D splitted

645

65865

8.0

no description

	Filename	XCorr	DeltCN	Conf%	ObsM+H+	CalcM+H+	PPM	SpR	ZScore	Ion%	#	Sequence
*	Mito_1_14.05046.05046.4	3.809	0.2407	100.0%	1982.0665	1981.0713	-4.1	1	5.043	40.6%	1	R.HGDSLKEIKIEISELNR.V	4
*	Mito_1_25.08926.08926.3	5.1268	0.2927	100.0%	2200.1465	2198.141	-0.6	1	5.693	45.8%	2	R.NKLNDLEEALQQAKEDLAR.L	3

YHR019C

554

62207

5.8

DED81 SGDID:S000001061, Chr VIII from 143551-141887, reverse complement, Verified ORF, "Cytosolic asparaginyl-tRNA synthetase, required for protein synthesis, catalyzes the specific attachment of asparagine to its cognate tRNA"

	Filename	XCorr	DeltCN	Conf%	ObsM+H+	CalcM+H+	PPM	SpR	ZScore	Ion%	#	Sequence
*	Mito_1_25.08832.08832.4	4.77	0.2936	100.0%	3580.6423	3577.6353	-0.8	1	5.146	23.3%	1	K.DAITWLNEHDIKNEEGEDFKFGDDIAEAAER.K	4

YKL211C

484

53489

6.9

TRP3 SGDID:S000001694, Chr XI from 38154-36700, reverse complement, Verified ORF, "Bifunctional enzyme exhibiting both indole-3-glycerol-phosphate synthase and anthranilate synthase activities, forms multifunctional hetero-oligomeric anthranilate synthase:indole-3-glycerol phosphate synthase enzyme complex with Trp2p"

	Filename	XCorr	DeltCN	Conf%	ObsM+H+	CalcM+H+	PPM	SpR	ZScore	Ion%	#	Sequence
*	Mito_1_55.18982.18982.3	2.454	0.0487	100.0%	2994.6963	2993.6995	-2.2	150	2.725	20.2%	1	R.LAGADTVLLIVKMLSQPLLKELYSYSK.D	3

YPR056W

338

37457

8.8

TFB4 SGDID:S000006260, Chr XVI from 671123-672139, Verified ORF, "Subunit of TFIIH complex, involved in transcription initiation, similar to 34 kDa subunit of human TFIIH; interacts with Ssl1p"

	Filename	XCorr	DeltCN	Conf%	ObsM+H+	CalcM+H+	PPM	SpR	ZScore	Ion%	#	Sequence
*	Mito_1_54.18683.18683.2	1.2864	0.0862	96.2%	2295.5225	2294.4675	22.5	1	4.824	25.0%	1	K.LKRKPVVPRLKAKKKVT*KP.-	2

Reverse_YOR335C

5.5%

958

107277

5.5

ALA1 SGDID:S000005862, Chr XV from 949104-946228, reverse complement, Verified ORF, "Cytoplasmic alanyl-tRNA synthetase, required for protein synthesis; point mutation (cdc64-1 allele) causes cell cycle arrest at G1; lethality of null mutation is functionally complemented by human homolog"

	Filename	XCorr	DeltCN	Conf%	ObsM+H+	CalcM+H+	PPM	SpR	ZScore	Ion%	#	Sequence
*	Mito_1_44.15276.15276.4	4.6312	0.2423	95.8%	5955.6963	5954.9097	-36.4	69	3.969	13.1%	1	K.NVHT*GGCFEISYKTWEENAPNALLEEIPKGVSVVRVPDPYTEGFVARVGDISK.A	4

YOR320C

5.5%

491

57578

8.4

GNT1 SGDID:S000005847, Chr XV from 915089-913614, reverse complement, Verified ORF, "N-acetylglucosaminyltransferase capable of modification of N-linked glycans in the Golgi apparatus"

	Filename	XCorr	DeltCN	Conf%	ObsM+H+	CalcM+H+	PPM	SpR	ZScore	Ion%	#	Sequence
*	Mito_1_46.15896.15896.5	2.5759	0.055	97.3%	2931.7947	2930.6448	50.0	8	2.653	25.5%	1	K.LVLLISKDLLDPNTSSNVAYISSLLNK.I	5

U	YGR254W	1	1	5.5%	437	46816	6.6	ENO1 SGDID:S000003486, Chr VII from 1000932-1002245, Verified ORF, "Enolase I, a phosphopyruvate hydratase that catalyzes the conversion of 2-phosphoglycerate to phosphoenolpyruvate during glycolysis and the reverse reaction during gluconeogenesis; expression is repressed in response to glucose"
U	YHR174W	1	1	5.5%	437	46914	6.0	ENO2 SGDID:S000001217, Chr VIII from 451327-452640, Verified ORF, "Enolase II, a phosphopyruvate hydratase that catalyzes the conversion of 2-phosphoglycerate to phosphoenolpyruvate during glycolysis and the reverse reaction during gluconeogenesis; expression is induced in response to glucose"

	Filename	XCorr	DeltCN	Conf%	ObsM+H+	CalcM+H+	PPM	SpR	ZScore	Ion%	#	Sequence
	Mito_1_37.12734.12734.3	7.2499	0.4773	100.0%	2987.3896	2984.389	-3.1	1	8.655	44.6%	1	K.RYPIVSIEDPFAEDDWEAWSHFFK.T	3

Reverse_YGL167C

950

104571

5.7

PMR1 SGDID:S000003135, Chr VII from 190474-187622, reverse complement, Verified ORF, "High affinity Ca2+/Mn2+ P-type ATPase required for Ca2+ and Mn2+ transport into Golgi; involved in Ca2+ dependent protein sorting and processing; mutations in human homolog ATP2C1 cause acantholytic skin condition Hailey-Hailey disease"

	Filename	XCorr	DeltCN	Conf%	ObsM+H+	CalcM+H+	PPM	SpR	ZScore	Ion%	#	Sequence
*	Mito_1_30.10347.10347.6	3.6748	0.0987	93.3%	5678.858	5676.8716	-3.6	2	3.142	15.6%	1	E.LLAVDTPNGLFIAHEQSFSANNCLNGITLTERVDETLYNKLNGNSNKTKKN.K	6

Reverse_YJL045W

634

69382

7.4

YJL045W SGDID:S000003581, Chr X from 355940-357844, Uncharacterized ORF, "Similar to SDH1"

	Filename	XCorr	DeltCN	Conf%	ObsM+H+	CalcM+H+	PPM	SpR	ZScore	Ion%	#	Sequence
*	Mito_1_18.06306.06306.5	3.3144	0.1277	96.4%	3665.7273	3665.7336	-1.7	436	3.449	20.1%	1	S.GKVTDYMHSKWDDPHMNGLAANIGGQAAVTHSRT.P	5

YDL226C

352

39296

5.9

GCS1 SGDID:S000002385, Chr IV from 52174-51116, reverse complement, Verified ORF, "ADP-ribosylation factor GTPase activating protein (ARF GAP), involved in ER-Golgi transport; shares functional similarity with Glo3p"

	Filename	XCorr	DeltCN	Conf%	ObsM+H+	CalcM+H+	PPM	SpR	ZScore	Ion%	#	Sequence
*	Mito_1_59.20397.20397.2	1.5351	0.0731	99.2%	1887.9312	1883.8859	16.9	21	3.463	33.3%	1	K.LSATSQT*AASATPGVAQSR.E	2

YJR009C

332

35847

7.0

TDH2 SGDID:S000003769, Chr X from 454595-453597, reverse complement, Verified ORF, "Glyceraldehyde-3-phosphate dehydrogenase, isozyme 2, involved in glycolysis and gluconeogenesis; tetramer that catalyzes the reaction of glyceraldehyde-3-phosphate to 1,3 bis-phosphoglycerate; detected in the cytoplasm and cell-wall "

	Filename	XCorr	DeltCN	Conf%	ObsM+H+	CalcM+H+	PPM	SpR	ZScore	Ion%	#	Sequence
*	Mito_1_4.01337.01337.3	3.8044	0.3798	100.0%	2021.9829	2019.9883	-6.0	192	6.574	29.4%	13	R.YAGEVSHDDKHIIVDGHK.I	3

YGR192C

332

35747

7.0

TDH3 SGDID:S000003424, Chr VII from 883815-882817, reverse complement, Verified ORF, "Glyceraldehyde-3-phosphate dehydrogenase, isozyme 3, involved in glycolysis and gluconeogenesis; tetramer that catalyzes the reaction of glyceraldehyde-3-phosphate to 1,3 bis-phosphoglycerate; detected in the cytoplasm and cell-wall "

	Filename	XCorr	DeltCN	Conf%	ObsM+H+	CalcM+H+	PPM	SpR	ZScore	Ion%	#	Sequence
*	Mito_1_9.03536.03536.3	4.6902	0.356	100.0%	2012.0182	2011.0243	-4.7	1	7.623	47.1%	9	R.YAGEVSHDDKHIIVDGKK.I	3
*	Mito_1_6.02195.02195.4	3.2234	0.3133	100.0%	2015.0376	2011.0243	-0.1	1	5.755	35.3%	1	R.YAGEVSHDDKHIIVDGKK.I	4

Reverse_YNL256W

5.3%

824

93120

6.4

FOL1 SGDID:S000005200, Chr XIV from 164624-167098, Verified ORF, "Multifunctional enzyme of the folic acid biosynthesis pathway, has dihydropteroate synthetase, dihydro-6-hydroxymethylpterin pyrophosphokinase, and dihydroneopterin aldolase activities"

	Filename	XCorr	DeltCN	Conf%	ObsM+H+	CalcM+H+	PPM	SpR	ZScore	Ion%	#	Sequence
*	Mito_1_37.12983.12983.5	3.0449	0.0069	94.3%	5329.656	5329.693	-7.0	419	2.544	14.8%	1	R.SPGLLVPMNRLNVYVQSNNSNMTFSYNKLIPIHRIIQLNQKWTK.A	5

YJR064W

5.3%

562

61914

5.5

CCT5 SGDID:S000003825, Chr X from 555828-557516, Verified ORF, "Subunit of the cytosolic chaperonin Cct ring complex, related to Tcp1p, required for the assembly of actin and tubulins in vivo"

	Filename	XCorr	DeltCN	Conf%	ObsM+H+	CalcM+H+	PPM	SpR	ZScore	Ion%	#	Sequence
*	Mito_1_62.21477.21477.3	5.0256	0.3027	100.0%	3101.6099	3098.6104	-3.4	1	6.363	27.6%	2	K.SQDDEIGDGTTGVVVLASALLDQALELIQK.G	3

Reverse_YGL244W

5.2%

558

65869

5.4

RTF1 SGDID:S000003213, Chr VII from 41498-43174, Verified ORF, "Subunit of the RNA polymerase II-associated Paf1 complex; directly or indirectly regulates DNA-binding properties of Spt15p (TATA box-binding protein) and relative activities of different TATA elements"

	Filename	XCorr	DeltCN	Conf%	ObsM+H+	CalcM+H+	PPM	SpR	ZScore	Ion%	#	Sequence
*	Mito_1_48.16553.16553.5	2.1258	0.1202	97.5%	3225.9568	3221.7937	46.4	230	2.997	18.8%	1	R.QKKLQSLKSAKIDSHGTAHTSRTSARTKR.S	5

Reverse_YHL020C

5.2%

404

46065

5.2

OPI1 SGDID:S000001012, Chr VIII from 67453-66239, reverse complement, Verified ORF, "Transcriptional regulator of a variety of genes; phosphorylation by protein kinase A stimulates Opi1p function in negative regulation of phospholipid biosynthetic genes"

	Filename	XCorr	DeltCN	Conf%	ObsM+H+	CalcM+H+	PPM	SpR	ZScore	Ion%	#	Sequence
*	Mito_1_13.04659.04659.3	3.125	0.044	96.1%	2615.1353	2614.2312	-38.0	42	3.401	30.0%	1	R.KNTNIEDYFTVVNSIIKNSVR.D	3

