	2503.31	2501.668	1	483.2	38.6%	2	K.FGDTPSEPSDTLFLGNLSFNADR.D	2
*	PARC_control1-11112004-03.02298.02298.1	2.7262	0.2969	1053.65	1054.231	1	940.4	75.0%	2	R.DAIFELFAK.H	1

KERATIN17

10.3%

590

62461

8.1

no description

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	PARC_control1-11112004-03.01426.01426.2	2.6405	0.1816	1766.29	1765.795	26	245.7	29.5%	1	A.GGGYGFGGGAGSGFGFGGGAGGG.F	2
	PARC_control1-11112004-03.02675.02675.2	3.8614	0.4629	1891.77	1892.122	1	1019.9	75.0%	3	R.QNLEPLFEQYINNLR.R	2 2 2
	PARC_control1-11112004-04.02815.02815.1	3.2775	0.3082	1329.75	1330.521	6	517.7	59.1%	4	R.NLDLDSIIAEVK.A	1 1 1 1
	PARC_control1-11112004-04.02819.02819.2	5.15	0.3396	1330.13	1330.521	1	1638.6	90.9%	7	R.NLDLDSIIAEVK.A	2 2 2 2
	PARC_control1-11112004-04.02299.02299.2	4.1574	0.3768	1264.41	1264.464	1	1727.2	90.0%	1	K.LALDVEIATYR.K	2 2 2 2 2 2

Similarities: KERATIN22(3:2)
KERATIN21(4:1)
KERATIN18(4:1)
KERATIN15(1:4)
KERATIN14(1:4)

ORFP:YLR321C

10.3%

426

48777

5.2

SFH1 SGDID:S0004313, Chr XII from 777864-776584, reverse complement

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	PARC_control1-11112004-03.02088.02088.2	4.7524	0.526	2051.55	2051.279	1	597.7	61.8%	4	R.LTNEDDGIPIFTMAQQTR.Q	2
*	PARC_control1-11112004-04.02546.02546.2	3.4534	0.3739	1718.13	1717.835	1	1467.6	70.8%	1	R.FFEDNFQWNLNDK.S	2
*	PARC_control1-11112004-03.02131.02131.2	4.8006	0.3402	1421.55	1421.637	1	1377.4	83.3%	2	R.FATSIVQDLGLTR.E	2

ORFP:YOR204W

9.6%

604

65553

7.8

DED1 SGDID:S0005730, Chr XV from 722911-724725

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	PARC_control1-11112004-03.02926.02926.2	4.1911	0.4848	2538.23	2538.898	1	636.1	47.7%	1	K.DVPEPITEFTSPPLDGLLLENIK.L	2
*	PARC_control1-11112004-03.01875.01875.2	4.6787	0.3862	1372.35	1372.608	1	2017.2	67.9%	2	R.SGAATLLVATAVAAR.G	2
*	PARC_control1-11112004-03.01983.01983.2	4.159	0.5037	2056.17	2056.24	1	557.5	39.5%	2	R.AGNTGLATAFFNSENSNIVK.G	2

ORFP:YLR360W

9.1%

439

50860

9.0

VPS38 SGDID:S0004352, Chr XII from 846102-847421

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	PARC_control1-11112004-03.02250.02250.2	3.3954	0.0988	2217.69	2218.552	29	267.1	31.0%	3	T.VLITGTNAPVLDLIDGSYTLAA.E	2
*	PARC_control1-11112004-04.03094.03094.2	3.0428	0.1584	2188.53	2188.594	3	471.7	38.2%	1	L.EKEVLQRKKSKKNIEMAQ.L	2

ORFP:YER103W

8.7%

642

69651

5.1

SSA4 SGDID:S0000905, Chr V from 364585-366513

Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
PARC_control1-11112004-04.01506.01506.1	1.9836	0.1048	794.58	794.883	1	311.7	66.7%	1	H.NTVFDAK.R	1 1 1 1 1 1 1
PARC_control1-11112004-03.01871.01871.2	2.9558	0.3091	1660.27	1660.908	1	1058.3	63.3%	1	R.IINEPTAAAIAYGLDK.K	2 2 2 2 2 2
PARC_control1-11112004-03.01986.01986.1	2.0317	0.3119	1299.75	1300.42	1	512.8	66.7%	1	R.FEELCADLFR.S	1 1 1 1
PARC_control1-11112004-03.01978.01978.2	3.8838	0.3942	1300.19	1300.42	1	1509.4	88.9%	4	R.FEELCADLFR.S	2 2 2 2
PARC_control1-11112004-03.02591.02591.2	5.9157	0.2137	2586.23	2586.817	1	1175.4	54.5%	18	K.SEVFSTYADNQPGVLIQVFEGER.T	2 2

