D parc

828

95441

6.8

VTC2 SGDID:S000001890, Chr VI from 131805-134291, Verified ORF, "Vacuolar membrane protein involved in vacuolar polyphosphate accumulation; functions as a regulator of vacuolar H+-ATPase activity and vacuolar transporter chaperones; involved in protein localization and non-autophagic vacuolar fusion"

	Filename	XCorr	DeltCN	Conf%	ObsM+H+	CalcM+H+	SpR	ZScore	Ion%	#	Sequence
*	PARC_hx12_04_itms.09510.09510.2	2.0429	0.0395	98.7%	1217.3121	1217.4099	1	3.11	77.8%	1	K.LANEVYPPWK.G	2
*	PARC_hx12_05_itms.10485.10485.2	3.566	0.1167	99.9%	1380.4122	1379.5499	1	4.688	80.0%	2	K.FVEELDKELEK.V	2
*	PARC_hx12_05_itms.15509.15509.2	3.8104	0.1303	100.0%	1725.5322	1725.936	1	4.437	76.9%	2	R.LEEDFSEIQNFIIK.N	2
*	PARC_hx12_03_itms.08663.08663.2	2.4862	0.1473	99.9%	1004.21216	1003.146	219	3.826	71.4%	1	K.NELQPVFR.T	2
	PARC_hx12_04_itms.10516.10516.2	2.3391	0.1661	99.9%	1114.1921	1114.3447	1	5.285	87.5%	1	K.FPYSVMEIK.V	2 2
*	PARC_hx12_04_itms.09410.09410.2	4.0741	0.3309	100.0%	1731.3922	1731.9307	1	6.706	65.6%	2	K.SSLDSSMSASSMISNVK.L	2
*	PARC_hx12_04_itms.07492.07492.3	4.4593	0.3733	100.0%	2505.9243	2504.719	1	6.68	36.9%	1	R.LSNLKEPQHQAAVPVSQEENER.I	3
*	PARC_hx12_04_itms.07509.07509.2	2.3836	0.0205	98.9%	1030.0922	1028.1997	5	4.101	85.7%	1	K.RVDIIQQR.S	2
*	PARC_hx12_03_itms.09858.09858.2	3.015	0.2567	100.0%	1595.6522	1596.7806	1	5.649	66.7%	2	R.QELQIQNLEVPER.I	2

Similarities: YPL019C(1:8)

YJL012C

721

83155

6.8

VTC4 SGDID:S000003549, Chr X from 413314-411149, reverse complement, Verified ORF, "Vacuolar membrane protein involved in vacuolar polyphosphate accumulation; functions as a regulator of vacuolar H+-ATPase activity and vacuolar transporter chaperones; involved in non-autophagic vacuolar fusion"

	Filename	XCorr	DeltCN	Conf%	ObsM+H+	CalcM+H+	SpR	ZScore	Ion%	#	Sequence
*	PARC_hx12_04_itms.07196.07196.2	2.7226	0.2334	100.0%	818.5122	817.92	1	4.668	100.0%	1	K.FGEHLSK.S	2
*	PARC_hx12_05_itms.12466.12466.2	2.7044	0.2273	100.0%	1722.5922	1721.8604	1	4.701	58.3%	3	R.QYSYYYISYDDLK.T	2
*	PARC_hx12_04_itms.07247.07247.2	3.8209	0.4581	100.0%	1580.6522	1580.7843	1	8.384	83.3%	1	R.VKEVQEQVQHTVR.L	2
*	PARC_hx12_03_itms.09005.09005.1	2.0739	0.0856	99.0%	1078.42	1079.2413	179	3.765	62.5%	1	K.ISQLYDIAR.T	1
*	PARC_hx12_03_itms.08986.08986.2	3.4593	0.195	100.0%	1079.2722	1079.2413	1	4.939	93.8%	2	K.ISQLYDIAR.T	2
*	PARC_hx12_03_itms.09076.09076.2	2.5337	0.2401	100.0%	1070.7322	1071.2181	1	5.255	87.5%	1	K.YTVDQVFAK.M	2
*	PARC_hx12_04_itms.08814.08814.2	2.7051	0.1027	99.8%	1075.9521	1076.1973	1	5.21	83.3%	2	R.TAFQLPGDAR.V	2
*	PARC_hx12_05_itms.12204.12204.2	2.951	0.2001	100.0%	1066.2522	1066.2854	1	4.754	87.5%	1	R.FPYAVLEVK.L	2
*	PARC_hx12_05_itms.12210.12210.1	1.7827	0.0147	99.3%	1066.69	1066.2854	48	2.76	56.2%	1	R.FPYAVLEVK.L	1
*	PARC_hx12_05_itms.10924.10924.2	4.0378	0.4	100.0%	1683.0922	1681.8888	1	7.758	84.6%	6	K.LQTQLGQEPPEWVR.E	2
*	PARC_hx12_05_itms.09784.09784.2	3.2304	0.2849	100.0%	1404.3922	1404.6494	1	6.16	75.0%	1	R.ELVGSHLVEPVPK.F	2

YHR149C

734

81849

5.0

SKG6 SGDID:S000001192, Chr VIII from 396662-394458, reverse complement, Uncharacterized ORF, "Protein of unknown function; found in the bud tip and bud neck, potential Cdc28p substrate; Skg6p interacts with Zds1p and Zds2p"

	Filename	XCorr	DeltCN	Conf%	ObsM+H+	CalcM+H+	SpR	ZScore	Ion%	#	Sequence
*	PARC_hx12_03_itms.11136.11136.2	3.5491	0.3548	100.0%	2415.4321	2416.4854	1	6.588	50.0%	1	K.EAEEDNDPDFEGDSEFLPTMK.D	2
*	PARC_hx12_04_itms.08699.08699.2	4.0453	0.4123	100.0%	1728.6721	1728.8125	1	7.327	65.4%	3	R.FGKDDDNYELQDIR.E	2
*	PARC_hx12_03_itms.09854.09854.2	3.1163	0.2375	100.0%	1157.3922	1157.3115	1	5.68	87.5%	2	K.SIYQVYLDR.A	2
*	PARC_hx12_05_itms.11026.11026.2	3.672	0.2474	100.0%	1436.8121	1437.6793	1	5.788	66.7%	3	R.VDNIVQNPLPSIK.I	2
*	PARC_hx12_04_itms.10552.10552.2	3.0025	0.3235	100.0%	2418.392	2419.6685	1	6.171	31.0%	1	K.EALPLNNTNLAEYGPEMAQSQK.Q	2
*	PARC_hx12_03_itms.08652.08652.2	4.3049	0.3756	100.0%	2221.152	2220.3574	1	7.231	55.3%	1	K.QYPVQDTLTVNDTEAAPSNR.I	2

YML001W

208

23043

4.9

YPT7 SGDID:S000004460, Chr XIII from 267174-267800, Verified ORF, "GTPase; GTP-binding protein of the rab family; required for homotypic fusion event in vacuole inheritance, for endosome-endosome fusion, similar to mammalian Rab7"

	Filename	XCorr	DeltCN	Conf%	ObsM+H+	CalcM+H+	SpR	ZScore	Ion%	#	Sequence
*	PARC_hx12_03_itms.09264.09264.2	2.4658	0.0434	98.9%	1595.1522	1592.7667	153	3.312	50.0%	1	K.VATMQVWDTAGQER.F	2
*	PARC_hx12_04_itms.11663.11663.2	3.0997	0.1111	99.8%	1563.5721	1563.7074	1	5.016	73.1%	2	K.NAINVDTAFEEIAR.S	2

YLR197W

13.3%

504

56864

8.9

SIK1 SGDID:S000004187, Chr XII from 546099-547613, Verified ORF, "Essential evolutionarily-conserved nucleolar protein component of the box C/D snoRNP complexes that direct 2'-O-methylation of pre-rRNA during its maturation; overexpression causes spindle orientation defects"

	Filename	XCorr	DeltCN	Conf%	ObsM+H+	CalcM+H+	SpR	ZScore	Ion%	#	Sequence
*	PARC_hx12_04_itms.09862.09862.2	2.8482	0.1178	99.8%	1627.4321	1626.7631	17	4.809	46.2%	2	K.EVQEQINDFGAFTK.L	2
*	PARC_hx12_05_itms.14174.14174.2	3.8213	0.3986	100.0%	2217.7522	2218.3794	1	7.778	45.2%	1	K.GAAEALENANDISEGLVSESLK.A	2
*	PARC_hx12_05_itms.13056.13056.2	2.9904	0.2202	100.0%	1899.5122	1899.0642	30	5.02	37.5%	3	R.IDNYSEEPSNVFGSVLK.K	2
*	PARC_hx12_05_itms.13528.13528.2	4.8295	0.4431	100.0%	1666.2522	1666.8866	1	7.972	84.6%	3	K.NELAIQEAMELYNK.D	2

YDR212W

13.2%

559

60481

6.5

TCP1 SGDID:S000002620, Chr IV from 887227-888906, Verified ORF, "Alpha subunit of chaperonin-containing T-complex, which mediates protein folding in the cytosol; involved in maintenance of actin cytoskeleton; homolog to Drosophila melanogaster and mouse tailless complex polypeptide"