YPR168W

5.1%

157

17908

5.0

NUT2 SGDID:S000006372, Chr XVI from 878072-878545, Verified ORF, "Component of the RNA polymerase II mediator complex, which is required for transcriptional activation and also has a role in basal transcription"

	Filename	XCorr	DeltCN	Conf%	ObsM+H+	CalcM+H+	PPM	SpR	ZScore	Ion%	#	Sequence
*	Mito_1_17.06035.06035.2	1.6859	0.0906	100.0%	944.53784	942.5142	17.9	25	3.494	64.3%	1	K.EPVEDIIK.R	2

YGL144C

5.0%

685

78142

6.0

ROG1 SGDID:S000003112, Chr VII from 234512-232455, reverse complement, Verified ORF, "Protein with putative serine active lipase domain"

	Filename	XCorr	DeltCN	Conf%	ObsM+H+	CalcM+H+	PPM	SpR	ZScore	Ion%	#	Sequence
*	Mito_1_47.16098.16098.3	3.488	0.0405	91.2%	3867.7603	3866.7798	-5.9	18	2.834	19.7%	1	N.GDDDDDNDENDDINSTQVVEPIQSVTEGKKKYRK.A	3

YOR315W

4.9%

346

39021

8.1

SFG1 SGDID:S000005842, Chr XV from 904755-905795, Verified ORF, "Nuclear protein, putative transcription factor required for growth of superficial pseudohyphae (which do not invade the agar substrate) but not for invasive pseudohyphal growth; may act together with Phd1p; potential Cdc28p substrate"

	Filename	XCorr	DeltCN	Conf%	ObsM+H+	CalcM+H+	PPM	SpR	ZScore	Ion%	#	Sequence
*	Mito_1_57.19792.19792.2	1.4715	0.0241	94.0%	2181.8838	2179.9578	-37.0	61	2.875	34.4%	1	R.DELTQCNELQSTKDY*KK.V	2

Reverse_YHR061C

4.8%

314

35238

6.5

GIC1 SGDID:S000001103, Chr VIII from 222480-221536, reverse complement, Verified ORF, "Protein of unknown function involved in initiation of budding and cellular polarization, interacts with Cdc42p via the Cdc42/Rac-interactive binding (CRIB) domain"

	Filename	XCorr	DeltCN	Conf%	ObsM+H+	CalcM+H+	PPM	SpR	ZScore	Ion%	#	Sequence
*	Mito_1_52.18011.18011.2	1.5754	0.0674	93.9%	1752.0192	1747.9326	41.7	311	3.428	28.6%	1	K.ATKAS*GHRRSLLDKK.K	2

YJL156C

4.7%

687

76178

6.5

SSY5 SGDID:S000003692, Chr X from 128870-126807, reverse complement, Verified ORF, "Component of the SPS plasma membrane amino acid sensor system (Ssy1p-Ptr3p-Ssy5p), which senses external amino acid concentration and transmits intracellular signals that result in regulation of expression of amino acid permease genes"

	Filename	XCorr	DeltCN	Conf%	ObsM+H+	CalcM+H+	PPM	SpR	ZScore	Ion%	#	Sequence
*	Mito_1_35.12047.12047.4	2.461	0.0132	99.2%	3397.7646	3392.7373	3.1	191	2.513	18.8%	1	K.LQSSEFVVASPTPLFASAGDSGAWILTKLEDR.L	4

Reverse_YPR088C

4.6%

541

59624

8.6

SRP54 SGDID:S000006292, Chr XVI from 713026-711401, reverse complement, Verified ORF, "Signal recognition particle (SRP) subunit (homolog of mammalian SRP54); contains the signal sequence-binding activity of SRP, interacts with the SRP RNA, and mediates binding of SRP to signal receptor; contains GTPase domain"

	Filename	XCorr	DeltCN	Conf%	ObsM+H+	CalcM+H+	PPM	SpR	ZScore	Ion%	#	Sequence
*	Mito_1_31.10763.10763.3	2.9386	0.1184	95.0%	2941.2751	2940.418	-49.7	309	3.288	22.9%	1	K.KFKNIGEEAVKAPDT*ETYSGYFPIR.A	3

contaminant_KERATIN03

4.6%

593

59519

5.2

no description

	Filename	XCorr	DeltCN	Conf%	ObsM+H+	CalcM+H+	PPM	SpR	ZScore	Ion%	#	Sequence
*	Mito_1_21.07606.07606.4	4.1224	0.285	100.0%	3198.6272	3196.6333	-4.0	1	4.929	31.4%	2	K.SKELTTEIDNNIEQISSYKSEITELRR.N	4

YDR475C

4.5%

876

98691

9.6

YDR475C SGDID:S000002883, Chr IV from 1410084-1407454, reverse complement, Uncharacterized ORF, "Protein of unknown function; previously annotated as two separate ORFs, YDR474C and YDR475C, which were merged as a result of corrections to the systematic reference sequence"

	Filename	XCorr	DeltCN	Conf%	ObsM+H+	CalcM+H+	PPM	SpR	ZScore	Ion%	#	Sequence
*	Mito_1_33.11628.11628.4	3.6935	0.0049	93.7%	4347.1885	4344.121	13.2	378	2.582	16.2%	1	K.KPVVTSAHLKPSSGGGGLFSFFKSKSRSPSSFRKEDESK.N	4

Reverse_YBR044C

4.5%

573

64259

8.9

TCM62 SGDID:S000000248, Chr II from 326058-324337, reverse complement, Verified ORF, "Protein involved in the assembly of the mitochondrial succinate dehydrogenase complex; putative chaperone"

	Filename	XCorr	DeltCN	Conf%	ObsM+H+	CalcM+H+	PPM	SpR	ZScore	Ion%	#	Sequence
*	Mito_1_33.11379.11379.3	2.9813	0.0705	97.9%	2948.283	2948.3584	-25.6	326	3.026	23.0%	1	K.NRNNNITVSTLADGTCDGNVILLVSK.R	3

Reverse_YKL027W

4.5%

447

50266

8.8

YKL027W SGDID:S000001510, Chr XI from 387205-388548, Uncharacterized ORF, "Putative protein of unknown function; detectable in highly purified mitochondria"

	Filename	XCorr	DeltCN	Conf%	ObsM+H+	CalcM+H+	PPM	SpR	ZScore	Ion%	#	Sequence
*	Mito_1_41.14047.14047.4	1.6181	0.0219	96.9%	2139.3235	2138.2332	40.7	222	2.942	20.2%	1	K.KPDPKEASFVVPIGSLIGRK.K	4

YBR127C

4.4%

517

57749

5.1

VMA2 SGDID:S000000331, Chr II from 492816-491263, reverse complement, Verified ORF, "Subunit B of the eight-subunit V1 peripheral membrane domain of the vacuolar H+-ATPase (V-ATPase), an electrogenic proton pump found throughout the endomembrane system; contains nucleotide binding sites; also detected in the cytoplasm"

	Filename	XCorr	DeltCN	Conf%	ObsM+H+	CalcM+H+	PPM	SpR	ZScore	Ion%	#	Sequence
*	Mito_1_13.04709.04709.3	3.2183	0.0213	100.0%	2801.172	2800.1816	-4.6	163	3.465	25.0%	1	K.ILDEFYDRARDDADEDEEDPDTR.S	3

U	contaminant_SPA1_STAAU	2	7	4.4%	524	57320	5.7	owl\|P02976\| IMMUNOGLOBULIN G BINDING PROTEIN A PRECURSOR (PROTEIN A). - STAPHYLOCOCCUS...
U	contaminant_SPA2_STAAU	2	7	4.5%	508	55439	5.7	owl\|P38507\| IMMUNOGLOBULIN G BINDING PROTEIN A PRECURSOR (PROTEIN A). - STAPHYLOCOCCUS...

	Filename	XCorr	DeltCN	Conf%	ObsM+H+	CalcM+H+	PPM	SpR	ZScore	Ion%	#	Sequence
	Mito_1_25.08958.08958.4	4.5988	0.3184	100.0%	2877.4207	2874.417	-2.2	1	6.651	31.1%	4	K.FNKEQQNAFYEILHLPNLNEEQR.N	4
	Mito_1_28.09883.09883.3	3.7374	0.2655	100.0%	2488.216	2485.2107	-1.9	1	5.572	34.2%	3	K.EQQNAFYEILHLPNLNEEQR.N	3

YAL038W

4.4%

500

54545

7.7

CDC19 SGDID:S000000036, Chr I from 71787-73289, Verified ORF, "Pyruvate kinase, functions as a homotetramer in glycolysis to convert phosphoenolpyruvate to pyruvate, the input for aerobic (TCA cycle) or anaerobic (glucose fermentation) respiration"

	Filename	XCorr	DeltCN	Conf%	ObsM+H+	CalcM+H+	PPM	SpR	ZScore	Ion%	#	Sequence
*	Mito_1_30.10516.10516.3	3.5816	0.3899	100.0%	2571.226	2569.2246	-2.0	4	7.194	29.8%	1	R.GVFPFVFEKEPVSDWTDDVEAR.I	3

U	Reverse_YDL244W	1	1	4.4%	340	38574	8.0	THI13 SGDID:S000002403, Chr IV from 16204-17226, Verified ORF, "Protein involved in synthesis of the thiamine precursor hydroxymethylpyrimidine (HMP); member of a subtelomeric gene family including THI5, THI11, THI12, and THI13"
U	Reverse_YNL332W	1	1	4.4%	340	38620	8.1	THI12 SGDID:S000005276, Chr XIV from 14832-15854, Verified ORF, "Protein involved in synthesis of the thiamine precursor hydroxymethylpyrimidine (HMP); member of a subtelomeric gene family including THI5, THI11, THI12, and THI13"
U	Reverse_YJR156C	1	1	4.4%	340	38632	7.8	THI11 SGDID:S000003917, Chr X from 729511-728489, reverse complement, Verified ORF, "Protein involved in synthesis of the thiamine precursor hydroxymethylpyrimidine (HMP); member of a subtelomeric gene family including THI5, THI11, THI12, and THI13"
U	Reverse_YFL058W	1	1	4.4%	340	38592	8.0	THI5 SGDID:S000001836, Chr VI from 12929-13951, Verified ORF, "Protein involved in synthesis of the thiamine precursor hydroxymethylpyrimidine (HMP); member of a subtelomeric gene family including THI5, THI11, THI12, and THI13"

	Filename	XCorr	DeltCN	Conf%	ObsM+H+	CalcM+H+	PPM	SpR	ZScore	Ion%	#	Sequence
	Mito_1_66.22640.22640.2	1.266	0.1007	99.5%	1827.1846	1827.1691	8.5	87	3.482	28.6%	1	K.KIAKLFKRVKEPNKK.L	2

YLR412W

4.4%

274

31707

7.2

YLR412W SGDID:S000004404, Chr XII from 948365-949189, Uncharacterized ORF, "Hypothetical protein"

	Filename	XCorr	DeltCN	Conf%	ObsM+H+	CalcM+H+	PPM	SpR	ZScore	Ion%	#	Sequence
*	Mito_1_28.09913.09913.3	1.6424	0.0432	99.6%	1475.8947	1472.8768	5.3	37	2.748	38.6%	1	R.KRKNRNNSSKLK.V	3

YBR142W

773

87048

8.4

MAK5 SGDID:S000000346, Chr II from 528311-530632, Verified ORF, "Essential nucleolar protein, putative DEAD-box RNA helicase required for maintenance of M1 dsRNA virus; involved in biogenesis of large (60S) ribosomal subunits"