Similarities: ORFP:YDL229W(1:4)
ORFP:YNL209W(1:4)
ORFP:YLL024C(5:0)
ORFP:YAL005C(4:1)
ORFP:YBL075C(4:1)
GR78_HUMAN(2:3)
GR78_LYCES(1:4)

ORFP:YJL052W

8.7%

332

35750

8.3

TDH1 SGDID:S0003588, Chr X from 337967-338965

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
	PARC_control1-11112004-03.01050.01050.2	2.8549	0.36	1375.31	1375.522	5	427.7	53.6%	1	R.TASGNIIPSSTGAAK.A	2 2 2
	PARC_control1-11112004-03.01950.01950.2	2.8935	0.2537	1472.31	1471.734	1	986.5	61.5%	1	R.VPTVDVSVVDLTVK.L	2 2 2

Similarities: ORFP:YGR192C(2:0)
ORFP:YJR009C(2:0)

KERATIN05

8.5%

471

51531

5.2

no description

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
	PARC_control1-11112004-03.01166.01166.2	4.659	0.3657	1302.03	1302.424	1	2117.5	86.4%	1	R.ALEEANADLEVK.I	2 2
*	PARC_control1-11112004-03.02111.02111.2	4.6133	0.4067	2054.83	2055.339	1	2263.6	63.9%	1	K.ILTATVDNANVLLQIDNAR.L	2
*	PARC_control1-11112004-02.01730.01730.2	3.5786	0.3613	1173.27	1173.267	1	1175.7	81.2%	1	K.DAEEWFFTK.T	2
*	PARC_control1-11112004-02.01726.01726.1	2.4053	0.2215	1173.72	1173.267	1	532.0	68.8%	1	K.DAEEWFFTK.T	1

Similarities: KERATIN07(1:3)

U	ORFP:YLR448W	2	3	8.5%	176	19986	10.1	RPL6B SGDID:S0004440, Chr XII from 1028848-1028862,1029247-1029762
U	ORFP:YML073C	2	3	8.5%	176	19961	10.1	RPL6A SGDID:S0004538, Chr XIII from 124172-124158,123742-123227, reverse complement

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
	PARC_control1-11112004-04.03201.03201.2	3.9712	0.4529	1480.37	1480.834	1	952.5	78.6%	2	R.ASLVPGTVLILLAGR.F	2
	PARC_control1-11112004-04.03178.03178.1	2.0481	0.2871	1109.83	1110.385	9	260.9	45.0%	1	V.PGTVLILLAGR.F	1

ORFP:YER165W

8.3%

577

64344

6.0

PAB1 SGDID:S0000967, Chr V from 510368-512101

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	PARC_control1-11112004-04.03217.03217.2	3.9477	0.4221	1764.67	1763.985	1	893.5	60.0%	1	K.ALYDTFSVFGDILSSK.I	2
*	PARC_control1-11112004-02.01831.01831.2	4.387	0.4532	2014.37	2015.141	1	1324.4	65.6%	2	K.NINSETTDEQFQELFAK.F	2
*	PARC_control1-11112004-03.02024.02024.2	3.0644	0.377	1676.99	1677.817	1	870.2	57.1%	1	K.GFGFVCFSTPEEATK.A	2