	Filename	XCorr	DeltCN	Conf%	ObsM+H+	CalcM+H+	SpR	ZScore	Ion%	#	Sequence
*	PARC_hx12_03_itms.09154.09154.2	3.0573	0.1259	99.9%	1066.9122	1067.184	1	4.977	83.3%	1	R.SDTLFLGGEK.I	2
*	PARC_hx12_04_itms.08772.08772.2	4.3652	0.3626	100.0%	1314.4722	1313.4966	1	6.784	85.0%	3	K.ILVELAQQQDR.E	2
*	PARC_hx12_05_itms.10769.10769.2	3.3699	0.1606	100.0%	1189.4122	1188.3759	2	4.989	88.9%	2	K.IACLDLNLQK.A	2
*	PARC_hx12_05_itms.08738.08738.2	1.6512	0.1073	99.1%	1000.0722	1000.1429	162	3.946	68.8%	1	K.HSSSSIILR.G	2
*	PARC_hx12_04_itms.07253.07253.2	4.5481	0.3707	100.0%	1663.1322	1662.8578	1	7.307	75.0%	1	R.SYHAASQMAKPEDVK.R	2
*	PARC_hx12_04_itms.08729.08729.2	2.2581	0.0523	98.9%	2186.4922	2187.3857	144	3.07	27.8%	1	R.IDTMITVDPEPPKEDPHDH.-	2

YOR270C

13.0%

840

95529

5.5

VPH1 SGDID:S000005796, Chr XV from 830571-828049, reverse complement, Verified ORF, "Subunit of vacuolar-ATPase V0 domain, one of two isoforms (Vph1p and Stv1p); Vph1p is located in V-ATPase complexes of the vacuole while Stv1p is located in V-ATPase complexes of the Golgi and endosomes"

	Filename	XCorr	DeltCN	Conf%	ObsM+H+	CalcM+H+	SpR	ZScore	Ion%	#	Sequence
*	PARC_hx12_05_itms.14560.14560.2	3.4557	0.3462	100.0%	1668.6122	1668.89	1	6.354	53.6%	1	R.DSAYTLGQLGLVQFR.D	2
*	PARC_hx12_05_itms.13970.13970.2	2.9654	0.2133	100.0%	2401.5923	2402.6196	4	5.133	33.3%	5	K.YLDGSGELYVPPSGSVIDDYVR.N	2
*	PARC_hx12_04_itms.09123.09123.2	5.2082	0.3627	100.0%	1761.4722	1761.985	1	6.933	78.6%	2	R.LIQMEDATDQIEVQK.N	2
*	PARC_hx12_03_itms.08745.08745.2	4.0406	0.3256	100.0%	1420.1522	1420.6024	1	6.788	72.7%	1	K.TVEIEQPVYDVK.T	2
*	PARC_hx12_03_itms.09657.09657.2	5.7315	0.594	100.0%	2068.3323	2069.146	1	10.981	61.1%	2	K.IAESLDANLYDVDSSNEGR.S	2
*	PARC_hx12_05_itms.13958.13958.2	4.2413	0.4127	100.0%	1629.3522	1628.8169	1	7.713	67.9%	4	K.TTSTTLESELYAIAK.E	2
*	PARC_hx12_03_itms.12374.12374.2	3.8988	0.4042	100.0%	1396.2922	1396.4991	1	6.955	85.0%	3	K.ELDSWFQDVTR.E	2

YDR468C

12.9%

224

25817

4.6

TLG1 SGDID:S000002876, Chr IV from 1398690-1398016, reverse complement, Verified ORF, "Essential t-SNARE that forms a complex with Tlg2p and Vti1p and mediates fusion of endosome-derived vesicles with the late Golgi; binds the docking complex VFT (Vps fifty-three) through interaction with Vps51p"

	Filename	XCorr	DeltCN	Conf%	ObsM+H+	CalcM+H+	SpR	ZScore	Ion%	#	Sequence
*	PARC_hx12_03_itms.10293.10293.2	5.6724	0.5116	100.0%	2070.4922	2071.1187	1	9.359	67.6%	3	R.HNTAGDDDQEEEIQDILK.D	2
*	PARC_hx12_03_itms.07462.07462.2	2.3595	0.2251	100.0%	1292.9521	1291.4062	1	5.905	65.0%	1	R.EQDVHLDGIHK.T	2

U	YBR189W	3	4	12.8%	195	22299	10.1	RPS9B SGDID:S000000393, Chr II from 604503-604509,604923-605503, Verified ORF, "Protein component of the small (40S) ribosomal subunit; nearly identical to Rps9Bp and has similarity to E. coli S4 and rat S9 ribosomal proteins"
U	YPL081W	3	4	12.7%	197	22443	10.0	RPS9A SGDID:S000006002, Chr XVI from 404947-404953,405455-406041, Verified ORF, "Protein component of the small (40S) ribosomal subunit; nearly identical to Rps9Ap and has similarity to E. coli S4 and rat S9 ribosomal proteins"

Filename	XCorr	DeltCN	Conf%	ObsM+H+	CalcM+H+	SpR	ZScore	Ion%	#	Sequence
PARC_hx12_03_itms.08718.08718.1	2.1576	0.2172	100.0%	834.47	834.99084	1	4.433	64.3%	1	K.LAGEFGLK.N	1
PARC_hx12_04_itms.09575.09575.2	2.9519	0.0452	99.5%	1033.2122	1033.2156	2	4.307	81.2%	2	R.LFEGNALIR.R	2
PARC_hx12_05_itms.08246.08246.2	2.1773	0.0060	98.4%	1036.0922	1036.2192	12	3.057	78.6%	1	R.RLQTQVYK.L	2

YDR135C

12.7%

1515

171120

8.4

YCF1 SGDID:S000002542, Chr IV from 727546-722999, reverse complement, Verified ORF, "Vacuolar glutathione S-conjugate transporter of the ATP-binding cassette family, has a role in detoxifying metals such as cadmium, mercury, and arsenite; also transports unconjugated bilirubin; similar to human cystic fibrosis protein CFTR"

	Filename	XCorr	DeltCN	Conf%	ObsM+H+	CalcM+H+	SpR	ZScore	Ion%	#	Sequence
*	PARC_hx12_05_itms.10230.10230.2	2.8085	0.2832	100.0%	1105.8322	1106.2329	2	5.533	66.7%	1	M.AGNLVSWACK.L	2
*	PARC_hx12_03_itms.09402.09402.2	2.703	0.1037	99.8%	1115.2922	1114.2836	9	4.863	87.5%	1	K.YLVEADLYK.L	2
*	PARC_hx12_05_itms.14763.14763.2	2.8107	0.2436	100.0%	2071.872	2072.2817	2	4.552	46.9%	2	R.LFTFFTNEELQPDSVQR.L	2
*	PARC_hx12_03_itms.07586.07586.1	1.9405	0.1026	98.9%	834.52	834.9505	205	3.702	66.7%	1	K.NINFQAK.K	1
*	PARC_hx12_05_itms.09752.09752.2	2.6578	0.2269	100.0%	986.09216	986.11847	1	4.786	85.7%	1	K.ENILFGHR.Y	2
	PARC_hx12_03_itms.07349.07349.1	1.9621	0.0809	99.0%	846.52	846.95905	12	3.287	62.5%	1	K.GISLSGGQK.A	1 1
	PARC_hx12_03_itms.07354.07354.2	1.747	0.029	98.0%	847.1122	846.95905	34	2.99	68.8%	1	K.GISLSGGQK.A	2 2
*	PARC_hx12_05_itms.14219.14219.2	3.2706	0.4102	100.0%	2085.3323	2085.278	1	7.082	52.8%	1	R.ADTYLLDDPLAAVDEHVAR.H	2
*	PARC_hx12_04_itms.10424.10424.2	3.739	0.3546	100.0%	1687.2922	1686.8566	1	6.145	78.6%	3	R.ESSIPVEGELEQLQK.L	2
*	PARC_hx12_05_itms.13220.13220.2	3.8346	0.4279	100.0%	1468.4922	1468.7106	1	7.984	75.0%	1	R.APMTFFETTPIGR.I	2
*	PARC_hx12_05_itms.11555.11555.2	3.0876	0.2679	100.0%	1828.4722	1828.0093	1	5.373	53.3%	1	R.IDNNMSAFYPSINANR.W	2
*	PARC_hx12_05_itms.08933.08933.2	3.1115	0.3291	100.0%	1529.9722	1530.7672	1	5.263	61.5%	1	K.SEAPLIVEGHRPPK.E	2
*	PARC_hx12_03_itms.12074.12074.2	4.9774	0.4708	100.0%	1977.3322	1978.1252	1	8.079	73.3%	4	R.ENIDPINQYTDEAIWR.A	2
*	PARC_hx12_04_itms.08104.08104.2	2.0679	0.0306	98.7%	910.9322	911.0892	1	3.878	92.9%	1	R.ALELSHLK.E	2
*	PARC_hx12_05_itms.13692.13692.2	4.9897	0.5089	100.0%	1803.4521	1803.0166	1	9.234	71.9%	4	K.ILVLDEATAAVDVETDK.V	2
*	PARC_hx12_04_itms.09982.09982.2	5.1032	0.2919	100.0%	1623.1921	1620.7563	1	6.638	75.0%	6	K.VAEFDSPGQLLSDNK.S	2

Similarities: YLL015W(2:14)