	Filename	XCorr	DeltCN	Conf%	ObsM+H+	CalcM+H+	PPM	SpR	ZScore	Ion%	#	Sequence
*	Mito_1_21.07590.07590.6	2.9242	0.0359	96.1%	3697.8245	3691.7883	4.3	474	2.562	20.3%	1	R.TARAGSEGVSAMICSPQESMGPLRKLRKTLATK.N	6

YJL209W

654

76172

9.5

CBP1 SGDID:S000003745, Chr X from 38005-39969, Verified ORF, "Mitochondrial protein that interacts with the 5'-untranslated region of the COB mRNA and has a role in its stability and translation; found in a complex at the inner membrane along with Pet309p"

	Filename	XCorr	DeltCN	Conf%	ObsM+H+	CalcM+H+	PPM	SpR	ZScore	Ion%	#	Sequence
*	Mito_1_59.20236.20236.3	3.3566	0.1348	98.8%	3576.8218	3575.7012	32.8	244	3.169	20.4%	1	R.RECLYQCKKNLDLVNQVVSQVSSVRHQK.P	3

Reverse_YDR118W

652

75256

5.8

APC4 SGDID:S000002525, Chr IV from 685877-687835, Verified ORF, "Subunit of the Anaphase-Promoting Complex/Cyclosome (APC/C), which is a ubiquitin-protein ligase required for degradation of anaphase inhibitors, including mitotic cyclins, during the metaphase/anaphase transition"

	Filename	XCorr	DeltCN	Conf%	ObsM+H+	CalcM+H+	PPM	SpR	ZScore	Ion%	#	Sequence
*	Mito_1_47.16250.16250.5	1.6992	0.0267	96.8%	3142.9568	3134.7825	46.9	84	2.517	19.9%	1	K.LLVEVATLDSTYSLKNQISFAQLIARLK.E	5

Reverse_YLL018C

557

63516

6.6

DPS1 SGDID:S000003941, Chr XII from 111574-109901, reverse complement, Verified ORF, "Cytoplasmic aspartyl-tRNA synthetase, homodimeric enzyme that catalyzes the specific aspartylation of tRNA(Asp); class II aminoacyl tRNA synthetase; binding to its own mRNA may confer autoregulation"

	Filename	XCorr	DeltCN	Conf%	ObsM+H+	CalcM+H+	PPM	SpR	ZScore	Ion%	#	Sequence
*	Mito_1_39.13576.13576.7	1.8411	0.0010	98.6%	2833.6196	2819.535	13.3	267	2.311	18.1%	1	R.FLECVGAQIRFIAQNTVTRLDIVR.Y	7

YOR361C

4.2%

763

88130

6.0

PRT1 SGDID:S000005888, Chr XV from 1017648-1015357, reverse complement, Verified ORF, "Subunit of the core complex of translation initiation factor 3(eIF3), essential for translation; part of a subcomplex (Prt1p-Rpg1p-Nip1p) that stimulates binding of mRNA and tRNA(i)Met to ribosomes"

	Filename	XCorr	DeltCN	Conf%	ObsM+H+	CalcM+H+	PPM	SpR	ZScore	Ion%	#	Sequence
*	Mito_1_55.18800.18800.3	3.7906	0.2164	100.0%	3728.7644	3725.769	-3.9	2	4.526	26.6%	2	K.IFDVQPEDASDDFTTIEEIVEEVLEETKEKVE.-	3

U	YDL229W	1	1	4.2%	613	66602	5.4	SSB1 SGDID:S000002388, Chr IV from 44066-45907, Verified ORF, "Cytoplasmic ATPase that is a ribosome-associated molecular chaperone; may be involved in the folding of newly-synthesized polypeptide chains; member of the heat shock protein 70 (HSP70) family; interacts with the phosphatase subunit Reg1p"
U	YNL209W	1	1	4.2%	613	66595	5.5	SSB2 SGDID:S000005153, Chr XIV from 252060-253901, Verified ORF, "Cytoplasmic ATPase that is a ribosome-associated molecular chaperone; may be involved in the folding of newly-synthesized polypeptide chains; member of the heat shock protein 70 (HSP70) family; homolog of SSB1"

	Filename	XCorr	DeltCN	Conf%	ObsM+H+	CalcM+H+	PPM	SpR	ZScore	Ion%	#	Sequence
	Mito_1_31.10843.10843.3	4.8465	0.2953	100.0%	2758.447	2754.452	-6.6	1	5.272	35.0%	1	K.SKIEAALSDALAALQIEDPSADELRK.A	3

YKL105C

4.0%

1132

125593

5.8

YKL105C SGDID:S000001588, Chr XI from 242227-238829, reverse complement, Uncharacterized ORF, "Putative protein of unknown function"

	Filename	XCorr	DeltCN	Conf%	ObsM+H+	CalcM+H+	PPM	SpR	ZScore	Ion%	#	Sequence
*	Mito_1_41.14319.14319.5	2.5326	0.0035	93.8%	5099.534	5096.5386	-2.8	72	2.957	16.2%	1	R.PAKDNLGFRSMSLREPLITKNATATAAENLDVEEKKEKGGHVSRK.S	5

Reverse_YML007W

4.0%

650

72533

5.0

YAP1 SGDID:S000004466, Chr XIII from 253848-255800, Verified ORF, "Basic leucine zipper (bZIP) transcription factor required for oxidative stress tolerance; mediates pleiotropic drug and metal resistance; localized to the nucleus in response to the presence of oxidants"

	Filename	XCorr	DeltCN	Conf%	ObsM+H+	CalcM+H+	PPM	SpR	ZScore	Ion%	#	Sequence
*	Mito_1_39.13546.13546.3	2.7585	0.0157	94.1%	2749.1838	2749.3113	-46.4	39	2.937	25.0%	1	R.SKSGEFEALSGPSVVDLSRKAT*SVSM.-	3

Reverse_YMR309C

812

93204

5.0

NIP1 SGDID:S000004926, Chr XIII from 895425-892987, reverse complement, Verified ORF, "Subunit of the eukaryotic translation initiation factor 3 (eIF3), involved in the assembly of preinitiation complex and start codon selection"

	Filename	XCorr	DeltCN	Conf%	ObsM+H+	CalcM+H+	PPM	SpR	ZScore	Ion%	#	Sequence
*	Mito_1_26.09094.09094.4	3.839	0.0163	92.1%	3760.844	3755.7578	18.5	212	2.464	20.4%	1	K.LDAQQTNNVADEVQAVVKIFINPTGWNQQQAR.V	4

YHR020W

688

77386

6.4

YHR020W SGDID:S000001062, Chr VIII from 143989-146055, Uncharacterized ORF, "Protein required for cell viability"

	Filename	XCorr	DeltCN	Conf%	ObsM+H+	CalcM+H+	PPM	SpR	ZScore	Ion%	#	Sequence
*	Mito_1_63.21557.21557.3	5.2744	0.414	100.0%	3055.591	3051.5813	-1.2	1	7.461	31.7%	5	K.DAEEEVLQILDFYAGVYEELLAVPVVK.G	3

Reverse_YLR098C

648

74393

7.0

CHA4 SGDID:S000004088, Chr XII from 339474-337528, reverse complement, Verified ORF, "DNA binding transcriptional activator, mediates serine/threonine activation of the catabolic L-serine (L-threonine) deaminase (CHA1); Zinc-finger protein with Zn[2]-Cys[6] fungal-type binuclear cluster domain"

	Filename	XCorr	DeltCN	Conf%	ObsM+H+	CalcM+H+	PPM	SpR	ZScore	Ion%	#	Sequence
*	Mito_1_18.06360.06360.3	1.7274	0.1331	96.4%	2807.2615	2803.3025	-19.4	272	3.415	18.8%	1	K.IISLSNSPYISNTGVPPPSESPMKK.T	3

Reverse_YPR111W

564

65880

8.5

DBF20 SGDID:S000006315, Chr XVI from 747304-748998, Verified ORF, "Ser/Thr kinase involved in late nuclear division, one of the mitotic exit network (MEN) proteins; necessary for the execution of cytokinesis"

	Filename	XCorr	DeltCN	Conf%	ObsM+H+	CalcM+H+	PPM	SpR	ZScore	Ion%	#	Sequence
*	Mito_1_62.21354.21354.3	2.517	0.062	97.6%	2524.241	2521.285	-21.4	3	3.133	32.1%	1	K.KKALY*VQGYGGQGVQTLIQFDK.H	3

YGR166W

560

63368

8.8

KRE11 SGDID:S000003398, Chr VII from 830520-832202, Verified ORF, "Protein involved in biosynthesis of cell wall beta-glucans; subunit of the TRAPP (transport protein particle) complex, which is involved in the late steps of endoplasmic reticulum to Golgi transport"

	Filename	XCorr	DeltCN	Conf%	ObsM+H+	CalcM+H+	PPM	SpR	ZScore	Ion%	#	Sequence
*	Mito_1_40.14011.14011.3	2.6996	0.1118	98.9%	2526.2053	2522.293	-40.0	239	3.485	27.4%	1	K.SSKNTNNHLEKNNRATHRVSSK.N	3

YOR310C

511

56956

8.9

	Filename	XCorr	DeltCN	Conf%	ObsM+H+	CalcM+H+	PPM	SpR	ZScore	Ion%	#	Sequence
*	Mito_1_40.13836.13836.3	2.5564	0.0818	97.9%	2280.1335	2274.1658	-23.0	22	3.455	32.9%	1	K.SPASTIQILGAEKALFRALK.T	3

YIL075C

3.8%

945

104232

6.2

RPN2 SGDID:S000001337, Chr IX from 220697-217860, reverse complement, Verified ORF, "Subunit of the 26S proteasome, substrate of the N-acetyltransferase Nat1p"

	Filename	XCorr	DeltCN	Conf%	ObsM+H+	CalcM+H+	PPM	SpR	ZScore	Ion%	#	Sequence
*	Mito_1_63.21729.21729.4	3.0842	0.1765	100.0%	4057.1892	4051.1606	2.1	100	3.81	18.6%	1	I.DVLDPLTKDPVDFVRQAAMIALSMILIQQTEKLNPQ.V	4

YER162C

3.8%

754

87204

7.8

RAD4 SGDID:S000000964, Chr V from 502889-500625, reverse complement, Verified ORF, "Protein that recognizes and binds damaged DNA (with Rad23p) during nucleotide excision repair; subunit of Nuclear Excision Repair Factor 2 (NEF2); homolog of human XPC protein"

	Filename	XCorr	DeltCN	Conf%	ObsM+H+	CalcM+H+	PPM	SpR	ZScore	Ion%	#	Sequence
*	Mito_1_29.10099.10099.3	4.161	0.1675	100.0%	3196.29	3194.2815	0.6	4	4.009	25.0%	1	Q.SSEEDYDSEEFEDVTDGNEVAGVEDISVE.I	3

YMR273C

3.7%

915

103358

6.4

ZDS1 SGDID:S000004886, Chr XIII from 813979-811232, reverse complement, Verified ORF, "Protein that interacts with silencing proteins at the telomere, involved in transcriptional silencing; has a role in localization of Bcy1p, a regulatory subunit of protein kinase A; implicated in mRNA nuclear export"

	Filename	XCorr	DeltCN	Conf%	ObsM+H+	CalcM+H+	PPM	SpR	ZScore	Ion%	#	Sequence
*	Mito_1_60.20707.20707.3	2.6906	0.0343	96.7%	3865.727	3862.816	-25.6	51	2.65	20.5%	1	R.YSDPTPLENLHGRGNSGIESSNKTKQGNYLGIKK.G	3

Reverse_YNL216W

3.7%

827

92413

5.0

RAP1 SGDID:S000005160, Chr XIV from 241690-244173, Verified ORF, "DNA-binding protein involved in either activation or repression of transcription, depending on binding site context; also binds telomere sequences and plays a role in telomeric position effect (silencing) and telomere structure"