ORFP:YBL075C

8.2%

649

70547

5.2

SSA3 SGDID:S0000171, Chr II from 86443-84494, reverse complement

Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
PARC_control1-11112004-04.05347.05347.2	3.3724	0.457	2184.35	2184.336	1	692.9	42.1%	1	R.AVGIDLGTTYSCVAHFSNDR.V	2 2
PARC_control1-11112004-04.01506.01506.1	1.9836	0.1048	794.58	794.883	1	311.7	66.7%	1	H.NTVFDAK.R	1 1 1 1 1 1 1
PARC_control1-11112004-03.01871.01871.2	2.9558	0.3091	1660.27	1660.908	1	1058.3	63.3%	1	R.IINEPTAAAIAYGLDK.K	2 2 2 2 2 2
PARC_control1-11112004-03.01986.01986.1	2.0317	0.3119	1299.75	1300.42	1	512.8	66.7%	1	R.FEELCADLFR.S	1 1 1 1
PARC_control1-11112004-03.01978.01978.2	3.8838	0.3942	1300.19	1300.42	1	1509.4	88.9%	4	R.FEELCADLFR.S	2 2 2 2

Similarities: ORFP:YDL229W(1:4)
ORFP:YNL209W(1:4)
ORFP:YLL024C(5:0)
ORFP:YAL005C(4:1)
ORFP:YER103W(4:1)
GR78_HUMAN(2:3)
GR78_LYCES(1:4)

U	GR78_HUMAN	4	5	7.8%	653	72116	5.1	owl\|P11021\| 78 KD GLUCOSE REGULATED PROTEIN PRECURSOR (GRP 78) (IMMUNOGLOBULIN...
U	GR78_RAT	4	5	7.8%	654	72347	5.2	owl\|P06761\| 78 KD GLUCOSE REGULATED PROTEIN PRECURSOR (GRP 78) (IMMUNOGLOBULIN...
U	GR78_MOUSE	4	5	7.8%	655	72421	5.2	owl\|P20029\| 78 KD GLUCOSE REGULATED PROTEIN PRECURSOR (GRP 78) (IMMUNOGLOBULIN...
U	GR78_MESAU	4	5	7.8%	654	72379	5.2	owl\|P07823\| 78 KD GLUCOSE REGULATED PROTEIN PRECURSOR (GRP 78) (IMMUNOGLOBULIN...

Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
PARC_control1-11112004-04.01506.01506.1	1.9836	0.1048	794.58	794.883	1	311.7	66.7%	1	E.NTVFDAK.R	1 1 1 1 1 1 1
PARC_control1-11112004-01.01695.01695.1	2.5265	0.2137	1081.71	1082.161	3	291.7	68.8%	2	V.PAYFNDAQR.Q	1 1 1 1 1
PARC_control1-11112004-03.01871.01871.2	2.9558	0.3091	1660.27	1660.908	1	1058.3	63.3%	1	R.IINEPTAAAIAYGLDK.R	2 2 2 2 2 2
PARC_control1-11112004-02.02154.02154.2	2.5092	0.0929	2078.97	2079.36	6	441.0	38.9%	1	I.PPAPRGVPQIEVTFEIDVN.G	2

Similarities: ORFP:YDL229W(2:2)
ORFP:YNL209W(2:2)
ORFP:YLL024C(2:2)
ORFP:YAL005C(2:2)
ORFP:YER103W(2:2)
ORFP:YBL075C(2:2)
GR78_YEAST(1:3)
GR78_LYCES(2:2)

ORFP:YPR034W

7.8%

477

53810

5.5

ARP7 SGDID:S0006238, Chr XVI from 639520-640953

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	PARC_control1-11112004-03.02404.02404.2	4.0452	0.3948	2323.67	2324.645	1	800.9	52.5%	1	R.TVAGFSNVELPQCIIPSSYIK.R	2
*	PARC_control1-11112004-04.03246.03246.2	4.9116	0.4739	1989.19	1990.179	1	2613.0	73.3%	1	R.STDVWYEASTWIQQFK.S	2

KERATIN20

7.5%

483

53748

5.4

no description

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	PARC_control1-11112004-02.03387.03387.2	2.7984	0.2516	2265.93	2268.547	1	434.2	37.5%	2	G.LGGGYGGASGMGGITAVTVNQSLLS.P	2
2	PARC_control1-11112004-04.02473.02473.1	2.8607	0.3321	1277.71	1278.491	2	400.3	70.0%	1	K.LALDIEIATYR.K	1 1 1 1
2	PARC_control1-11112004-03.02060.02060.2	4.5392	0.3531	1278.49	1278.491	1	2186.9	90.0%	2	K.LALDIEIATYR.K	2 2 2 2

Similarities: KERATIN13(2:1)
KERATIN16(2:1)
KERATIN19(2:1)