U	YGR085C	2	3	12.6%	174	19750	9.9	RPL11B SGDID:S000003317, Chr VII from 648911-648387, reverse complement, Verified ORF, "Protein component of the large (60S) ribosomal subunit, nearly identical to Rpl11Ap; involved in ribosomal assembly; depletion causes degradation of proteins and RNA of the 60S subunit; has similarity to E. coli L5 and rat L11"
U	YPR102C	2	3	12.6%	174	19720	9.9	RPL11A SGDID:S000006306, Chr XVI from 731746-731222, reverse complement, Verified ORF, "Protein component of the large (60S) ribosomal subunit, nearly identical to Rpl11Bp; involved in ribosomal assembly; depletion causes degradation of proteins and RNA of the 60S subunit; has similarity to E. coli L5 and rat L11"

	Filename	XCorr	DeltCN	Conf%	ObsM+H+	CalcM+H+	SpR	ZScore	Ion%	#	Sequence
	PARC_hx12_04_itms.08015.08015.2	4.675	0.3876	100.0%	1513.7122	1514.719	1	7.271	73.1%	2	K.VLEQLSGQTPVQSK.A	2
	PARC_hx12_03_itms.10088.10088.2	2.1492	0.21	100.0%	1013.1722	1012.107	61	3.599	64.3%	1	K.EDTVSWFK.Q	2

YPR159W

720

80123

4.7

KRE6 SGDID:S000006363, Chr XVI from 857579-859741, Verified ORF, "Protein required for beta-1,6 glucan biosynthesis; putative beta-glucan synthase; appears functionally redundant with Skn1p"

	Filename	XCorr	DeltCN	Conf%	ObsM+H+	CalcM+H+	SpR	ZScore	Ion%	#	Sequence
*	PARC_hx12_05_itms.12322.12322.2	3.4679	0.3688	100.0%	2478.2122	2478.5896	1	7.218	40.0%	1	R.TFYDGDDPYWTAPDVHYDATK.D	2
*	PARC_hx12_04_itms.08568.08568.2	2.8454	0.0997	99.8%	1050.8722	1051.2053	65	3.677	75.0%	1	R.SGMLQSWNK.V	2
*	PARC_hx12_03_itms.07671.07671.2	4.307	0.4184	100.0%	2015.6322	2016.0637	1	8.7	58.8%	1	K.LSICTCDGEDHPNQGVGR.G	2
*	PARC_hx12_03_itms.09519.09519.2	3.3182	0.3063	100.0%	1574.1322	1574.6819	1	6.132	67.9%	2	R.GAPEIDVLEGETDTK.I	2
	PARC_hx12_03_itms.10508.10508.2	4.9487	0.4306	100.0%	1834.5922	1834.9365	1	8.014	82.1%	2	K.YAIEYLNDDDNGYIR.W	2
*	PARC_hx12_05_itms.12426.12426.2	2.8818	0.2145	98.7%	1437.3922	1437.5945	1	5.215	77.3%	1	R.WFVGDTPTYTIH.A	2

YLR034C

473

51775

8.1

SMF3 SGDID:S000004024, Chr XII from 211934-210513, reverse complement, Verified ORF, "Putative divalent metal ion transporter involved in iron homeostasis; transcriptionally regulated by metal ions; member of the Nramp family of metal transport proteins"

	Filename	XCorr	DeltCN	Conf%	ObsM+H+	CalcM+H+	SpR	ZScore	Ion%	#	Sequence
*	PARC_hx12_04_itms.09059.09059.2	2.0713	0.0795	99.3%	1012.53217	1011.22437	35	3.372	71.4%	1	R.SYMQILQK.F	2
*	PARC_hx12_03_itms.09256.09256.2	2.7851	0.0142	98.8%	1583.4122	1583.7045	14	4.457	46.2%	1	K.LGTITGYDLAENCR.H	2
*	PARC_hx12_03_itms.07379.07379.2	2.0261	0.044	98.9%	904.15216	904.01044	180	3.316	75.0%	1	R.LHDYDLK.K	2
*	PARC_hx12_03_itms.07972.07972.2	3.5684	0.307	100.0%	1368.5721	1368.5939	1	7.129	81.8%	1	K.LMVVHDENGVVR.A	2
*	PARC_hx12_03_itms.08981.08981.2	5.8633	0.5505	100.0%	1828.3722	1827.986	1	9.784	73.5%	3	R.APADVNAIADETTPLNSK.H	2

contaminant_KERATIN07

473

50915

5.5

no description

	Filename	XCorr	DeltCN	Conf%	ObsM+H+	CalcM+H+	SpR	ZScore	Ion%	#	Sequence
	PARC_hx12_03_itms.07559.07559.2	3.9442	0.3703	100.0%	1301.7522	1302.4241	1	7.353	81.8%	3	R.ALEEANADLEVK.I	2 2 2 2
*	PARC_hx12_05_itms.12965.12965.2	4.1528	0.3943	100.0%	2065.892	2065.3774	1	7.391	55.6%	1	K.IIAATIENAQPILQIDNAR.L	2
*	PARC_hx12_03_itms.07744.07744.2	2.332	0.2735	100.0%	1031.3722	1031.1564	2	5.48	92.9%	1	N.YEHELALR.Q	2
	PARC_hx12_03_itms.09638.09638.1	2.5197	0.2563	100.0%	1030.55	1030.2096	57	5.429	62.5%	2	R.VLDELTLAR.T	1 1 1 1 1
	PARC_hx12_03_itms.09585.09585.2	3.9245	0.312	100.0%	1030.6522	1030.2096	1	6.264	93.8%	2	R.VLDELTLAR.T	2 2 2 2 2
	PARC_hx12_05_itms.09944.09944.2	3.9447	0.1781	100.0%	1380.2122	1380.5437	1	6.536	80.0%	14	K.TRLEQEIATYR.R	2 2 2 2 2

YLR340W

312

33717

4.8

RPP0 SGDID:S000004332, Chr XII from 805887-806825, Verified ORF, "Conserved ribosomal protein P0 similar to rat P0, human P0, and E. coli L10e; shown to be phosphorylated on serine 302"

	Filename	XCorr	DeltCN	Conf%	ObsM+H+	CalcM+H+	SpR	ZScore	Ion%	#	Sequence
*	PARC_hx12_04_itms.12416.12416.2	2.9994	0.2019	100.0%	1268.0922	1268.4088	7	4.672	70.0%	3	R.GFLSDLPDFEK.L	2
*	PARC_hx12_05_itms.13974.13974.2	4.0755	0.4284	100.0%	1764.6921	1766.0038	1	8.578	56.7%	1	K.GNVGFVFTNEPLTEIK.N	2
*	PARC_hx12_03_itms.10274.10274.2	3.3993	0.3815	100.0%	1284.2522	1284.4575	1	6.792	77.3%	2	R.AGAVAPEDIWVR.A	2

YLR259C

12.4%

572

60752

5.3

HSP60 SGDID:S000004249, Chr XII from 665004-663286, reverse complement, Verified ORF, "Tetradecameric mitochondrial chaperonin required for ATP-dependent folding of precursor polypeptides and complex assembly; prevents aggregation and mediates protein refolding after heat shock; role in mtDNA transmission; similarity to groEL"

	Filename	XCorr	DeltCN	Conf%	ObsM+H+	CalcM+H+	SpR	ZScore	Ion%	#	Sequence
*	PARC_hx12_05_itms.11490.11490.2	3.6421	0.2585	100.0%	1339.7922	1339.5773	1	5.288	72.7%	1	R.NVLIEQPFGPPK.I	2
*	PARC_hx12_03_itms.10606.10606.2	4.6729	0.4099	100.0%	1522.1522	1522.6674	1	8.482	79.2%	1	R.TLEDELEVTEGMR.F	2
*	PARC_hx12_05_itms.11250.11250.2	2.7259	0.141	99.8%	1581.9321	1582.8375	2	4.45	53.1%	2	R.AAVEEGILPGGGTALVK.A	2
*	PARC_hx12_03_itms.10064.10064.2	3.9565	0.4006	100.0%	1520.1522	1520.6793	1	7.121	66.7%	2	R.VLDEVVVDNFDQK.L	2
*	PARC_hx12_04_itms.09015.09015.2	3.0025	0.2836	100.0%	1657.8922	1657.8613	1	5.759	53.3%	2	K.QIIENAGEEGSVIIGK.L	2

YMR200W

12.1%

256

28908

5.6

ROT1 SGDID:S000004813, Chr XIII from 664751-665521, Verified ORF, "Protein that may be involved in cell wall function; mutations in rot1 cause cell wall defects, suppress tor2 mutations, and are synthetically lethal with rot2 mutations"

	Filename	XCorr	DeltCN	Conf%	ObsM+H+	CalcM+H+	SpR	ZScore	Ion%	#	Sequence
*	PARC_hx12_03_itms.08922.08922.2	3.5259	0.2661	100.0%	1606.3322	1603.6392	1	4.787	53.8%	2	C.EDESNSIYGTWSSK.S	2
*	PARC_hx12_03_itms.09014.09014.2	3.4325	0.3983	100.0%	1961.3121	1962.0027	1	7.904	65.6%	1	R.QLFSDPCNDDGVSTYSR.Y	2

YLR447C

11.9%

345

39791

4.6

VMA6 SGDID:S000004439, Chr XII from 1027889-1026852, reverse complement, Verified ORF, "Subunit D of the five-subunit V0 integral membrane domain of vacuolar H+-ATPase (V-ATPase), an electrogenic proton pump found in the endomembrane system; stabilizes VO subunits; required for V1 domain assembly on the vacuolar membrane"