	Filename	XCorr	DeltCN	Conf%	ObsM+H+	CalcM+H+	PPM	SpR	ZScore	Ion%	#	Sequence
*	Mito_1_28.09953.09953.5	3.1668	0.1026	91.4%	3568.7336	3567.7424	-3.4	71	2.718	20.0%	1	C.LDQVLKEAQSPEYDGSIVEHLKDMFQRTSGF.H	5

Reverse_YIL119C

3.7%

407

46623

9.1

RPI1 SGDID:S000001381, Chr IX from 137874-136651, reverse complement, Verified ORF, "Putative transcriptional regulator; overexpression suppresses the heat shock sensitivity of wild-type RAS2 overexpression and also suppresses the cell lysis defect of an mpk1 mutation"

	Filename	XCorr	DeltCN	Conf%	ObsM+H+	CalcM+H+	PPM	SpR	ZScore	Ion%	#	Sequence
*	Mito_1_49.17066.17066.2	1.001	0.1102	93.7%	1769.2063	1766.1123	47.4	8	3.678	28.6%	1	K.SKKKKQKSKKSPHVK.L	2

Reverse_YOR208W

750

85868

8.9

PTP2 SGDID:S000005734, Chr XV from 733925-736177, Verified ORF, "Phosphotyrosine-specific protein phosphatase involved in the inactivation of mitogen-activated protein kinase (MAPK) during osmolarity sensing; dephosporylates Hog1p MAPK and regulates its localization; localized to the nucleus"

	Filename	XCorr	DeltCN	Conf%	ObsM+H+	CalcM+H+	PPM	SpR	ZScore	Ion%	#	Sequence
*	Mito_1_34.11920.11920.3	2.9788	0.1504	99.6%	3066.4668	3066.4648	0.6	51	3.474	23.1%	1	R.YVPMQGPT*RTQNVQIHGKESIASSAMR.N	3

Reverse_YLR197W

504

56864

8.9

SIK1 SGDID:S000004187, Chr XII from 546099-547613, Verified ORF, "Essential evolutionarily-conserved nucleolar protein component of the box C/D snoRNP complexes that direct 2'-O-methylation of pre-rRNA during its maturation; overexpression causes spindle orientation defects"

	Filename	XCorr	DeltCN	Conf%	ObsM+H+	CalcM+H+	PPM	SpR	ZScore	Ion%	#	Sequence
*	Mito_1_25.08693.08693.3	4.3538	0.0773	99.0%	2187.1338	2185.061	30.2	60	3.506	41.2%	2	K.NY*LEMAEQIALENKLTPK.G	3

Reverse_YOR051C

412

47352

4.8

YOR051C SGDID:S000005577, Chr XV from 426085-424847, reverse complement, Uncharacterized ORF, "Nuclear protein that inhibits replication of Brome mosaic virus in S. cerevisiae, which is a model system for studying replication of positive-strand RNA viruses in their natural hosts"

	Filename	XCorr	DeltCN	Conf%	ObsM+H+	CalcM+H+	PPM	SpR	ZScore	Ion%	#	Sequence
*	Mito_1_33.11544.11544.3	1.5497	0.011	98.3%	1699.0632	1698.9796	49.2	159	3.032	32.1%	1	K.KERSQKGLGLPRKAM.-	3

YGR112W

389

45056

9.8

SHY1 SGDID:S000003344, Chr VII from 717362-718531, Verified ORF, "Mitochondrial inner membrane protein required for normal respiration, possible chaperone involved in assembly of cytochrome c oxidase; similar to SURF1 from mammals, chickens, and D. melanogaster"

	Filename	XCorr	DeltCN	Conf%	ObsM+H+	CalcM+H+	PPM	SpR	ZScore	Ion%	#	Sequence
*	Mito_1_2.00609.00609.4	2.294	0.0428	99.2%	1697.902	1694.8972	-3.1	365	3.037	33.3%	1	R.NLHHLSLPQEEHLK.V	4

Reverse_YPL174C

868

100290

5.8

NIP100 SGDID:S000006095, Chr XVI from 222772-220166, reverse complement, Verified ORF, "Large subunit of the dynactin complex, which is involved in partitioning the mitotic spindle between mother and daughter cells; putative ortholog of mammalian p150(glued)"

	Filename	XCorr	DeltCN	Conf%	ObsM+H+	CalcM+H+	PPM	SpR	ZScore	Ion%	#	Sequence
*	Mito_1_62.21441.21441.3	1.9487	0.0125	98.8%	3482.9136	3479.8906	3.7	69	2.542	19.8%	1	K.MNGNEVKLEKVLKDLRSIKSLLVTENTS*LK.E	3

YJR098C

655

74132

7.4

YJR098C SGDID:S000003859, Chr X from 615070-613103, reverse complement, Uncharacterized ORF, "Putative protein of unknown function; green fluorescent protein (GFP)-fusion protein localizes to the cytoplasm; detectable in highly purified mitochondria"

	Filename	XCorr	DeltCN	Conf%	ObsM+H+	CalcM+H+	PPM	SpR	ZScore	Ion%	#	Sequence
*	Mito_1_67.22923.22923.2	1.0532	0.0553	94.0%	2553.5593	2550.474	29.4	322	3.02	18.2%	1	K.SKLLPRKTKSALS*LKATLNATTK.F	2

YKR069W

593

66125

6.6

MET1 SGDID:S000001777, Chr XI from 571254-573035, Verified ORF, "S-adenosyl-L-methionine uroporphyrinogen III transmethylase, involved in sulfate assimilation, methionine metabolism, and siroheme biosynthesis"

	Filename	XCorr	DeltCN	Conf%	ObsM+H+	CalcM+H+	PPM	SpR	ZScore	Ion%	#	Sequence
*	Mito_1_21.07514.07514.2	3.1968	0.0991	100.0%	2105.015	2104.016	-2.2	6	3.592	40.0%	1	L.GKISLVGSGPGSVSMLTIGAL.Q	2

Reverse_YPL113C

396

45014

7.2

YPL113C SGDID:S000006034, Chr XVI from 337142-335952, reverse complement, Uncharacterized ORF, "Putative dehydrogenase"

	Filename	XCorr	DeltCN	Conf%	ObsM+H+	CalcM+H+	PPM	SpR	ZScore	Ion%	#	Sequence
*	Mito_1_6.02239.02239.4	2.7839	0.096	90.0%	1695.8958	1688.8171	32.5	39	3.463	39.7%	1	K.KGGVTYKEALHVVK.R	4

Reverse_YHR158C

1164

131094

5.4

KEL1 SGDID:S000001201, Chr VIII from 417182-413688, reverse complement, Verified ORF, "Protein required for proper cell fusion and cell morphology; functions in a complex with Kel2p to negatively regulate mitotic exit, interacts with Tem1p and Lte1p; localizes to regions of polarized growth; potential Cdc28p substrate"

	Filename	XCorr	DeltCN	Conf%	ObsM+H+	CalcM+H+	PPM	SpR	ZScore	Ion%	#	Sequence
*	Mito_1_14.05202.05202.3	2.6562	0.0384	94.4%	2871.3994	2871.267	46.1	308	2.5	21.2%	1	R.DADSFDKPAPSPASALPAASIPVNMNK.T	3
*	Mito_1_4.01209.01209.2	1.3311	0.0532	97.5%	1227.7546	1227.7096	36.7	361	3.017	36.4%	1	R.GQPIGATFVPLK.F	2

Reverse_YBR060C

620

71238

9.4

ORC2 SGDID:S000000264, Chr II from 362512-360650, reverse complement, Verified ORF, "Subunit of the origin recognition complex, which directs DNA replication by binding to replication origins and is also involved in transcriptional silencing; may be phosphorylated by Cdc28p"

	Filename	XCorr	DeltCN	Conf%	ObsM+H+	CalcM+H+	PPM	SpR	ZScore	Ion%	#	Sequence
*	Mito_1_44.15202.15202.4	1.6299	0.0403	98.8%	2579.5776	2575.5378	10.2	119	2.752	19.2%	1	K.KIRDTLEEQIKRPRGRKRPAK.S	4

contaminant_KERATIN14

638

65871

8.1

no description

	Filename	XCorr	DeltCN	Conf%	ObsM+H+	CalcM+H+	PPM	SpR	ZScore	Ion%	#	Sequence
*	Mito_1_4.01414.01414.3	1.7016	0.0798	96.7%	2353.0208	2353.0537	-14.0	36	3.072	26.2%	1	R.SQGFSGRSAVVSGSSRMS*CVAR.S	3

Reverse_YPL057C

382

44808

9.0

SUR1 SGDID:S000005978, Chr XVI from 453054-451906, reverse complement, Verified ORF, "Probable catalytic subunit of a mannosylinositol phosphorylceramide (MIPC) synthase, forms a complex with probable regulatory subunit Csg2p; function in sphingolipid biosynthesis is overlapping with that of Csh1p"

	Filename	XCorr	DeltCN	Conf%	ObsM+H+	CalcM+H+	PPM	SpR	ZScore	Ion%	#	Sequence
*	Mito_1_18.06452.06452.3	1.9809	0.0401	98.9%	1502.8646	1500.8937	-23.8	2	3.047	45.8%	1	R.LFAPFALLPDLKR.E	3

YMR308C

3.2%

1089

121030

4.7

PSE1 SGDID:S000004925, Chr XIII from 892220-888951, reverse complement, Verified ORF, "Karyopherin/importin that interacts with the nuclear pore complex; acts as the nuclear import receptor for specific proteins, including Pdr1p, Yap1p, Ste12p, and Aft1p"

	Filename	XCorr	DeltCN	Conf%	ObsM+H+	CalcM+H+	PPM	SpR	ZScore	Ion%	#	Sequence
*	Mito_1_30.10635.10635.5	3.8677	0.0945	93.8%	3776.9285	3769.996	-24.1	33	3.681	21.0%	1	R.AAGATLIPILLSCLLAATGTQNEELVLLWHKAS*SK.L	5

Reverse_YBR123C

3.1%

649

73554

5.4

TFC1 SGDID:S000000327, Chr II from 486685-484736, reverse complement, Verified ORF, "One of six subunits of the RNA polymerase III transcription initiation factor complex (TFIIIC); part of the TauA globular domain of TFIIIC that binds DNA at the BoxA promoter sites of tRNA and similar genes; human homolog is TFIIIC-63"

	Filename	XCorr	DeltCN	Conf%	ObsM+H+	CalcM+H+	PPM	SpR	ZScore	Ion%	#	Sequence
*	Mito_1_52.17979.17979.2	1.5673	0.0232	97.0%	2381.2327	2380.1377	38.5	37	3.192	28.9%	1	K.LCEELSEYFKSDSKTGPYVK.T	2

Reverse_YPL226W

1196

134330

5.9

NEW1 SGDID:S000006147, Chr XVI from 121767-125357, Verified ORF, "ATP binding cassette family member; Asn/Gln-rich rich region supports [NU+] prion formation, susceptibility to [PSI+] prion induction and aggregation of a fragment of the human Machado-Joseph Disease protein"

	Filename	XCorr	DeltCN	Conf%	ObsM+H+	CalcM+H+	PPM	SpR	ZScore	Ion%	#	Sequence
*	Mito_1_17.06088.06088.5	2.9584	0.0436	93.6%	4249.009	4249.0513	-10.0	234	2.719	17.9%	1	R.HGKLLRLNTKNLLMRSGYALSFDTNVIEIGEDEDAR.E	5

YLR035C

695

78248

8.1

MLH2 SGDID:S000004025, Chr XII from 214457-212370, reverse complement, Verified ORF, "Protein required for DNA mismatch repair in mitosis and meiosis; involved in the repair of mutational intermediates; forms a complex with Pms1p and Msh1p to repair mismatched DNA"