INT-STD1

7.2%

607

69271

6.1

BSA

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	PARC_control1-11112004-02.01922.01922.2	3.467	0.5254	1956.09	1957.144	1	539.1	61.8%	2	K.DAIPENLPPLTADFAEDK.D	2
*	PARC_control1-11112004-04.02898.02898.2	4.6802	0.4122	1569.15	1568.726	1	2097.1	79.2%	1	K.DAFLGSFLYEYSR.R	2
*	PARC_control1-11112004-03.01939.01939.2	4.4933	0.4954	1480.59	1480.707	1	1795.8	79.2%	2	K.LGEYGFQNALIVR.Y	2

KERATIN07

6.6%

473

50915

5.5

no description

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
	PARC_control1-11112004-03.01166.01166.2	4.659	0.3657	1302.03	1302.424	1	2117.5	86.4%	1	R.ALEEANADLEVK.I	2 2
*	PARC_control1-11112004-03.01982.01982.2	5.3331	0.4845	2064.75	2065.378	1	1133.0	61.1%	2	K.IIAATIENAQPILQIDNAR.L	2

Similarities: KERATIN05(1:1)

ORFP:YKL182W

6.4%

2051

228689

5.9

FAS1 SGDID:S0001665, Chr XI from 100672-106827

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	PARC_control1-11112004-04.02769.02769.2	4.9955	0.4787	2043.11	2042.386	1	1360.1	63.9%	3	K.NLVVSGPPQSLYGLNLTLR.K	2
*	PARC_control1-11112004-03.02174.02174.2	4.3783	0.4517	1855.43	1855.011	1	777.2	70.0%	2	K.DIQIPVYDTFDGSDLR.V	2
*	PARC_control1-11112004-02.01920.01920.2	3.0549	0.2734	1353.57	1353.514	9	658.3	70.0%	2	K.EFDETIFNLPK.N	2
*	PARC_control1-11112004-03.02724.02724.2	3.7995	0.4781	1777.39	1777.974	1	1309.6	76.9%	2	K.LWIDEPFNLDFDPR.D	2
*	PARC_control1-11112004-03.02596.02596.2	4.4949	0.3865	1927.65	1928.062	1	972.7	64.3%	1	K.EWFQLDDEDFDLLNK.T	2
*	PARC_control1-11112004-03.02507.02507.2	3.844	0.4346	2773.99	2775.087	1	402.7	37.5%	1	K.VNLENPIPIAVLDSYTPSTNEPYAR.V	2
*	PARC_control1-11112004-03.02495.02495.3	3.6063	0.194	2774.57	2775.087	1	1075.8	31.2%	1	K.VNLENPIPIAVLDSYTPSTNEPYAR.V	3
*	PARC_control1-11112004-03.02106.02106.2	5.0872	0.5171	1797.49	1798.006	1	2043.0	70.0%	2	R.VAASFSQEALQYVVER.V	2
*	PARC_control1-11112004-03.02067.02067.2	4.7242	0.5573	1904.37	1905.068	1	1518.3	76.7%	1	K.EYFQDVYDLTGSEPIK.E	2

ORFP:YPL093W

6.0%

647

74410

8.8

NOG1 SGDID:S0006014, Chr XVI from 370973-372916

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	PARC_control1-11112004-03.02919.02919.2	3.4585	0.4684	1950.27	1950.243	1	599.0	58.8%	1	K.DIPTVAPANDLLDIVLNR.T	2
*	PARC_control1-11112004-03.01588.01588.2	2.9588	0.3084	2111.67	2111.227	1	1904.8	60.0%	1	R.GSDVVFGDQDALTASTENGVK.L	2

ORFP:YBR163W

5.8%

585

67570

7.2

DEM1 SGDID:S0000367, Chr II from 565678-567435

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	PARC_control1-11112004-04.03030.03030.2	4.9037	0.3675	2222.91	2222.462	1	1653.4	64.7%	1	R.NFYDFYSQNLSNQLLNLK.F	2
*	PARC_control1-11112004-04.03179.03179.2	4.2309	0.2158	1819.99	1820.182	1	1642.0	70.0%	1	K.ILTFILTNPLFANDVK.N	2