	Filename	XCorr	DeltCN	Conf%	ObsM+H+	CalcM+H+	SpR	ZScore	Ion%	#	Sequence
*	PARC_hx12_04_itms.12617.12617.2	5.0247	0.3502	100.0%	2198.9722	2199.36	1	8.268	55.9%	3	K.NCFDTAEELDDMNIEIIR.N	2
*	PARC_hx12_03_itms.11465.11465.2	3.548	0.3392	100.0%	1572.0922	1570.7236	1	5.911	75.0%	4	K.ECMQTLLGFEADR.R	2
*	PARC_hx12_03_itms.08690.08690.2	3.2264	0.3601	100.0%	1170.2922	1170.3103	1	6.567	77.8%	1	R.AALANVYEYR.G	2

YDR432W

11.8%

414

45407

5.5

NPL3 SGDID:S000002840, Chr IV from 1328773-1330017, Verified ORF, "RNA-binding protein that carries poly(A)+ mRNA from the nucleus into the cytoplasm; phosphorylation by Sky1p in the cytoplasm may promote release of mRNAs"

	Filename	XCorr	DeltCN	Conf%	ObsM+H+	CalcM+H+	SpR	ZScore	Ion%	#	Sequence
*	PARC_hx12_05_itms.11283.11283.2	4.1017	0.4311	100.0%	1481.8522	1482.6763	1	6.992	83.3%	3	K.SFANQPLEVVYSK.L	2
*	PARC_hx12_04_itms.09131.09131.2	4.0264	0.4594	100.0%	1585.0521	1585.6677	1	8.08	69.2%	1	R.ENSLETTFSSVNTR.D	2
*	PARC_hx12_05_itms.18776.18776.2	4.5861	0.4384	100.0%	2437.5122	2438.6501	1	7.761	52.4%	2	R.DFDGTGALEFPSEEILVEALER.L	2

YLR025W

11.7%

240

26987

4.7

SNF7 SGDID:S000004015, Chr XII from 194453-195175, Verified ORF, "One of four subunits of the endosomal sorting complex required for transport III (ESCRT-III); involved in the sorting of transmembrane proteins into the multivesicular body (MVB) pathway; recruited from the cytoplasm to endosomal membranes"

	Filename	XCorr	DeltCN	Conf%	ObsM+H+	CalcM+H+	SpR	ZScore	Ion%	#	Sequence
*	PARC_hx12_04_itms.09347.09347.2	2.5115	0.2411	98.6%	1477.8322	1478.6605	1	4.724	58.3%	1	F.SIESANLNLETMR.A	2
*	PARC_hx12_03_itms.10750.10750.2	4.3766	0.4212	100.0%	1661.3121	1661.7631	1	8.663	75.0%	2	R.EQVELGDEISDAISR.P	2

YML075C

11.6%

1054

115625

8.0

HMG1 SGDID:S000004540, Chr XIII from 118898-115734, reverse complement, Verified ORF, "One of two isozymes of HMG-CoA reductase that catalyzes the conversion of HMG-CoA to mevalonate, which is a rate-limiting step in sterol biosynthesis; localizes to the nuclear envelope; overproduction induces the formation of karmellae"

	Filename	XCorr	DeltCN	Conf%	ObsM+H+	CalcM+H+	SpR	ZScore	Ion%	#	Sequence
*	PARC_hx12_03_itms.09435.09435.2	3.1277	0.2295	100.0%	1295.3322	1295.4753	3	4.677	80.0%	2	K.YILQEDLSVSK.E	2
*	PARC_hx12_03_itms.11030.11030.2	4.3435	0.5046	100.0%	1868.4922	1868.9922	1	9.017	68.8%	1	R.ITTDEIVFESVSEEGGR.L	2
*	PARC_hx12_05_itms.09051.09051.2	2.4842	0.2096	100.0%	1377.2722	1376.5522	1	5.319	63.6%	1	R.IHTSYTADQLVK.T	2
*	PARC_hx12_03_itms.09734.09734.1	2.0563	0.0030	99.2%	946.61	947.16254	14	2.95	71.4%	1	K.LPLYALEK.K	1
*	PARC_hx12_03_itms.09724.09724.2	1.8941	0.122	99.6%	947.2522	947.16254	2	4.386	78.6%	1	K.LPLYALEK.K	2
*	PARC_hx12_05_itms.13749.13749.2	4.6839	0.4363	100.0%	1528.4122	1526.7734	1	8.086	67.9%	4	K.ALSILAEAPVLASDR.L	2
	PARC_hx12_03_itms.07775.07775.2	4.2933	0.3939	100.0%	1273.7522	1274.46	1	8.126	88.5%	1	K.AINAGGGATTVLTK.D	2 2
*	PARC_hx12_03_itms.09548.09548.2	2.7829	0.0203	98.9%	1502.6921	1503.6519	1	4.91	70.8%	1	K.IWLDSEEGQNAIK.K	2
*	PARC_hx12_03_itms.09122.09122.2	3.5513	0.3587	100.0%	1413.4722	1413.6139	1	7.39	65.4%	2	K.SVVAEATIPGDVVR.K	2
*	PARC_hx12_04_itms.07434.07434.2	4.1177	0.4955	100.0%	1994.5721	1995.1997	1	8.358	58.8%	2	R.KPAEPTKPNNLDATDINR.L	2

Similarities: YLR450W(1:9)

YJL198W

11.6%

881

97689

7.1

PHO90 SGDID:S000003734, Chr X from 60843-63488, Verified ORF, "Low-affinity phosphate transporter; deletion of pho84, pho87, pho89, pho90, and pho91 causes synthetic lethality; transcription independent of Pi and Pho4p activity; overexpression results in vigorous growth"

	Filename	XCorr	DeltCN	Conf%	ObsM+H+	CalcM+H+	SpR	ZScore	Ion%	#	Sequence
*	PARC_hx12_05_itms.14158.14158.2	4.0256	0.3939	100.0%	2613.612	2612.8096	1	7.113	34.8%	1	K.NLIYTLQTDELQVGDNEEGFGAGK.S	2
*	PARC_hx12_03_itms.10848.10848.2	3.7499	0.4494	100.0%	1345.3322	1345.4924	1	7.459	72.7%	1	K.DAGIVEETIELR.E	2
*	PARC_hx12_03_itms.10936.10936.2	4.1449	0.2931	100.0%	1371.1921	1371.5298	2	5.579	85.0%	2	R.TELIESEQFFK.D	2
*	PARC_hx12_05_itms.14726.14726.2	4.977	0.3594	100.0%	1844.5521	1844.0282	1	6.971	73.3%	1	K.DTYAFQAETIELLNSK.I	2
*	PARC_hx12_05_itms.15736.15736.2	3.9909	0.3467	100.0%	1632.3322	1631.8817	1	7.019	71.4%	2	K.DMLGLLSQADELTPK.E	2
*	PARC_hx12_05_itms.10262.10262.2	2.4042	0.157	99.9%	1204.4521	1204.4117	2	4.706	75.0%	1	K.FTSINNVALPK.L	2
*	PARC_hx12_05_itms.10973.10973.2	3.63	0.3746	100.0%	1234.4321	1234.4355	1	6.27	70.8%	2	K.AVSSSGLLSTIAK.A	2

YJL183W

11.4%

422

47801

8.5

MNN11 SGDID:S000003719, Chr X from 84066-85334, Verified ORF, "Subunit of a Golgi mannosyltransferase complex that also contains Anp1p, Mnn9p, Mnn10p, and Hoc1p, and mediates elongation of the polysaccharide mannan backbone; has homology to Mnn10p"

	Filename	XCorr	DeltCN	Conf%	ObsM+H+	CalcM+H+	SpR	ZScore	Ion%	#	Sequence
*	PARC_hx12_05_itms.10215.10215.2	1.673	0.0024	97.5%	1081.4122	1081.1759	112	2.734	56.2%	1	R.SVGSQWFNR.L	2
*	PARC_hx12_04_itms.08891.08891.2	2.8378	0.3097	100.0%	1742.3322	1742.9641	1	5.235	67.9%	1	R.LILKPEENALTDEEK.K	2
*	PARC_hx12_03_itms.07554.07554.2	2.4515	0.2943	100.0%	1347.6322	1347.4265	20	4.736	50.0%	1	K.TYNHFEYSSAK.I	2
*	PARC_hx12_04_itms.07713.07713.2	2.5589	0.1782	99.9%	1482.5322	1482.6173	1	4.7	58.3%	1	R.GTCASEIGHMYQK.I	2

YDL077C

11.3%

1049

122881

7.1

VAM6 SGDID:S000002235, Chr IV from 320120-316971, reverse complement, Verified ORF, "Vacuolar protein that plays a critical role in the tethering steps of vacuolar membrane fusion by facilitating guanine nucleotide exchange on small guanosine triphosphatase Ypt7p"