	Filename	XCorr	DeltCN	Conf%	ObsM+H+	CalcM+H+	PPM	SpR	ZScore	Ion%	#	Sequence
*	Mito_1_39.13490.13490.4	1.5424	0.0211	97.3%	2333.4585	2330.374	31.9	287	2.697	20.8%	1	R.YKVSCPVGTTVILRKLLGGLR.A	4

YDR419W

632

71515

8.2

RAD30 SGDID:S000002827, Chr IV from 1303164-1305062, Verified ORF, "DNA polymerase eta, involved in the predominantly error-free bypass replication of DNA lesions, catalyzes the efficient and accurate synthesis of DNA opposite cyclobutane pyrimidine dimers; homolog of human POLH and bacterial DinB proteins"

	Filename	XCorr	DeltCN	Conf%	ObsM+H+	CalcM+H+	PPM	SpR	ZScore	Ion%	#	Sequence
*	Mito_1_8.03132.03132.3	1.5865	0.0066	95.3%	2207.9807	2205.9385	16.1	54	2.505	26.4%	1	R.DSIKDILGYTTSCGLSSTK.N	3

Reverse_YLR177W

628

71265

8.7

YLR177W SGDID:S000004167, Chr XII from 511056-512942, Uncharacterized ORF, "Hypothetical protein"

	Filename	XCorr	DeltCN	Conf%	ObsM+H+	CalcM+H+	PPM	SpR	ZScore	Ion%	#	Sequence
*	Mito_1_43.14718.14718.2	1.9606	0.0065	99.2%	2311.34	2307.2974	12.7	4	2.787	36.1%	1	R.LVQKSPIILQT*LEIIDYLK.P	2

Reverse_YJL197W

2.9%

1254

143192

4.6

UBP12 SGDID:S000003733, Chr X from 63804-67568, Verified ORF, "Ubiquitin-specific protease present in the nucleus and cytoplasm that cleaves ubiquitin from ubiquitinated proteins"

	Filename	XCorr	DeltCN	Conf%	ObsM+H+	CalcM+H+	PPM	SpR	ZScore	Ion%	#	Sequence
*	Mito_1_41.14113.14113.4	3.7216	0.1096	97.0%	4312.037	4309.012	3.4	104	3.43	18.6%	2	K.ITKDWVTDVPLPLTVDNYPDFTIS*VNQCEPCYLTSK.Y	4

YMR016C

2.9%

785

85643

8.5

SOK2 SGDID:S000004618, Chr XIII from 305592-303235, reverse complement, Verified ORF, "Nuclear protein that plays a regulatory role in the cyclic AMP (cAMP)-dependent protein kinase (PKA) signal transduction pathway; negatively regulates pseudohyphal differentiation; homologous to several transcription factors"

	Filename	XCorr	DeltCN	Conf%	ObsM+H+	CalcM+H+	PPM	SpR	ZScore	Ion%	#	Sequence
*	Mito_1_50.17367.17367.2	1.7732	0.0069	99.2%	2501.0798	2497.024	17.0	1	2.724	31.8%	1	K.QNNPSNDSSSSSSSTGIKSISPR.T	2

Reverse_YMR100W

2.9%

620

72251

6.9

MUB1 SGDID:S000004706, Chr XIII from 466299-468161, Verified ORF, "Protein of unknown function, deletion causes multi-budding phenotype; has similarity to Aspergillus nidulans samB gene"

	Filename	XCorr	DeltCN	Conf%	ObsM+H+	CalcM+H+	PPM	SpR	ZScore	Ion%	#	Sequence
*	Mito_1_14.04930.04930.3	4.5088	0.0255	93.3%	2522.1758	2519.1553	4.1	66	3.091	35.3%	1	K.YVINTLEKKMKDYSWRRE.F	3

Reverse_YHR080C

1345

149679

8.7

YHR080C SGDID:S000001122, Chr VIII from 266840-262803, reverse complement, Uncharacterized ORF, "Hypothetical protein"

	Filename	XCorr	DeltCN	Conf%	ObsM+H+	CalcM+H+	PPM	SpR	ZScore	Ion%	#	Sequence
*	Mito_1_24.08397.08397.6	2.5924	0.0415	90.8%	4381.0264	4372.0605	-14.7	72	2.625	18.6%	1	K.ESAYEVGKIRISSQRGNEESPEIINVPTSSFSKSSSRR.L	6

YPR026W

1211

136920

5.4

ATH1 SGDID:S000006230, Chr XVI from 615376-619011, Verified ORF, "Acid trehalase required for utilization of extracellular trehalose"

	Filename	XCorr	DeltCN	Conf%	ObsM+H+	CalcM+H+	PPM	SpR	ZScore	Ion%	#	Sequence
*	Mito_1_46.15874.15874.4	2.6736	0.0808	92.3%	4129.915	4125.9683	-16.1	40	3.037	18.7%	1	R.NQSLIEILPSNRTTFTIDYDKLQVGDKGNTDWRK.T	4

YMR275C

976

109174

8.7

BUL1 SGDID:S000004888, Chr XIII from 818580-815650, reverse complement, Verified ORF, "Ubiquitin-binding component of the Rsp5p E3-ubiquitin ligase complex, functional homolog of Bul2p, disruption causes temperature-sensitive growth, overexpression causes missorting of amino acid permeases"

	Filename	XCorr	DeltCN	Conf%	ObsM+H+	CalcM+H+	PPM	SpR	ZScore	Ion%	#	Sequence
*	Mito_1_72.24623.24623.5	1.9566	0.0042	98.5%	3075.9153	3075.8557	19.4	36	2.754	17.8%	1	K.ERTGLILVKAKIPKQGLPYWAPSLLRK.T	5

YGL075C

387

44585

8.3

MPS2 SGDID:S000003043, Chr VII from 368091-366928, reverse complement, Verified ORF, "Essential membrane protein localized at the nuclear envelope and spindle pole body (SPB), required for insertion of the newly duplicated SPB into the nuclear envelope; potentially phosphorylated by Cdc28p"

	Filename	XCorr	DeltCN	Conf%	ObsM+H+	CalcM+H+	PPM	SpR	ZScore	Ion%	#	Sequence
*	Mito_1_14.05119.05119.2	1.9962	0.2067	100.0%	1336.7177	1336.7235	-4.4	95	4.386	55.0%	2	K.LTES*PIKLLSR.N	2

YDR138W

2.7%

752

87829

5.3

HPR1 SGDID:S000002545, Chr IV from 730573-732831, Verified ORF, "Subunit of THO/TREX, related complexes that couple transcription elongation with mitotic recombination and elongation with mRNA metabolism and export, subunit of an RNA Pol II complex; regulates lifespan; similar to Top1p"

	Filename	XCorr	DeltCN	Conf%	ObsM+H+	CalcM+H+	PPM	SpR	ZScore	Ion%	#	Sequence
*	Mito_1_60.20542.20542.2	1.6189	0.0804	96.2%	2382.0935	2382.0261	28.3	17	2.894	28.9%	1	K.WESKISSETSGGEAKDEIIR.Q	2

Reverse_YOR019W

2.7%

730

83366

9.7

YOR019W SGDID:S000005545, Chr XV from 368126-370318, Uncharacterized ORF, "Hypothetical protein"

	Filename	XCorr	DeltCN	Conf%	ObsM+H+	CalcM+H+	PPM	SpR	ZScore	Ion%	#	Sequence
*	Mito_1_50.17202.17202.2	1.8276	0.0646	94.7%	2398.087	2394.1797	-44.3	195	2.897	28.9%	1	R.KSPVVFTPIPYSVPFVDTLK.K	2

YPL158C

758

84846

6.7

YPL158C SGDID:S000006079, Chr XVI from 254309-252033, reverse complement, Uncharacterized ORF, "Hypothetical protein"

	Filename	XCorr	DeltCN	Conf%	ObsM+H+	CalcM+H+	PPM	SpR	ZScore	Ion%	#	Sequence
*	Mito_1_3.01055.01055.5	2.5415	0.1302	96.2%	2375.0894	2368.0364	12.4	38	3.302	28.9%	1	R.YSSSVSSKSSSSRCSLKRSK.A	5

YDR118W

652

75256

5.8

	Filename	XCorr	DeltCN	Conf%	ObsM+H+	CalcM+H+	PPM	SpR	ZScore	Ion%	#	Sequence
*	Mito_1_16.05798.05798.2	2.7975	0.2017	100.0%	2075.9841	2075.966	8.7	90	4.57	40.6%	1	F.LSVDNIENENSLKSIIK.V	2

Reverse_YCR038C

642

75046

7.8

BUD5 SGDID:S000000634, Chr III from 199544-197616, reverse complement, Verified ORF, "GTP/GDP exchange factor for Rsr1p (Bud1p) required for both axial and bipolar budding patterns; mutants exhibit random budding in all cell types"

	Filename	XCorr	DeltCN	Conf%	ObsM+H+	CalcM+H+	PPM	SpR	ZScore	Ion%	#	Sequence
*	Mito_1_39.13560.13560.2	1.9463	0.0027	98.4%	2122.0486	2120.094	-24.6	157	3.025	31.2%	1	K.QQLY*QAFAVIKTIQNFK.Q	2

YBR148W

609

70175

7.1

YSW1 SGDID:S000000352, Chr II from 537870-539699, Verified ORF, "Protein expressed specifically in spores"

	Filename	XCorr	DeltCN	Conf%	ObsM+H+	CalcM+H+	PPM	SpR	ZScore	Ion%	#	Sequence
*	Mito_1_11.03993.03993.2	4.0588	0.1444	100.0%	1974.9238	1972.8899	13.8	8	4.083	50.0%	1	V.Y*GNDLKENDDNIIKIE.T	2

Reverse_YDL079C

501

57819

8.0

MRK1 SGDID:S000002237, Chr IV from 314748-314337,314044-312951, reverse complement, Verified ORF, "Glycogen synthase kinase 3 (GSK-3) homolog; one of four GSK-3 homologs in S. cerevisiae that function to activate Msn2p-dependent transcription of stress responsive genes and that function in protein degradation"

	Filename	XCorr	DeltCN	Conf%	ObsM+H+	CalcM+H+	PPM	SpR	ZScore	Ion%	#	Sequence
*	Mito_1_31.10833.10833.3	2.0807	0.2566	93.8%	1576.773	1574.7784	-7.7	16	4.526	41.7%	1	N.TAGFMLEPARYYR.S	3

YMR027W

470

54129

5.6

YMR027W SGDID:S000004629, Chr XIII from 325876-327288, Uncharacterized ORF, "High level expression reduced Ty3 Transposition"

	Filename	XCorr	DeltCN	Conf%	ObsM+H+	CalcM+H+	PPM	SpR	ZScore	Ion%	#	Sequence
*	Mito_1_9.03322.03322.2	1.6404	0.0154	99.2%	1518.7734	1518.7465	17.8	320	3.378	40.9%	1	K.YHGS*ILHKDLQK.S	2

YGR116W

1451

168291

5.0

SPT6 SGDID:S000003348, Chr VII from 720413-724768, Verified ORF, "Essential protein that interacts with histones and is involved in nucleosome disassembly and reassembly during transcription elongation"

	Filename	XCorr	DeltCN	Conf%	ObsM+H+	CalcM+H+	PPM	SpR	ZScore	Ion%	#	Sequence
*	Mito_1_46.15835.15835.3	2.8229	0.044	99.0%	4350.116	4346.064	8.9	335	2.503	15.7%	1	K.QIVDSRGHTIPIIYVEDEVAIRYQNSERAAQEFPNK.P	3

Reverse_YDR074W

896

102976

8.1

TPS2 SGDID:S000002481, Chr IV from 593889-596579, Verified ORF, "Phosphatase subunit of the trehalose-6-phosphate synthase/phosphatase complex, which synthesizes the storage carbohydrate trehalose; expression is induced by stress conditions and repressed by the Ras-cAMP pathway"