KERATIN15

5.7%

629

64511

6.5

no description

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
	PARC_control1-11112004-03.01279.01279.2	2.6228	0.1479	1476.21	1477.701	2	994.2	68.2%	1	R.FLEQQNKVLETK.W	2 2 2
*	PARC_control1-11112004-03.02383.02383.2	5.4288	0.2974	1302.71	1303.452	2	2003.5	79.2%	16	R.SLDLDSIIAEVGA.Q	2
*	PARC_control1-11112004-03.02422.02422.1	3.3087	0.2849	1302.83	1303.452	3	986.4	62.5%	8	R.SLDLDSIIAEVGA.Q	1
	PARC_control1-11112004-04.02299.02299.2	4.1574	0.3768	1264.41	1264.464	1	1727.2	90.0%	1	K.LALDVEIATYR.K	2 2 2 2 2 2

Similarities: KERATIN22(1:3)
KERATIN21(1:3)
KERATIN18(1:3)
KERATIN17(1:3)
KERATIN16(1:3)
KERATIN14(2:2)

ORFP:YIL126W

4.9%

1359

156742

6.7

STH1 SGDID:S0001388, Chr IX from 117992-122071

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	PARC_control1-11112004-02.02011.02011.2	4.297	0.4615	1754.57	1754.888	1	779.6	71.4%	1	K.DTDVPDYFLDLPDTK.N	2
*	PARC_control1-11112004-04.02847.02847.2	4.0136	0.4159	2171.33	2171.418	1	962.5	52.8%	1	R.LPANLGTYSLDDCLEFITK.D	2
*	PARC_control1-11112004-03.02178.02178.2	4.2481	0.3861	1566.99	1567.696	1	1500.1	84.6%	1	R.QTNSFLDSLSEAVR.A	2
*	PARC_control1-11112004-03.02360.02360.2	4.7971	0.4354	2135.09	2134.266	1	870.0	58.8%	1	K.TFEDWFNTPFANTGTQEK.L	2

ORFP:YLR258W

4.4%

705

80079

6.4

GSY2 SGDID:S0004248, Chr XII from 660716-662833

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	PARC_control1-11112004-03.02052.02052.2	4.638	0.3581	1596.43	1595.749	1	1775.4	79.2%	2	K.ATYQNEVDILDWK.K	2
*	PARC_control1-11112004-03.03219.03219.2	2.5495	0.3428	2128.17	2129.343	1	437.6	41.2%	1	K.APDESVEQLVDYMEEFVK.K	2

KERATIN16

4.3%

534

57265

6.6

no description

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
	PARC_control1-11112004-03.01279.01279.2	2.6228	0.1479	1476.21	1477.701	2	994.2	68.2%	1	Q.FLEQQNKVLETK.W	2 2 2
2	PARC_control1-11112004-04.02473.02473.1	2.8607	0.3321	1277.71	1278.491	2	400.3	70.0%	1	K.LALDIEIATYR.K	1 1 1 1
2	PARC_control1-11112004-03.02060.02060.2	4.5392	0.3531	1278.49	1278.491	1	2186.9	90.0%	2	K.LALDIEIATYR.K	2 2 2 2

Similarities: KERATIN13(2:1)
KERATIN20(2:1)
KERATIN15(1:2)
KERATIN14(1:2)
KERATIN19(2:1)

ORFP:YGL206C

4.0%

1653

187233

5.2

CHC1 SGDID:S0003174, Chr VII from 107506-102545, reverse complement

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	PARC_control1-11112004-03.02176.02176.2	5.5585	0.4675	2390.55	2391.637	1	1523.5	61.9%	1	R.ASEFAVSLLQNPETASQIDIEK.I	2
*	PARC_control1-11112004-03.03031.03031.3	4.89	0.5058	2760.11	2761.191	1	1605.7	33.3%	1	K.ILLPFLEQSLSQGIQDQAVYNALAK.I	3
*	PARC_control1-11112004-04.02791.02791.2	4.4834	0.491	2112.77	2113.378	1	1152.0	55.6%	2	K.INTPELWSQIGTAQLDGLR.I	2

U	GR78_YEAST	2	3	4.0%	682	74468	4.9	owl\|P16474\| 78 KD GLUCOSE REGULATED PROTEIN HOMOLOG PRECURSOR (GRP 78) (IMMUNOGLOBULIN...
U	ORFP:YJL034W	2	3	4.0%	682	74468	4.9	KAR2 SGDID:S0003571, Chr X from 381023-383071