	Filename	XCorr	DeltCN	Conf%	ObsM+H+	CalcM+H+	SpR	ZScore	Ion%	#	Sequence
*	PARC_hx12_04_itms.09452.09452.2	2.6811	0.0939	99.6%	1619.5721	1618.7814	10	3.633	53.6%	3	K.SSDITAILPTEQSQK.L	2
*	PARC_hx12_05_itms.13616.13616.2	4.7577	0.5181	100.0%	2173.0522	2173.3992	1	8.497	60.5%	2	R.YTFELDGNDATPMIIDGATK.K	2
*	PARC_hx12_05_itms.11223.11223.2	3.2862	0.3043	100.0%	1328.9722	1328.5286	1	5.702	83.3%	1	K.FQNYMVQLER.S	2
*	PARC_hx12_03_itms.11880.11880.1	1.5695	0.0235	97.9%	1076.84	1077.2218	193	3.003	57.1%	1	K.DLIDFYYK.R	1
*	PARC_hx12_04_itms.13178.13178.2	6.1684	0.3828	100.0%	2009.3522	2010.1187	1	8.217	71.9%	3	K.FLTDLVDELENDNTDQK.Q	2
*	PARC_hx12_04_itms.10953.10953.2	2.5528	0.0628	99.2%	1435.9321	1434.6323	1	3.948	72.7%	1	K.LYLENLDIPSTR.I	2
*	PARC_hx12_04_itms.09316.09316.2	3.1733	0.3568	100.0%	1395.2322	1395.5522	1	7.191	72.7%	2	K.SLLETTSVYEPR.T	2
*	PARC_hx12_04_itms.11225.11225.2	2.6866	0.2538	100.0%	1503.8522	1504.683	1	5.659	62.5%	1	K.NLPQDISLYDIGR.V	2
*	PARC_hx12_05_itms.11680.11680.2	3.629	0.2851	100.0%	1345.5721	1344.5077	1	5.521	72.7%	2	K.TLGEVINELNNK.-	2

YNL112W

11.0%

546

60999

8.8

DBP2 SGDID:S000005056, Chr XIV from 413641-414913,415916-416283, Verified ORF, "Essential ATP-dependent RNA helicase of the DEAD-box protein family, involved in nonsense-mediated mRNA decay and rRNA processing"

	Filename	XCorr	DeltCN	Conf%	ObsM+H+	CalcM+H+	SpR	ZScore	Ion%	#	Sequence
*	PARC_hx12_03_itms.07750.07750.2	2.4962	0.0527	99.2%	1280.4521	1280.3824	1	3.733	72.2%	1	K.NFYVEHESVR.D	2
*	PARC_hx12_03_itms.09970.09970.2	3.9766	0.2762	100.0%	1295.0521	1294.4473	1	5.493	80.0%	2	R.VTYLVLDEADR.M	2
	PARC_hx12_04_itms.10931.10931.2	3.7597	0.262	100.0%	1336.7722	1337.5946	1	6.358	80.0%	3	R.MLDMGFEPQIR.K	2 2
*	PARC_hx12_03_itms.08733.08733.2	4.1016	0.4099	100.0%	1231.3722	1231.4528	1	7.63	86.4%	3	R.SPIMVATDVAAR.G	2
*	PARC_hx12_05_itms.12206.12206.2	4.5161	0.4499	100.0%	1643.3922	1643.7936	1	8.359	56.7%	1	R.AGATGTAISFFTEQNK.G	2

Similarities: YOR204W(1:4)

YLR205C

11.0%

317

37179

7.8

HMX1 SGDID:S000004195, Chr XII from 553679-552726, reverse complement, Verified ORF, "ER localized, heme-binding peroxidase involved in the degradation of heme; does not exhibit heme oxygenase activity despite similarity to heme oxygenases; expression regulated by AFT1"

	Filename	XCorr	DeltCN	Conf%	ObsM+H+	CalcM+H+	SpR	ZScore	Ion%	#	Sequence
*	PARC_hx12_03_itms.11835.11835.2	6.0892	0.5337	100.0%	2046.5122	2044.3068	1	10.265	79.4%	4	R.LLNDPVTEEELQTSTILK.Q	2
*	PARC_hx12_05_itms.14147.14147.2	2.255	0.0084	98.0%	1920.9722	1920.0422	61	3.501	40.6%	1	K.GTNFFTFSDLGPTEETR.L	2

YER001W

10.9%

762

88529

7.2

MNN1 SGDID:S000000803, Chr V from 153519-155807, Verified ORF, "Alpha-1,3-mannosyltransferase, integral membrane glycoprotein of the Golgi complex, required for addition of alpha1,3-mannose linkages to N-linked and O-linked oligosaccharides, one of five S. cerevisiae proteins of the MNN1 family"

	Filename	XCorr	DeltCN	Conf%	ObsM+H+	CalcM+H+	SpR	ZScore	Ion%	#	Sequence
*	PARC_hx12_03_itms.11219.11219.2	4.3306	0.4617	100.0%	1687.5122	1685.8279	1	9.281	80.8%	3	R.TLYTLDDEWTNSVK.K	2
*	PARC_hx12_03_itms.12170.12170.2	3.1983	0.3912	100.0%	1207.3722	1207.346	1	6.558	87.5%	1	K.YDMFQAFER.I	2
*	PARC_hx12_04_itms.09191.09191.2	2.8854	0.175	100.0%	1031.2322	1031.2401	1	4.562	93.8%	1	K.VLEQGFLPK.F	2
*	PARC_hx12_05_itms.12508.12508.2	2.9665	0.2882	100.0%	1536.1522	1536.771	1	5.045	62.5%	1	R.FEGNTLPIQVVYR.G	2
*	PARC_hx12_03_itms.09419.09419.2	2.8693	0.2864	100.0%	1235.3922	1235.4222	1	5.064	83.3%	2	K.YYYITPISSK.Y	2
*	PARC_hx12_04_itms.08483.08483.2	3.9121	0.2818	100.0%	1643.2122	1642.7631	1	7.39	65.4%	2	R.TTHGELITLDEEQR.L	2
*	PARC_hx12_04_itms.09774.09774.2	3.9969	0.4065	100.0%	1711.1921	1711.823	1	7.434	73.1%	4	R.SFTEEEIKELENSR.H	2

YPR024W

10.8%

747

81772

7.1

YME1 SGDID:S000006228, Chr XVI from 610478-612721, Verified ORF, "Subunit, with Mgr1p, of the mitochondrial inner membrane i-AAA protease complex, which is responsible for degradation of unfolded or misfolded mitochondrial gene products; mutation causes an elevated rate of mitochondrial turnover"

	Filename	XCorr	DeltCN	Conf%	ObsM+H+	CalcM+H+	SpR	ZScore	Ion%	#	Sequence
*	PARC_hx12_05_itms.09459.09459.2	3.3124	0.2773	100.0%	2126.8123	2127.272	2	6.205	44.4%	1	R.EQEANKDLTSPDAQAAFYK.L	2
*	PARC_hx12_03_itms.09003.09003.2	2.8798	0.3131	100.0%	1429.4521	1427.5536	1	5.595	62.5%	1	K.DLTSPDAQAAFYK.L	2
*	PARC_hx12_05_itms.11590.11590.2	3.0261	0.1891	100.0%	1681.5322	1680.9445	2	4.915	57.7%	1	K.LLLQSNYPQYVVSR.F	2
*	PARC_hx12_05_itms.09514.09514.2	2.7648	0.178	100.0%	1097.4722	1097.2999	83	5.207	59.1%	1	K.GVLLTGPPGTGK.T	2
*	PARC_hx12_03_itms.09213.09213.2	3.3979	0.3943	100.0%	1126.1122	1126.2981	1	6.719	83.3%	2	K.VVNVDLPDVR.G	2
*	PARC_hx12_03_itms.10485.10485.2	3.9352	0.3652	100.0%	1512.3722	1512.7465	1	7.312	69.2%	4	K.ITLADNVDPTIIAR.G	2
*	PARC_hx12_03_itms.13004.13004.2	4.0581	0.2708	100.0%	1371.6721	1372.5585	1	5.764	86.4%	3	R.DIADNEVIELLK.D	2

YPL131W

10.8%

297

33715

6.8

RPL5 SGDID:S000006052, Chr XVI from 303120-304013, Verified ORF, "Protein component of the large (60S) ribosomal subunit with similarity to E. coli L18 and rat L5 ribosomal proteins; binds 5S rRNA and is required for 60S subunit assembly"

	Filename	XCorr	DeltCN	Conf%	ObsM+H+	CalcM+H+	SpR	ZScore	Ion%	#	Sequence
*	PARC_hx12_03_itms.07676.07676.2	3.9509	0.3809	100.0%	1560.1721	1559.6353	1	6.706	64.3%	1	K.GASDGGLYVPHSENR.F	2
*	PARC_hx12_05_itms.16496.16496.2	3.8753	0.3975	100.0%	2093.612	2094.285	1	7.599	59.4%	4	R.FPGWDFETEEIDPELLR.S	2

YKL064W

10.7%

969

109736

7.5

MNR2 SGDID:S000001547, Chr XI from 317408-320317, Verified ORF, "Putative magnesium transporter; has similarity to Alr1p and Alr2p, which mediate influx of Mg2+ and other divalent cations"