	Filename	XCorr	DeltCN	Conf%	ObsM+H+	CalcM+H+	PPM	SpR	ZScore	Ion%	#	Sequence
*	Mito_1_73.24930.24930.2	1.0177	0.091	96.6%	2600.5103	2597.4133	33.4	60	3.162	11.9%	1	K.PLKESIGKLMDQPKGHQHWVLR.K	2

YNL161W

756

86946

7.9

CBK1 SGDID:S000005105, Chr XIV from 332599-334869, Verified ORF, "Serine/threonine protein kinase that regulates cell morphogenesis pathways; involved in cell wall biosynthesis, apical growth, proper mating projection morphology, bipolar bud site selection in diploid cells, and cell separation"

	Filename	XCorr	DeltCN	Conf%	ObsM+H+	CalcM+H+	PPM	SpR	ZScore	Ion%	#	Sequence
*	Mito_1_60.20750.20750.3	2.8504	0.0254	98.9%	2269.2285	2268.3298	-46.1	2	2.955	34.7%	1	R.LRRTRLSLEDFHTVKVIGK.G	3

YDR333C

723

83426

5.7

YDR333C SGDID:S000002741, Chr IV from 1135424-1133253, reverse complement, Uncharacterized ORF, "Hypothetical protein"

	Filename	XCorr	DeltCN	Conf%	ObsM+H+	CalcM+H+	PPM	SpR	ZScore	Ion%	#	Sequence
*	Mito_1_25.08756.08756.2	1.4436	0.0077	98.5%	2102.3928	2100.32	31.4	94	3.383	26.5%	1	K.RITLASKSSRRKKNKKAK.R	2

YLL003W

946

112978

9.8

SFI1 SGDID:S000003926, Chr XII from 143200-146040, Verified ORF, "Centrin (Cdc31p)-binding protein required for spindle pole body (SPB) duplication, localizes to the half-bridge of the SPB, required for progression through G(2)-M transition, has similarity to Xenopus laevis XCAP-C"

	Filename	XCorr	DeltCN	Conf%	ObsM+H+	CalcM+H+	PPM	SpR	ZScore	Ion%	#	Sequence
*	Mito_1_61.20865.20865.2	1.1264	0.0274	92.3%	2796.6382	2794.4934	49.4	7	2.685	25.0%	1	R.TWRKRIQYGKISSEHVKTAFCAK.Y	2

YHR120W

959

109408

8.7

MSH1 SGDID:S000001162, Chr VIII from 349577-352456, Verified ORF, "DNA-binding protein of the mitochondria involved in repair of mitochondrial DNA, has ATPase activity and binds to DNA mismatches; has homology to E. coli MutS; transcription is induced during meiosis"

	Filename	XCorr	DeltCN	Conf%	ObsM+H+	CalcM+H+	PPM	SpR	ZScore	Ion%	#	Sequence
*	Mito_1_16.05819.05819.4	2.6288	0.091	92.3%	2738.354	2735.3892	-16.5	374	3.423	24.2%	1	R.PISRVSLRYSSTDTAQPKISKLK.I	4

YCR057C

923

103983

5.1

PWP2 SGDID:S000000653, Chr III from 223223-220452, reverse complement, Verified ORF, "Conserved 90S pre-ribosomal component essential for proper endonucleolytic cleavage of the 35 S rRNA precursor at A0, A1, and A2 sites; contains eight WD-repeats; PWP2 deletion leads to defects in cell cycle and bud morphogenesis"

	Filename	XCorr	DeltCN	Conf%	ObsM+H+	CalcM+H+	PPM	SpR	ZScore	Ion%	#	Sequence
*	Mito_1_8.03143.03143.3	3.3635	0.1057	96.8%	2339.0432	2338.024	6.8	4	3.628	29.8%	2	K.KMTEAGSLDLIDDAGENSDLED.R	3

Reverse_YJR107W

328

37261

6.1

YJR107W SGDID:S000003868, Chr X from 627254-628240, Uncharacterized ORF, "Putative protein of unknown function; has sequence or structural similarity to lipases"

	Filename	XCorr	DeltCN	Conf%	ObsM+H+	CalcM+H+	PPM	SpR	ZScore	Ion%	#	Sequence
*	Mito_1_9.03533.03533.2	1.6382	0.0541	98.0%	949.58905	949.5466	44.7	262	3.288	50.0%	1	R.FGDKLTLR.N	2

YJL074C

1230

141336

5.8

SMC3 SGDID:S000003610, Chr X from 302765-299073, reverse complement, Verified ORF, "Subunit of the multiprotein cohesin complex required for sister chromatid cohesion in mitotic cells; also required, with Rec8p, for cohesion and recombination during meiosis; phylogenetically conserved SMC chromosomal ATPase family member"

	Filename	XCorr	DeltCN	Conf%	ObsM+H+	CalcM+H+	PPM	SpR	ZScore	Ion%	#	Sequence
*	Mito_1_65.22499.22499.3	1.8649	0.0721	94.2%	3193.8574	3193.7231	42.0	374	2.934	17.6%	1	K.IVALTNAKDKERLQLLEDVVGAKS*FEVK.L	3

Reverse_YCL024W

1037

116475

8.7

KCC4 SGDID:S000000529, Chr III from 79161-82274, Verified ORF, "Protein kinase of the bud neck involved in the septin checkpoint, associates with septin proteins, negatively regulates Swe1p by phosphorylation, shows structural homology to bud neck kinases Gin4p and Hsl1p"

	Filename	XCorr	DeltCN	Conf%	ObsM+H+	CalcM+H+	PPM	SpR	ZScore	Ion%	#	Sequence
*	Mito_1_53.18202.18202.3	2.0998	0.0197	93.9%	2730.1729	2724.2793	-46.4	109	2.772	23.9%	1	K.SPERQYLGLGSANKGQFSSLSPLK.V	3

Reverse_YML109W

942

105496

5.4

ZDS2 SGDID:S000004577, Chr XIII from 51640-54468, Verified ORF, "Protein that interacts with silencing proteins at the telomere, involved in transcriptional silencing; paralog of Zds1p"

	Filename	XCorr	DeltCN	Conf%	ObsM+H+	CalcM+H+	PPM	SpR	ZScore	Ion%	#	Sequence
*	Mito_1_16.05839.05839.4	2.7105	0.0084	97.3%	2684.4011	2684.5254	-46.3	22	3.019	27.0%	1	K.CTGNHQKRKFLKALRKELSNKK.H	4

YNL059C

755

87560

5.5

ARP5 SGDID:S000005004, Chr XIV from 514936-512669, reverse complement, Verified ORF, "Nuclear actin-related protein involved in chromatin remodeling, component of chromatin-remodeling enzyme complexes"

	Filename	XCorr	DeltCN	Conf%	ObsM+H+	CalcM+H+	PPM	SpR	ZScore	Ion%	#	Sequence
*	Mito_1_59.20187.20187.2	1.0283	0.1377	98.5%	2179.5325	2177.481	20.6	15	3.444	21.9%	1	R.LKLNKLIKRRKEKLKLR.D	2

YOR081C

749

84716

9.1

TGL5 SGDID:S000005607, Chr XV from 479189-476940, reverse complement, Verified ORF, "Triacylglycerol lipase involved in TAG mobilization; localizes to lipid particles; potential Cdc28p substrate"

	Filename	XCorr	DeltCN	Conf%	ObsM+H+	CalcM+H+	PPM	SpR	ZScore	Ion%	#	Sequence
*	Mito_1_28.09723.09723.3	1.4853	0.0511	98.7%	1764.9622	1763.0173	-35.1	3	2.845	34.4%	1	K.ANSLSFAIGASSLRLKK.S	3

Reverse_YFL016C

511

55561

9.2

MDJ1 SGDID:S000001878, Chr VI from 106230-104695, reverse complement, Verified ORF, "Protein involved in folding of mitochondrially synthesized proteins in the mitochondrial matrix; localizes to the mitochondrial inner membrane; member of the DnaJ family of molecular chaperones"

	Filename	XCorr	DeltCN	Conf%	ObsM+H+	CalcM+H+	PPM	SpR	ZScore	Ion%	#	Sequence
*	Mito_1_2.00483.00483.3	2.3707	0.0566	99.4%	1518.7728	1515.7753	-8.2	160	4.174	40.9%	1	K.VVIKY*QVKMDGR.I	3

YOR141C

881

100209

4.8

ARP8 SGDID:S000005667, Chr XV from 592587-589942, reverse complement, Verified ORF, "Nuclear actin-related protein involved in chromatin remodeling, component of chromatin-remodeling enzyme complexes"

	Filename	XCorr	DeltCN	Conf%	ObsM+H+	CalcM+H+	PPM	SpR	ZScore	Ion%	#	Sequence
*	Mito_1_59.20447.20447.2	1.8917	0.216	98.5%	2055.3398	2051.2375	43.2	3	4.627	27.8%	1	K.LDPAKAPPGKKVPLHLLEK.R	2

Reverse_YBR237W

849

96359

8.1

PRP5 SGDID:S000000441, Chr II from 691964-694513, Verified ORF, "RNA helicase in the DEAD-box family, necessary for prespliceosome formation, bridges U1 and U2 snRNPs and enables stable U2 snRNP association with intron RNA"

	Filename	XCorr	DeltCN	Conf%	ObsM+H+	CalcM+H+	PPM	SpR	ZScore	Ion%	#	Sequence
*	Mito_1_55.18805.18805.2	1.5311	0.0432	99.0%	2302.2769	2301.2522	9.3	272	2.817	27.8%	1	R.KDNKKLELDKNQAEERKSK.I	2

Reverse_YOL152W

629

71997

9.1

FRE7 SGDID:S000005512, Chr XV from 40747-42636, Verified ORF, "Putative ferric reductase with similarity to Fre2p; expression induced by low copper levels"

	Filename	XCorr	DeltCN	Conf%	ObsM+H+	CalcM+H+	PPM	SpR	ZScore	Ion%	#	Sequence
*	Mito_1_29.10148.10148.3	1.5608	0.0019	98.5%	1537.9487	1536.8856	38.9	312	2.817	30.8%	1	K.RSTALVRATYIASK.S	3

YDR129C

642

71773

5.5

SAC6 SGDID:S000002536, Chr IV from 715374-715354,715242-713335, reverse complement, Verified ORF, "Fimbrin, actin-bundling protein; cooperates with Scp1p (calponin/transgelin) in the organization and maintenance of the actin cytoskeleton"

	Filename	XCorr	DeltCN	Conf%	ObsM+H+	CalcM+H+	PPM	SpR	ZScore	Ion%	#	Sequence
*	Mito_1_32.11317.11317.2	1.5323	0.0314	99.0%	1579.9698	1577.9335	18.8	250	3.038	26.9%	1	R.LIITFIASLMTLNK.-	2

YGR246C

596

66907

6.9

BRF1 SGDID:S000003478, Chr VII from 984277-982487, reverse complement, Verified ORF, "TFIIIB B-related factor, one of three subunits of RNA polymerase III transcription initiation factor TFIIIB, binds TFIIIC and TBP and recruits RNA pol III to promoters, amino-terminal half is homologous to TFIIB"

	Filename	XCorr	DeltCN	Conf%	ObsM+H+	CalcM+H+	PPM	SpR	ZScore	Ion%	#	Sequence
*	Mito_1_28.09914.09914.3	1.4669	0.0601	98.9%	1493.9232	1490.8801	22.1	440	2.944	29.2%	1	K.NTKAAKLSVQKFR.E	3

YIL026C

1150

133009

5.1

IRR1 SGDID:S000001288, Chr IX from 307927-304475, reverse complement, Verified ORF, "Subunit of the cohesin complex, which is required for sister chromatid cohesion during mitosis and meiosis and interacts with centromeres and chromosome arms, essential for viability"