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
	PARC_control1-11112004-01.01695.01695.1	2.5265	0.2137	1081.71	1082.161	3	291.7	68.8%	2	V.PAYFNDAQR.Q	1 1 1 1 1
	PARC_control1-11112004-03.02643.02643.2	2.8365	0.3057	2023.51	2024.232	1	970.3	47.1%	1	R.IEIDSFVDGIDLSETLTR.A	2

Similarities: ORFP:YDL229W(1:1)
ORFP:YNL209W(1:1)
GR78_HUMAN(1:1)
GR78_LYCES(1:1)

GR78_LYCES

3.8%

666

73235

5.2

owl|P49118| 78 KD GLUCOSE REGULATED PROTEIN HOMOLOG PRECURSOR (GRP 78) (IMMUNOGLOBULIN...

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
	PARC_control1-11112004-01.01695.01695.1	2.5265	0.2137	1081.71	1082.161	3	291.7	68.8%	2	V.PAYFNDAQR.Q	1 1 1 1 1
	PARC_control1-11112004-03.01871.01871.2	2.9558	0.3091	1660.27	1660.908	1	1058.3	63.3%	1	R.IINEPTAAAIAYGLDK.K	2 2 2 2 2 2

Similarities: ORFP:YDL229W(1:1)
ORFP:YNL209W(1:1)
ORFP:YLL024C(1:1)
ORFP:YAL005C(1:1)
ORFP:YER103W(1:1)
ORFP:YBL075C(1:1)
GR78_HUMAN(2:0)
GR78_YEAST(1:1)

ORFP:YMR116C

3.8%

319

34805

6.2

ASC1 SGDID:S0004722, Chr XIII from 500687-500151,499877-499455, reverse complement

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	PARC_control1-11112004-03.01767.01767.2	3.8968	0.3107	1265.79	1266.483	1	1788.8	86.4%	2	R.YWLAAATATGIK.V	2
*	PARC_control1-11112004-03.01775.01775.1	2.5696	0.1714	1266.59	1266.483	1	641.5	63.6%	1	R.YWLAAATATGIK.V	1

KERATIN14

3.6%

638

65871

8.1

no description

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
	PARC_control1-11112004-03.01279.01279.2	2.6228	0.1479	1476.21	1477.701	2	994.2	68.2%	1	R.FLEQQNKVLETK.W	2 2 2
	PARC_control1-11112004-04.02299.02299.2	4.1574	0.3768	1264.41	1264.464	1	1727.2	90.0%	1	K.LALDVEIATYR.K	2 2 2 2 2 2

Similarities: KERATIN22(1:1)
KERATIN21(1:1)
KERATIN18(1:1)
KERATIN17(1:1)
KERATIN15(2:0)
KERATIN16(1:1)

KERATIN19

2.4%

468

51203

5.5

no description

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
2	PARC_control1-11112004-04.02473.02473.1	2.8607	0.3321	1277.71	1278.491	2	400.3	70.0%	1	K.LALDIEIATYR.K	1 1 1 1
2	PARC_control1-11112004-03.02060.02060.2	4.5392	0.3531	1278.49	1278.491	1	2186.9	90.0%	2	K.LALDIEIATYR.K	2 2 2 2

Similarities: KERATIN13(2:0)
KERATIN20(2:0)
KERATIN16(2:0)

ORFP:YPL231W

1.5%

1887

206945

5.4

FAS2 SGDID:S0006152, Chr XVI from 108652-114315

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	PARC_control1-11112004-03.02128.02128.2	3.0489	0.3916	1350.09	1350.555	1	512.5	72.7%	1	R.QLSSLFLDGLEK.A	2
*	PARC_control1-11112004-03.02499.02499.2	4.6647	0.3556	1598.55	1598.84	1	1669.0	65.6%	1	K.GSIGAEVLQGLLQGGAK.V	2

	Proteins	Peptide IDs	Copies
Unfiltered	4902	11132	21233
Redundant	83	398	1153
Nonredundant	72	303	870

/wfs/bfd/16/Aaron/November2004/Kellogg/control1_11112004/parc