	Filename	XCorr	DeltCN	Conf%	ObsM+H+	CalcM+H+	SpR	ZScore	Ion%	#	Sequence
*	PARC_hx12_04_itms.10854.10854.2	1.6329	0.0823	98.6%	1846.2922	1846.0471	8	3.519	37.5%	1	K.DEGVPLLSPYSSSPQLR.K	2
*	PARC_hx12_03_itms.08118.08118.2	4.0262	0.3815	100.0%	1814.2722	1814.0637	1	7.692	62.5%	2	R.EGPQSVSSTVQPQPIMK.F	2
*	PARC_hx12_03_itms.07570.07570.2	1.9619	0.0319	98.7%	830.27216	829.928	18	3.039	75.0%	1	K.FSTPSYK.K	2
*	PARC_hx12_04_itms.12347.12347.2	2.7998	0.4003	100.0%	1584.4521	1582.7162	3	6.659	62.5%	1	K.AWPDCTVLEEFSK.E	2
*	PARC_hx12_05_itms.11948.11948.2	3.7668	0.2742	100.0%	1537.0122	1537.7562	1	6.448	61.5%	3	K.PIVTNIDVPELGNR.R	2
*	PARC_hx12_03_itms.07552.07552.2	2.6629	0.0505	99.4%	1034.2722	1034.2158	112	4.206	61.1%	1	R.PMVLGSNSTK.D	2
*	PARC_hx12_04_itms.09479.09479.2	4.2307	0.3555	100.0%	1412.9722	1413.617	1	6.807	79.2%	6	R.IQSGLQDNLLVGR.N	2
*	PARC_hx12_03_itms.08454.08454.2	4.384	0.4531	100.0%	1345.7522	1346.5236	1	7.949	83.3%	2	K.AETVSQLQGLTAK.N	2

YIL117C

10.7%

318

34651

7.1

PRM5 SGDID:S000001379, Chr IX from 141566-140610, reverse complement, Verified ORF, "Pheromone-regulated protein, predicted to have 1 transmembrane segment; induced during cell integrity signaling"

	Filename	XCorr	DeltCN	Conf%	ObsM+H+	CalcM+H+	SpR	ZScore	Ion%	#	Sequence
*	PARC_hx12_05_itms.11115.11115.2	4.0023	0.3248	100.0%	1223.1122	1221.3556	1	6.84	90.0%	2	R.PLFSLASESNR.N	2
*	PARC_hx12_05_itms.13526.13526.2	3.6278	0.3252	100.0%	1569.3322	1568.81	1	5.424	73.1%	1	R.NSLFISPTGDILYK.T	2
*	PARC_hx12_03_itms.08190.08190.2	3.0639	0.3126	100.0%	958.1322	958.146	2	6.047	87.5%	1	K.GNLLVVQSK.R	2

YDR229W

10.6%

453

49976

5.0

IVY1 SGDID:S000002637, Chr IV from 924779-926140, Verified ORF, "Phospholipid-binding protein that interacts with both Ypt7p and Vps33p, may partially counteract the action of Vps33p and vice versa, localizes to the rim of the vacuole as cells approach stationary phase"

	Filename	XCorr	DeltCN	Conf%	ObsM+H+	CalcM+H+	SpR	ZScore	Ion%	#	Sequence
*	PARC_hx12_05_itms.10120.10120.2	3.6481	0.2671	100.0%	1773.5521	1773.8156	1	6.078	60.7%	3	R.VDWDNGNHFDVSPDR.Y	2
*	PARC_hx12_03_itms.10191.10191.2	3.1145	0.2723	100.0%	1261.3121	1261.4178	1	5.443	80.0%	3	K.ETQEALSTLLR.N	2
*	PARC_hx12_05_itms.27346.27346.2	2.8064	0.274	100.0%	2632.0723	2631.8523	1	5.871	42.9%	3	K.YFNDLLGDNLIDDIDEFELQTK.I	2

U	YGL147C	2	2	10.5%	191	21569	9.7	RPL9A SGDID:S000003115, Chr VII from 228334-227759, reverse complement, Verified ORF, "Protein component of the large (60S) ribosomal subunit, nearly identical to Rpl9Bp and has similarity to E. coli L6 and rat L9 ribosomal proteins"
U	YNL067W	2	2	10.5%	191	21657	9.7	RPL9B SGDID:S000005011, Chr XIV from 499682-500257, Verified ORF, "Protein component of the large (60S) ribosomal subunit, nearly identical to Rpl9Ap and has similarity to E. coli L6 and rat L9 ribosomal proteins"

	Filename	XCorr	DeltCN	Conf%	ObsM+H+	CalcM+H+	SpR	ZScore	Ion%	#	Sequence
	PARC_hx12_04_itms.07974.07974.2	2.3563	0.0666	99.4%	961.6922	961.1057	3	4.562	85.7%	1	K.HIDVTFTK.V	2
	PARC_hx12_05_itms.12357.12357.2	3.9752	0.123	100.0%	1278.4521	1278.5066	1	6.539	81.8%	1	K.SLVDNMITGVTK.G	2

contaminant_KERATIN15

10.3%

629

64511

6.5

no description

	Filename	XCorr	DeltCN	Conf%	ObsM+H+	CalcM+H+	SpR	ZScore	Ion%	#	Sequence
	PARC_hx12_05_itms.12299.12299.2	3.3261	0.3831	100.0%	1398.0521	1398.6017	1	6.622	68.2%	1	K.TLNNKFASFIDK.V	2 2 2 2 2
	PARC_hx12_04_itms.08210.08210.2	4.7604	0.0263	99.8%	1476.5322	1477.7007	1	6.099	90.9%	15	R.FLEQQNKVLETK.W	2
	PARC_hx12_04_itms.08957.08957.2	2.9215	0.3489	100.0%	1550.6522	1551.7118	1	6.597	65.4%	2	H.ISDTSVVLSMDNNR.S	2 2 2
*	PARC_hx12_03_itms.13778.13778.2	5.0686	0.3685	100.0%	1302.8522	1303.4521	1	7.243	79.2%	43	R.SLDLDSIIAEVGA.Q	2
*	PARC_hx12_04_itms.13389.13389.1	3.2551	0.1977	100.0%	1304.65	1303.4521	5	4.806	58.3%	7	R.SLDLDSIIAEVGA.Q	1
*	PARC_hx12_03_itms.13778.13778.3	3.1933	0.3059	100.0%	1953.7743	1952.1223	2	6.196	32.4%	2	R.SLDLDSIIAEVGAQYEDI.A	2
	PARC_hx12_03_itms.09040.09040.1	2.8285	0.2189	100.0%	1139.45	1140.2965	2	5.467	75.0%	1	R.DYQELMNVK.L	1 1
	PARC_hx12_03_itms.09062.09062.2	3.309	0.2522	100.0%	1140.4922	1140.2965	4	5.285	81.2%	1	R.DYQELMNVK.L	2 2

YML115C

10.3%

535

61092

5.4

VAN1 SGDID:S000004583, Chr XIII from 41794-40187, reverse complement, Verified ORF, "Component of the mannan polymerase I; forms a complex with Mnn9p, which is involved in in mannan synthesis; mutants are vanadate-resistant"

	Filename	XCorr	DeltCN	Conf%	ObsM+H+	CalcM+H+	SpR	ZScore	Ion%	#	Sequence
*	PARC_hx12_03_itms.10550.10550.2	3.2533	0.3419	100.0%	1426.3722	1426.5284	1	5.508	66.7%	1	K.DFGQVIGQGFSDR.H	2
*	PARC_hx12_04_itms.12058.12058.2	3.9831	0.4116	100.0%	2273.372	2272.4297	1	7.397	50.0%	2	K.TLDEDDVIVEGYAEYPTWR.V	2
*	PARC_hx12_04_itms.11375.11375.2	4.5995	0.4097	100.0%	2241.3323	2242.4014	1	7.398	50.0%	2	R.DAEGDPNEAVDLDGVGGVSILAK.A	2

YML123C

10.2%

587

64382

6.4

PHO84 SGDID:S000004592, Chr XIII from 25801-24038, reverse complement, Verified ORF, "High-affinity inorganic phosphate (Pi) transporter and low-affinity manganese transporter; regulated by Pho4p and Spt7p; mutation confers resistance to arsenate; exit from the ER during maturation requires Pho86p"

	Filename	XCorr	DeltCN	Conf%	ObsM+H+	CalcM+H+	SpR	ZScore	Ion%	#	Sequence
*	PARC_hx12_04_itms.12056.12056.2	5.5129	0.468	100.0%	1936.5922	1936.1284	1	8.654	68.8%	7	R.LALESIDDEGFGWQQVK.T	2
*	PARC_hx12_03_itms.07641.07641.2	4.9779	0.4639	100.0%	1473.2922	1473.5798	1	8.558	84.6%	2	K.LELAAAAQEQDGEK.K	2
*	PARC_hx12_03_itms.07482.07482.2	4.0489	0.3534	100.0%	1601.3121	1601.7539	1	7.478	82.1%	1	K.LELAAAAQEQDGEKK.I	2
*	PARC_hx12_03_itms.08669.08669.2	4.9053	0.5434	100.0%	1815.7922	1816.9373	1	8.705	73.3%	1	K.IHDTSDEDMAINGLER.A	2
*	PARC_hx12_04_itms.06734.06734.1	3.0319	0.3688	100.0%	1086.79	1087.1777	1	6.692	63.6%	1	R.STAHGISAASGK.V	1
*	PARC_hx12_04_itms.06716.06716.2	3.3989	0.396	100.0%	1087.6322	1087.1777	1	8.419	81.8%	1	R.STAHGISAASGK.V	2

contaminant_KERATIN10

10.2%

400

44106

5.1

no description

Filename	XCorr	DeltCN	Conf%	ObsM+H+	CalcM+H+	SpR	ZScore	Ion%	#	Sequence
PARC_hx12_03_itms.07497.07497.2	2.3543	0.079	99.4%	1223.2122	1223.3715	2	3.863	77.8%	1	R.TKFETEQALR.M	2 2
PARC_hx12_03_itms.09254.09254.2	4.0494	0.334	100.0%	1205.2522	1205.3716	1	6.725	95.0%	2	R.MSVEADINGLR.R	2 2
PARC_hx12_03_itms.09638.09638.1	2.5197	0.2563	100.0%	1030.55	1030.2096	57	5.429	62.5%	2	R.VLDELTLAR.T	1 1 1 1 1
PARC_hx12_03_itms.09585.09585.2	3.9245	0.312	100.0%	1030.6522	1030.2096	1	6.264	93.8%	2	R.VLDELTLAR.T	2 2 2 2 2
PARC_hx12_03_itms.10398.10398.2	3.9964	0.3116	100.0%	1277.5322	1277.4755	1	6.059	85.0%	2	R.TDLEMQIEGLK.E	2 2