	Filename	XCorr	DeltCN	Conf%	ObsM+H+	CalcM+H+	PPM	SpR	ZScore	Ion%	#	Sequence
*	Mito_1_17.06154.06154.5	2.4731	0.0525	96.2%	2736.3665	2732.3406	4.6	154	3.675	25.0%	1	K.LESTIAETQGSKVVIDSIIDNIVK.L	5

YMR231W

1029

117477

5.8

PEP5 SGDID:S000004844, Chr XIII from 733544-736633, Verified ORF, "Peripheral vacuolar membrane protein required for protein trafficking and vacuole biogenesis; forms complex with Pep3p that promotes vesicular docking/fusion reactions in conjunction with SNARE proteins, also interacts with Pep7p"

	Filename	XCorr	DeltCN	Conf%	ObsM+H+	CalcM+H+	PPM	SpR	ZScore	Ion%	#	Sequence
*	Mito_1_8.03198.03198.3	1.9647	0.0677	98.5%	2579.2202	2578.1895	10.6	170	2.765	25.0%	1	K.TKIDIASFANDNPEMDLLST*FR.A	3

YIL130W

964

108781

6.2

YIL130W SGDID:S000001392, Chr IX from 102782-105676, Uncharacterized ORF, "Proposed transcriptional activator, member of the Gal4p family of zinc cluster proteins"

	Filename	XCorr	DeltCN	Conf%	ObsM+H+	CalcM+H+	PPM	SpR	ZScore	Ion%	#	Sequence
*	Mito_1_62.21391.21391.3	1.8151	0.0045	93.9%	2730.8484	2728.9578	-42.5	17	2.936	23.7%	1	K.CDGQQPCIHCTVYSYECTYK.K	3

YDL176W

708

81465

6.7

YDL176W SGDID:S000002335, Chr IV from 142098-144224, Uncharacterized ORF, "Hypothetical protein"

	Filename	XCorr	DeltCN	Conf%	ObsM+H+	CalcM+H+	PPM	SpR	ZScore	Ion%	#	Sequence
*	Mito_1_61.20952.20952.2	1.856	0.1421	100.0%	1719.8649	1715.8857	-19.9	11	3.492	42.9%	1	K.NDRLALVPSERGCTK.V	2

YPR042C

2.0%

1075

119508

8.8

PUF2 SGDID:S000006246, Chr XVI from 653659-650432, reverse complement, Verified ORF, "Member of the PUF protein family, which is defined by the presence of Pumilio homology domains that confer RNA binding activity; preferentially binds mRNAs encoding membrane-associated proteins"

	Filename	XCorr	DeltCN	Conf%	ObsM+H+	CalcM+H+	PPM	SpR	ZScore	Ion%	#	Sequence
*	Mito_1_55.19033.19033.3	2.1378	0.0835	96.1%	2520.2354	2515.1477	28.1	105	3.314	26.2%	1	R.VSSDSFTVATPLSLQSTTTRTR.T	3

YPL016W

1.9%

1314

147937

8.8

SWI1 SGDID:S000005937, Chr XVI from 521011-524955, Verified ORF, "One of 11 subunits of the SWI/SNF chromatin remodeling complex that regulates transcription by remodeling chromosomes; required for transcription of many genes, including ADH1, ADH2, GAL1, HO, INO1 and SUC2"

	Filename	XCorr	DeltCN	Conf%	ObsM+H+	CalcM+H+	PPM	SpR	ZScore	Ion%	#	Sequence
*	Mito_1_45.15647.15647.5	1.8986	0.0287	98.6%	3198.956	3192.8733	19.6	90	3.144	20.8%	1	K.LRQQYEIELKKLPKVYKRSIVRNYK.P	5

YNL317W

1.9%

465

53143

8.1

PFS2 SGDID:S000005261, Chr XIV from 40618-42015, Verified ORF, "Integral subunit of the pre-mRNA cleavage and polyadenylation factor (CPF) complex; plays an essential role in mRNA 3'-end formation by bridging different processing factors and thereby promoting the assembly of the processing complex"

	Filename	XCorr	DeltCN	Conf%	ObsM+H+	CalcM+H+	PPM	SpR	ZScore	Ion%	#	Sequence
*	Mito_1_9.03522.03522.2	1.4222	0.0545	96.6%	949.5891	946.539	42.2	22	3.249	62.5%	1	K.GNLLMAISK.D	2

YIR006C

1.8%

1480

160266

5.3

PAN1 SGDID:S000001445, Chr IX from 369905-365463, reverse complement, Verified ORF, "Part of actin cytoskeleton-regulatory complex Pan1p-Sla1p-End3p, associates with actin patches on the cell cortex; promotes protein-protein interactions essential for endocytosis; previously thought to be a subunit of poly(A) ribonuclease"

	Filename	XCorr	DeltCN	Conf%	ObsM+H+	CalcM+H+	PPM	SpR	ZScore	Ion%	#	Sequence
*	Mito_1_43.14749.14749.5	1.9329	0.0336	97.3%	2834.7751	2829.6448	40.1	183	2.852	20.0%	1	K.PIPNVLPSSLIPSSTKLLDNLKNQLK.T	5

YML075C

1.8%

1054

115625

8.0

HMG1 SGDID:S000004540, Chr XIII from 118898-115734, reverse complement, Verified ORF, "One of two isozymes of HMG-CoA reductase that catalyzes the conversion of HMG-CoA to mevalonate, which is a rate-limiting step in sterol biosynthesis; localizes to the nuclear envelope; overproduction induces the formation of karmellae"

	Filename	XCorr	DeltCN	Conf%	ObsM+H+	CalcM+H+	PPM	SpR	ZScore	Ion%	#	Sequence
*	Mito_1_43.14715.14715.2	1.4945	0.011	94.1%	2309.349	2305.246	38.8	31	2.413	27.8%	1	R.IEDMVLLLLRNVS*VAIRDR.F	2

YJL039C

1683

191534

5.3

NUP192 SGDID:S000003576, Chr X from 373715-368664, reverse complement, Verified ORF, "Essential structural subunit of the nuclear pore complex (NPC), localizes to the nuclear periphery of nuclear pores, homologous to human p205"

	Filename	XCorr	DeltCN	Conf%	ObsM+H+	CalcM+H+	PPM	SpR	ZScore	Ion%	#	Sequence
*	Mito_1_66.22716.22716.3	2.5623	0.0951	99.1%	3265.4504	3263.4854	-12.7	10	3.48	24.1%	1	K.IKDAEEDSLLSGEDLTLDDISLKADLER.F	3

Reverse_YDL019C

1283

145795

6.8

OSH2 SGDID:S000002177, Chr IV from 421511-417660, reverse complement, Verified ORF, "Member of an oxysterol-binding protein family with seven members in S. cerevisiae; family members have overlapping, redundant functions in sterol metabolism and collectively perform a function essential for viability"

	Filename	XCorr	DeltCN	Conf%	ObsM+H+	CalcM+H+	PPM	SpR	ZScore	Ion%	#	Sequence
*	Mito_1_23.08106.08106.3	3.778	0.0807	98.2%	2744.3857	2741.2793	35.1	1	3.067	32.1%	1	K.TKEKVQSEKDEAKFNKLSQDTK.P	3

YJL129C

1235

141073

8.5

TRK1 SGDID:S000003665, Chr X from 177224-173517, reverse complement, Verified ORF, "Component of the Trk1p-Trk2p potassium transport system; 180 kDa high affinity potassium transporter"

	Filename	XCorr	DeltCN	Conf%	ObsM+H+	CalcM+H+	PPM	SpR	ZScore	Ion%	#	Sequence
*	Mito_1_37.12837.12837.2	1.6928	0.0422	99.0%	2398.458	2398.4116	19.3	232	3.382	22.5%	1	K.LVIIAMLIRGKNRGLPYSLDR.A	2

YOR198C

470

54639

9.2

BFR1 SGDID:S000005724, Chr XV from 720065-718653, reverse complement, Verified ORF, "Component of mRNP complexes associated with polyribosomes; implicated in secretion and nuclear segregation; multicopy suppressor of BFA (Brefeldin A) sensitivity"

	Filename	XCorr	DeltCN	Conf%	ObsM+H+	CalcM+H+	PPM	SpR	ZScore	Ion%	#	Sequence
*	Mito_1_9.03360.03360.2	1.6773	0.1185	100.0%	983.51306	983.5156	-2.6	56	3.907	71.4%	1	K.HEELLSKQ.E	2

Reverse_YMR265C

461

54106

9.0

YMR265C SGDID:S000004878, Chr XIII from 797924-796539, reverse complement, Uncharacterized ORF, "Hypothetical protein"

	Filename	XCorr	DeltCN	Conf%	ObsM+H+	CalcM+H+	PPM	SpR	ZScore	Ion%	#	Sequence
*	Mito_1_71.24467.24467.2	1.0546	0.0708	95.1%	945.6432	942.59827	36.9	15	2.966	50.0%	1	K.IVEISLLR.H	2

Reverse_YCR033W

1.6%

1226

138397

9.1

SNT1 SGDID:S000000629, Chr III from 186484-190164, Verified ORF, "Subunit of the Set3C deacetylase complex; putative DNA-binding protein"

	Filename	XCorr	DeltCN	Conf%	ObsM+H+	CalcM+H+	PPM	SpR	ZScore	Ion%	#	Sequence
*	Mito_1_61.21053.21053.2	1.253	0.0344	92.7%	2249.5527	2246.4321	49.1	13	3.001	21.1%	1	K.KIKSIIKTLILGTAQQHILK.N	2

Reverse_YLR148W

1.5%

918

107398

7.0

PEP3 SGDID:S000004138, Chr XII from 434642-437398, Verified ORF, "Vacuolar peripheral membrane protein that promotes vesicular docking/fusion reactions in conjunction with SNARE proteins, required for vacuolar biogenesis, forms complex with Pep5p that mediates protein transport to the vacuole"

	Filename	XCorr	DeltCN	Conf%	ObsM+H+	CalcM+H+	PPM	SpR	ZScore	Ion%	#	Sequence
*	Mito_1_27.09380.09380.2	1.2841	0.0173	96.1%	1723.1246	1722.0612	34.9	10	3.233	30.8%	1	K.MSLLLHKAIKLWLR.K	2

YOR038C

1.5%

875

98445

8.3

HIR2 SGDID:S000005564, Chr XV from 405387-402760, reverse complement, Verified ORF, "Non-essential transcriptional corepressor involved in the cell cycle-regulated transcription of histone H2A, H2B, H3, and H4 genes; recruits Swi-Snf complexes to histone gene promoters; promotes heterochromatic gene silencing with Asf1p"

	Filename	XCorr	DeltCN	Conf%	ObsM+H+	CalcM+H+	PPM	SpR	ZScore	Ion%	#	Sequence
*	Mito_1_11.04105.04105.3	1.8918	0.0093	99.8%	1545.868	1541.858	-2.2	190	3.155	37.5%	1	K.ILIACGDIRQVQR.V	3

Reverse_YDR213W

1.4%

913

100339

6.0

UPC2 SGDID:S000002621, Chr IV from 889746-892487, Verified ORF, "Sterol regulatory element binding protein, induces transcription of sterol transport and biosynthetic genes; involved in the anaerobic induction of DAN/TIR mannoproteins and seripauperins; binucleate zinc cluster protein; Ecm22p homolog"

	Filename	XCorr	DeltCN	Conf%	ObsM+H+	CalcM+H+	PPM	SpR	ZScore	Ion%	#	Sequence
*	Mito_1_13.04884.04884.3	2.9122	0.0091	99.1%	1599.8445	1597.8809	-26.9	2	3.189	45.8%	1	R.LIFDGQNKERHLK.D	3

YNL267W

1.3%

1066

119923

6.5

PIK1 SGDID:S000005211, Chr XIV from 140879-144079, Verified ORF, "Phosphatidylinositol 4-kinase; catalyzes first step in the biosynthesis of phosphatidylinositol-4,5-biphosphate; may control cytokineses through the actin cytoskeleton"