Similarities: contaminant_KERATIN05(3:2)
contaminant_KERATIN08(3:2)
contaminant_KERATIN12(3:2)
contaminant_KERATIN07(2:3)

YDR345C

567

62558

7.1

HXT3 SGDID:S000002753, Chr IV from 1164652-1162949, reverse complement, Verified ORF, "Low affinity glucose transporter of the major facilitator superfamily, expression is induced in low or high glucose conditions"

	Filename	XCorr	DeltCN	Conf%	ObsM+H+	CalcM+H+	SpR	ZScore	Ion%	#	Sequence
*	PARC_hx12_04_itms.10869.10869.2	5.8499	0.377	100.0%	2247.2922	2248.368	1	8.315	65.0%	3	K.GVQDDFQAEADQVLTNPNTGK.G	2
*	PARC_hx12_03_itms.08446.08446.2	4.2921	0.3968	100.0%	1364.3322	1364.4979	1	6.95	86.4%	1	R.YLVEAGQIDEAR.A	2
*	PARC_hx12_05_itms.12980.12980.2	2.4643	0.3199	100.0%	1382.3722	1382.5156	2	5.698	61.5%	1	R.AAGSASWGELFTGK.P	2
*	PARC_hx12_03_itms.07967.07967.2	1.9355	0.0199	98.1%	1120.1921	1119.2223	32	4.001	66.7%	1	K.SASWVPTSQR.G	2

YML085C

447

49800

5.1

TUB1 SGDID:S000004550, Chr XIII from 99400-99376,99259-97941, reverse complement, Verified ORF, "Alpha-tubulin; associates with beta-tubulin (Tub2p) to form tubulin dimer, which polymerizes to form microtubules"

	Filename	XCorr	DeltCN	Conf%	ObsM+H+	CalcM+H+	SpR	ZScore	Ion%	#	Sequence
	PARC_hx12_04_itms.11918.11918.2	4.8837	0.4251	100.0%	1745.2322	1745.9701	1	7.55	78.6%	5	R.AIYVDLEPNVIDEVR.N	2
*	PARC_hx12_03_itms.10226.10226.2	2.5082	0.2362	100.0%	1029.8922	1030.1661	3	4.877	68.8%	1	R.EILGDVLDR.I	2
*	PARC_hx12_05_itms.11112.11112.2	3.7393	0.4131	100.0%	2303.172	2304.528	1	7.598	50.0%	1	K.IGICYEPPTATPNSQLATVDR.A	2

YDL014W

327

34465

10.2

NOP1 SGDID:S000002172, Chr IV from 427361-428344, Verified ORF, "Nucleolar protein, component of the small subunit processome complex, which is required for processing of pre-18S rRNA; has similarity to mammalian fibrillarin"

	Filename	XCorr	DeltCN	Conf%	ObsM+H+	CalcM+H+	SpR	ZScore	Ion%	#	Sequence
*	PARC_hx12_05_itms.08408.08408.2	2.6165	0.2462	100.0%	887.3122	887.02924	1	5.033	100.0%	1	R.HAGVYIAR.G	2
*	PARC_hx12_03_itms.07456.07456.2	2.7286	0.1037	99.8%	1004.4122	1003.1839	2	4.454	81.2%	1	R.GKEDLLVTK.N	2
*	PARC_hx12_04_itms.09916.09916.2	4.8919	0.5409	100.0%	1770.2522	1769.872	1	9.674	76.7%	3	K.ANCIDSTVDAETVFAR.E	2

YNL069C

198

22249

10.5

RPL16B SGDID:S000005013, Chr XIV from 495002-494975,494525-493957, reverse complement, Verified ORF, "N-terminally acetylated protein component of the large (60S) ribosomal subunit, binds to 5.8 S rRNA; has similarity to Rpl16Ap, E. coli L13 and rat L13a ribosomal proteins; transcriptionally regulated by Rap1p"

	Filename	XCorr	DeltCN	Conf%	ObsM+H+	CalcM+H+	SpR	ZScore	Ion%	#	Sequence
*	PARC_hx12_05_itms.13166.13166.2	4.1221	0.3416	100.0%	1354.0521	1354.5052	1	6.641	86.4%	3	R.AEALNISGEFFR.N	2
	PARC_hx12_04_itms.08133.08133.2	1.7496	0.1652	99.8%	883.7922	882.094	17	3.937	78.6%	1	R.VVVPQALR.V	2 2

Similarities: YIL133C(1:1)

YIL133C

199

22201

10.5

RPL16A SGDID:S000001395, Chr IX from 99416-99386,99095-98527, reverse complement, Verified ORF, "N-terminally acetylated protein component of the large (60S) ribosomal subunit, binds to 5.8 S rRNA; has similarity to Rpl16Bp, E. coli L13 and rat L13a ribosomal proteins; transcriptionally regulated by Rap1p"

	Filename	XCorr	DeltCN	Conf%	ObsM+H+	CalcM+H+	SpR	ZScore	Ion%	#	Sequence
*	PARC_hx12_04_itms.11420.11420.2	4.0607	0.2141	100.0%	1412.2522	1412.5419	1	6.313	86.4%	2	R.AEELNISGEFFR.N	2
	PARC_hx12_04_itms.08133.08133.2	1.7496	0.1652	99.8%	883.7922	882.094	17	3.937	78.6%	1	R.VVVPQALR.V	2 2

Similarities: YNL069C(1:1)

YGL234W

10.0%

802

86068

5.3

ADE5,7 SGDID:S000003203, Chr VII from 56482-58890, Verified ORF, "Bifunctional enzyme of the 'de novo' purine nucleotide biosynthetic pathway, contains aminoimidazole ribotide synthetase and glycinamide ribotide synthetase activities"

	Filename	XCorr	DeltCN	Conf%	ObsM+H+	CalcM+H+	SpR	ZScore	Ion%	#	Sequence
*	PARC_hx12_05_itms.12597.12597.2	4.183	0.3627	100.0%	1656.5521	1656.917	1	7.546	66.7%	3	K.GVIIPSSIDESVQAIK.D	2
*	PARC_hx12_05_itms.12969.12969.2	4.5633	0.4208	100.0%	1675.2322	1674.8943	1	7.945	80.8%	3	K.TNQLVPEVLEYNVR.F	2
*	PARC_hx12_03_itms.08517.08517.2	3.5121	0.4496	100.0%	1290.2122	1290.4594	1	7.987	81.8%	2	R.VLSVTSTAQDLR.T	2
*	PARC_hx12_03_itms.09130.09130.2	4.0536	0.4753	100.0%	1720.4922	1718.8584	1	8.51	65.6%	4	R.QNEDTLLVGATDGVGTK.L	2
*	PARC_hx12_03_itms.09173.09173.2	3.2235	0.3239	100.0%	1158.1921	1158.3373	1	6.028	80.0%	3	K.TLGEGILEPTK.I	2
*	PARC_hx12_03_itms.09945.09945.2	2.5813	0.2884	100.0%	1219.3722	1220.3856	1	5.071	88.9%	1	R.VDMSTWEVPR.V	2

YNL178W

10.0%

240

26503

9.4

RPS3 SGDID:S000005122, Chr XIV from 302682-303404, Verified ORF, "Protein component of the small (40S) ribosomal subunit, has apurinic/apyrimidinic (AP) endonuclease activity; essential for viability; has similarity to E. coli S3 and rat S3 ribosomal proteins"

	Filename	XCorr	DeltCN	Conf%	ObsM+H+	CalcM+H+	SpR	ZScore	Ion%	#	Sequence
*	PARC_hx12_04_itms.09934.09934.2	2.4759	0.2347	100.0%	1354.4922	1353.5608	1	4.779	68.2%	1	K.YAPGTIVLYAER.V	2
*	PARC_hx12_03_itms.10715.10715.2	2.4339	0.2093	100.0%	1267.4321	1267.5083	167	4.563	54.5%	2	K.ALPDAVTIIEPK.E	2

YLR441C

9.8%

255

28743

10.0

RPS1A SGDID:S000004433, Chr XII from 1018904-1018137, reverse complement, Verified ORF, "Ribosomal protein 10 (rp10) of the small (40S) subunit; nearly identical to Rps1Bp and has similarity to rat S3a ribosomal protein"

	Filename	XCorr	DeltCN	Conf%	ObsM+H+	CalcM+H+	SpR	ZScore	Ion%	#	Sequence
*	PARC_hx12_03_itms.08522.08522.2	3.665	0.2979	100.0%	1361.9722	1362.523	1	6.23	70.8%	1	K.EVQGSTLAQLTSK.L	2
*	PARC_hx12_03_itms.10472.10472.2	2.6801	0.1222	99.8%	1337.2322	1337.5126	19	3.689	63.6%	1	K.VTGFKDEVLETV.-	2