	Filename	XCorr	DeltCN	Conf%	ObsM+H+	CalcM+H+	PPM	SpR	ZScore	Ion%	#	Sequence
*	Mito_1_39.13449.13449.3	2.8927	0.0397	99.7%	1815.9277	1813.9012	10.9	9	2.9	42.3%	1	K.KFVELTKSSFKALR.K	3

Reverse_YEL055C

1.3%

1022

115894

5.3

POL5 SGDID:S000000781, Chr V from 51539-48471, reverse complement, Verified ORF, "Protein with sequence similarity to the human MybBP1A and weak sequence similar to B-type DNA polymerases, not required for chromosomal DNA replication; required for the synthesis of rRNA"

	Filename	XCorr	DeltCN	Conf%	ObsM+H+	CalcM+H+	PPM	SpR	ZScore	Ion%	#	Sequence
*	Mito_1_15.05475.05475.2	1.6848	0.0089	96.9%	1496.7228	1496.758	-23.6	169	3.555	37.5%	1	R.ASNRDSS*LGKILR.N	2

YDR186C

1.3%

877

98331

5.4

YDR186C SGDID:S000002594, Chr IV from 835487-832854, reverse complement, Uncharacterized ORF, "Hypothetical protein"

	Filename	XCorr	DeltCN	Conf%	ObsM+H+	CalcM+H+	PPM	SpR	ZScore	Ion%	#	Sequence
*	Mito_1_6.02199.02199.3	2.0739	0.1344	97.0%	1300.5898	1300.5529	28.4	180	3.922	35.0%	1	K.GDDQSNT*SLKR.N	3

YJL109C

1.2%

1769

200080

6.5

UTP10 SGDID:S000003645, Chr X from 217226-211917, reverse complement, Verified ORF, "Nucleolar protein, component of the small subunit (SSU) processome containing the U3 snoRNA that is involved in processing of pre-18S rRNA"

	Filename	XCorr	DeltCN	Conf%	ObsM+H+	CalcM+H+	PPM	SpR	ZScore	Ion%	#	Sequence
*	Mito_1_51.17512.17512.2	1.4499	0.0499	99.2%	2742.5928	2739.528	19.9	8	3.172	23.8%	1	R.RNLRLKVYSVLLDET*SDKKLIR.N	2

Reverse_YJL020C

1.2%

1157

128296

5.3

BBC1 SGDID:S000003557, Chr X from 402326-398853, reverse complement, Verified ORF, "Protein possibly involved in assembly of actin patches; interacts with an actin assembly factor Las17p and with the SH3 domains of Type I myosins Myo3p and Myo5p; localized predominantly to cortical actin patches"

	Filename	XCorr	DeltCN	Conf%	ObsM+H+	CalcM+H+	PPM	SpR	ZScore	Ion%	#	Sequence
*	Mito_1_32.11136.11136.3	1.7999	0.1479	99.6%	1552.9673	1551.9833	-12.5	103	3.735	30.8%	1	R.IVLIDGPKIKQLSK.M	3

Reverse_YNL297C

1636

186835

5.7

MON2 SGDID:S000005241, Chr XIV from 76583-71673, reverse complement, Verified ORF, "Peripheral membrane protein with a role in endocytosis and vacuole integrity, interacts with Arl1p and localizes to the endosome; member of the Sec7p family of proteins"

	Filename	XCorr	DeltCN	Conf%	ObsM+H+	CalcM+H+	PPM	SpR	ZScore	Ion%	#	Sequence
*	Mito_1_55.18873.18873.3	2.2225	0.0556	95.8%	2244.2747	2240.195	29.5	42	3.512	29.4%	1	R.LKPIPARGILYEDS*IYRR.L	3

YFL008W

1225

141280

6.5

SMC1 SGDID:S000001886, Chr VI from 119424-123101, Verified ORF, "Subunit of the multiprotein cohesin complex, essential protein involved in chromosome segregation and in double-strand DNA break repair; SMC chromosomal ATPase family member, binds DNA with a preference for DNA with secondary structure"

	Filename	XCorr	DeltCN	Conf%	ObsM+H+	CalcM+H+	PPM	SpR	ZScore	Ion%	#	Sequence
*	Mito_1_9.03461.03461.2	3.4143	0.136	100.0%	1770.9274	1769.9796	-31.4	41	3.609	50.0%	2	K.QKSKLDYIFKDKEK.L	2

Reverse_YDL035C

961

110709

7.1

GPR1 SGDID:S000002193, Chr IV from 392054-389169, reverse complement, Verified ORF, "Plasma membrane G protein coupled receptor (GPCR) that interacts with the heterotrimeric G protein alpha subunit, Gpa2p, and with Plc1p; sensor that integrates nutritional signals with the modulation of cell fate via PKA and cAMP synthesis"

	Filename	XCorr	DeltCN	Conf%	ObsM+H+	CalcM+H+	PPM	SpR	ZScore	Ion%	#	Sequence
*	Mito_1_27.09437.09437.2	1.0426	0.0127	94.6%	1386.8351	1382.8702	-35.0	41	3.1	45.0%	1	R.LNKQIQARRKK.M	2

Reverse_YIL002C

946

108430

6.7

INP51 SGDID:S000001264, Chr IX from 353428-350588, reverse complement, Verified ORF, "Phosphatidylinositol 4,5-bisphosphate 5-phosphatase, synaptojanin-like protein with an N-terminal Sac1 domain, plays a role in phosphatidylinositol 4,5-bisphosphate homeostasis and in endocytosis; null mutation confers cold-tolerant growth"

	Filename	XCorr	DeltCN	Conf%	ObsM+H+	CalcM+H+	PPM	SpR	ZScore	Ion%	#	Sequence
*	Mito_1_9.03332.03332.2	1.4552	0.1131	96.1%	1110.4612	1110.4939	-29.5	87	3.955	61.1%	1	R.QQSS*AGPISR.L	2

YKL182W

2051

228689

5.9

FAS1 SGDID:S000001665, Chr XI from 100676-106831, Verified ORF, "Beta subunit of fatty acid synthetase, which catalyzes the synthesis of long-chain saturated fatty acids; contains acetyltransacylase, dehydratase, enoyl reductase, malonyl transacylase, and palmitoyl transacylase activities"

	Filename	XCorr	DeltCN	Conf%	ObsM+H+	CalcM+H+	PPM	SpR	ZScore	Ion%	#	Sequence
*	Mito_1_37.12891.12891.3	3.7929	0.4039	100.0%	2376.2258	2373.2185	-1.2	1	7.043	33.8%	2	K.SLSLEEVEGHLFEIIDEASKK.S	3

YKL101W

1518

169592

9.3

HSL1 SGDID:S000001584, Chr XI from 248564-253120, Verified ORF, "Nim1p-related protein kinase that regulates the morphogenesis and septin checkpoints; associates with the assembled septin filament; required along with Hsl7p for bud neck recruitment, phosphorylation, and degradation of Swe1p"

	Filename	XCorr	DeltCN	Conf%	ObsM+H+	CalcM+H+	PPM	SpR	ZScore	Ion%	#	Sequence
*	Mito_1_30.10355.10355.3	1.615	0.0743	98.7%	1599.0016	1592.9231	36.5	25	3.499	30.4%	1	K.TSHVPKGRPSSLAKK.A	3

YGL092W

1317

145661

5.7

NUP145 SGDID:S000003060, Chr VII from 337909-341862, Verified ORF, "Essential nucleoporin, catalyzes its own cleavage in vivo to generate a C-terminal fragment that assembles into the Nup84p subcomplex of the nuclear pore complex, and an N-terminal fragment of unknown function that is homologous to Nup100p"

	Filename	XCorr	DeltCN	Conf%	ObsM+H+	CalcM+H+	PPM	SpR	ZScore	Ion%	#	Sequence
*	Mito_1_28.09683.09683.2	1.566	0.0348	94.1%	1450.9131	1449.844	45.3	1	3.489	45.8%	1	K.LKLLSGTPAIT*KK.H	2

YHR082C

1029

117082

6.6

KSP1 SGDID:S000001124, Chr VIII from 271550-268461, reverse complement, Verified ORF, "Nonessential putative serine/threonine protein kinase of unknown cellular role; overproduction causes allele-specific suppression of the prp20-10 mutation"

	Filename	XCorr	DeltCN	Conf%	ObsM+H+	CalcM+H+	PPM	SpR	ZScore	Ion%	#	Sequence
*	Mito_1_37.12878.12878.2	1.2062	0.8361	100.0%	1376.2124	1376.269	-41.2	1	2.017	38.9%	1	D.ENDCDSSDCD.D	2

YOR219C

931

107200

6.0

STE13 SGDID:S000005745, Chr XV from 755009-752214, reverse complement, Verified ORF, "Dipeptidyl aminopeptidase, Golgi integral membrane protein that cleaves on the carboxyl side of repeating -X-Ala- sequences, required for maturation of alpha factor, transcription is induced by a-factor"

	Filename	XCorr	DeltCN	Conf%	ObsM+H+	CalcM+H+	PPM	SpR	ZScore	Ion%	#	Sequence
*	Mito_1_13.04610.04610.2	1.4596	0.0859	100.0%	969.5919	968.5775	11.4	70	3.331	62.5%	1	K.KLGPDTPIK.V	2

YMR054W

890

101661

5.4

STV1 SGDID:S000004658, Chr XIII from 383302-385974, Verified ORF, "Subunit of vacuolar-ATPase V0 domain, one of two isoforms (Stv1p and Vph1p); Stv1p is located in V-ATPase complexes of the Golgi and endosomes while Vph1p is located in V-ATPase complexes of the vacuole"

	Filename	XCorr	DeltCN	Conf%	ObsM+H+	CalcM+H+	PPM	SpR	ZScore	Ion%	#	Sequence
*	Mito_1_14.05071.05071.2	1.374	0.0566	98.5%	1098.5651	1096.5931	-31.7	45	2.845	56.2%	1	R.YMITGSIRR.T	2

Reverse_YBL088C

2787

321567

6.9

TEL1 SGDID:S000000184, Chr II from 59379-51016, reverse complement, Verified ORF, "Protein kinase, primarily involved in telomere length regulation; contributes to cell cycle checkpoint control in response to DNA damage; functionally redundant with Mec1p; homolog of human ataxia telangiectasia (ATM) gene"

	Filename	XCorr	DeltCN	Conf%	ObsM+H+	CalcM+H+	PPM	SpR	ZScore	Ion%	#	Sequence
*	Mito_1_27.09608.09608.3	3.7219	0.0427	97.3%	2849.3552	2846.439	-32.9	202	3.582	26.1%	1	K.EHAFQTQVLTAGLALPIHLPYQY*R.M	3

YDR127W

1588

174754

6.3

ARO1 SGDID:S000002534, Chr IV from 704479-709245, Verified ORF, "Pentafunctional arom protein, catalyzes steps 2 through 6 in the biosynthesis of chorismate, which is a precursor to aromatic amino acids"

	Filename	XCorr	DeltCN	Conf%	ObsM+H+	CalcM+H+	PPM	SpR	ZScore	Ion%	#	Sequence
*	Mito_1_36.12400.12400.3	1.7591	0.0805	94.1%	1657.9219	1653.8394	41.7	188	3.695	35.7%	1	K.PLIAVNMTSKGSIS*R.V	3

Reverse_YPL016W

1314

147938

8.8

	Filename	XCorr	DeltCN	Conf%	ObsM+H+	CalcM+H+	PPM	SpR	ZScore	Ion%	#	Sequence
*	Mito_1_13.04636.04636.3	3.7096	0.068	99.4%	1548.8292	1544.8795	-41.1	444	3.164	40.9%	1	K.PLKKLEIEYQQR.L	3

Reverse_YMR109W