YJL008C

9.7%

568

61662

5.7

CCT8 SGDID:S000003545, Chr X from 421578-419872, reverse complement, Verified ORF, "Subunit of the cytosolic chaperonin Cct ring complex, related to Tcp1p, required for the assembly of actin and tubulins in vivo"

	Filename	XCorr	DeltCN	Conf%	ObsM+H+	CalcM+H+	SpR	ZScore	Ion%	#	Sequence
*	PARC_hx12_05_itms.11363.11363.2	3.1131	0.2867	100.0%	1332.4521	1332.6012	1	6.136	68.2%	2	K.IIITNDAATMLR.E	2
*	PARC_hx12_05_itms.12699.12699.2	2.6054	0.3035	100.0%	1780.6721	1779.9941	1	5.175	53.3%	1	K.VAVFTCPLDIANTETK.G	2
*	PARC_hx12_04_itms.11042.11042.2	3.5878	0.4657	100.0%	1652.9521	1653.9133	1	7.161	63.3%	3	R.LGAPTPEELGLVETVK.T	2
*	PARC_hx12_03_itms.11265.11265.2	2.6619	0.2971	100.0%	1327.1921	1327.492	1	5.73	65.0%	1	R.EENIYDMLATK.K	2

YLL048C

9.5%

1661

189161

8.1

YBT1 SGDID:S000003971, Chr XII from 46264-41279, reverse complement, Verified ORF, "Transporter of the ATP-binding cassette (ABC) family involved in bile acid transport; similar to mammalian bile transporters"

	Filename	XCorr	DeltCN	Conf%	ObsM+H+	CalcM+H+	SpR	ZScore	Ion%	#	Sequence
*	PARC_hx12_05_itms.14778.14778.2	2.847	0.2236	100.0%	1597.8522	1597.7264	1	4.919	72.7%	1	R.FWFYDDVTQYGR.T	2
*	PARC_hx12_03_itms.08595.08595.2	3.5194	0.2361	100.0%	1062.2122	1062.2137	1	5.28	93.8%	1	K.LNEAFQAIR.I	2
*	PARC_hx12_04_itms.10896.10896.2	2.7207	0.1562	99.9%	1379.4922	1379.468	4	5.219	66.7%	2	K.YFSWEENFEK.D	2
*	PARC_hx12_04_itms.08338.08338.2	2.9564	0.2115	100.0%	1142.9922	1142.3408	5	4.738	63.6%	1	K.LNVVIGPTGSGK.T	2
*	PARC_hx12_04_itms.11871.11871.2	3.806	0.208	100.0%	1328.2722	1328.5083	1	5.36	81.8%	1	R.NAELVVLLEDGR.V	2
*	PARC_hx12_04_itms.08962.08962.2	3.0761	0.2572	100.0%	1487.7122	1487.7112	1	5.982	62.5%	1	R.VKDQGDPIDMLQK.G	2
*	PARC_hx12_03_itms.10530.10530.2	2.1067	0.0979	99.5%	1107.2722	1107.2487	34	3.906	66.7%	1	K.GLFGEDELVK.S	2
*	PARC_hx12_03_itms.08229.08229.2	1.7322	0.1821	99.8%	1011.65216	1012.11	5	4.362	68.8%	1	R.FFDATPTGR.I	2
*	PARC_hx12_03_itms.09950.09950.2	3.1718	0.2349	100.0%	1457.9122	1458.6115	1	5.904	79.2%	2	K.IDNIDISGVDLQR.L	2
*	PARC_hx12_03_itms.09542.09542.2	3.7051	0.3382	100.0%	1472.3722	1472.5077	1	5.743	68.2%	1	K.TNLDPYDEFSDR.Q	2
*	PARC_hx12_04_itms.08882.08882.2	4.9819	0.3638	100.0%	1686.5721	1686.8625	1	6.682	82.1%	3	R.VNLISEEQLQQGATR.E	2
*	PARC_hx12_05_itms.12407.12407.3	4.3813	0.2946	100.0%	3184.7344	3186.3298	1	5.841	25.9%	1	A.SSTNSENVNKFLDLSSEISEGGSNLSQGQR.Q	3
*	PARC_hx12_05_itms.12407.12407.2	5.9292	0.4965	100.0%	2123.4922	2125.2566	1	9.287	73.7%	1	K.FLDLSSEISEGGSNLSQGQR.Q	3

YBR127C

9.5%

517

57749

5.1

VMA2 SGDID:S000000331, Chr II from 492816-491263, reverse complement, Verified ORF, "Subunit B of the eight-subunit V1 peripheral membrane domain of the vacuolar H+-ATPase (V-ATPase), an electrogenic proton pump found throughout the endomembrane system; contains nucleotide binding sites; also detected in the cytoplasm"

	Filename	XCorr	DeltCN	Conf%	ObsM+H+	CalcM+H+	SpR	ZScore	Ion%	#	Sequence
*	PARC_hx12_04_itms.07569.07569.2	2.5813	0.2347	100.0%	1245.1122	1245.424	1	4.512	70.0%	1	K.AVEQGFNVKPR.L	2
*	PARC_hx12_04_itms.11157.11157.2	3.6566	0.3271	100.0%	1704.2122	1704.9207	1	6.436	71.4%	2	R.YNEIVNLTLPDGTVR.Q	2
*	PARC_hx12_05_itms.13710.13710.2	3.281	0.294	100.0%	1705.1322	1704.9207	1	5.809	60.7%	1	R.TSLFLNLANDPTIER.I	2
*	PARC_hx12_03_itms.09562.09562.2	2.3111	0.0714	99.5%	1071.1921	1071.1748	33	3.013	85.7%	1	K.ILDEFYDR.A	2

U	YDL082W	2	3	9.5%	199	22554	11.2	RPL13A SGDID:S000002240, Chr IV from 308424-308427,308793-309388, Verified ORF, "Protein component of the large (60S) ribosomal subunit, nearly identical to Rpl13Bp; not essential for viability; has similarity to rat L13 ribosomal protein"
U	YMR142C	2	3	9.5%	199	22525	11.1	RPL13B SGDID:S000004750, Chr XIII from 551206-551203,550800-550205, reverse complement, Verified ORF, "Protein component of the large (60S) ribosomal subunit, nearly identical to Rpl13Ap; not essential for viability; has similarity to rat L13 ribosomal protein"

	Filename	XCorr	DeltCN	Conf%	ObsM+H+	CalcM+H+	SpR	ZScore	Ion%	#	Sequence
	PARC_hx12_03_itms.07658.07658.2	3.3504	0.3881	100.0%	965.2922	965.0971	1	7.391	77.8%	1	K.AAGLTAAYAR.T	2
	PARC_hx12_04_itms.07694.07694.2	2.8283	0.2038	100.0%	982.1722	982.1276	1	5.213	87.5%	2	R.TIGIAVDHR.R	2

YLR044C

9.4%

563

61495

6.2

PDC1 SGDID:S000004034, Chr XII from 234082-232391, reverse complement, Verified ORF, "Major of three pyruvate decarboxylase isozymes, key enzyme in alcoholic fermentation, decarboxylates pyruvate to acetaldehyde; subject to glucose-, ethanol-, and autoregulation; involved in amino acid catabolism"

	Filename	XCorr	DeltCN	Conf%	ObsM+H+	CalcM+H+	SpR	ZScore	Ion%	#	Sequence
	PARC_hx12_04_itms.09386.09386.2	4.7342	0.5015	100.0%	1998.4122	1999.1063	1	9.205	58.3%	2	R.WAGNANELNAAYAADGYAR.I	2
*	PARC_hx12_05_itms.14027.14027.2	2.6754	0.2649	99.5%	2118.892	2120.3796	3	5.43	39.5%	1	N.ISETTAMITDIATAPAEIDR.C	2
*	PARC_hx12_03_itms.07670.07670.2	3.7903	0.3333	100.0%	1337.8322	1338.5468	1	5.915	73.1%	1	R.TPANAAVPASTPLK.Q	2

YBR287W

9.4%

427

47506

4.9

YBR287W SGDID:S000000491, Chr II from 776567-777850, Uncharacterized ORF, "Protein of unknown function; mutation results in a zinc sensitive phenotype"

	Filename	XCorr	DeltCN	Conf%	ObsM+H+	CalcM+H+	SpR	ZScore	Ion%	#	Sequence
*	PARC_hx12_04_itms.10872.10872.2	4.307	0.4539	100.0%	3157.1921	3158.2268	1	8.616	40.0%	2	R.TPNIDNEELVNEEQEEQELLEEENNR.M	2
*	PARC_hx12_03_itms.11148.11148.3	4.025	0.208	100.0%	3157.4343	3158.2268	1	5.395	28.0%	1	R.TPNIDNEELVNEEQEEQELLEEENNR.M	3
*	PARC_hx12_04_itms.08951.08951.2	3.3486	0.3788	100.0%	1460.2322	1460.5989	1	6.873	57.7%	1	R.MNSSFLSSSSIGDK.I	2

YML048W

9.4%

403

45870

7.1

GSF2 SGDID:S000004511, Chr XIII from 178426-179637, Verified ORF, "ER localized integral membrane protein that may promote secretion of certain hexose transporters, including Gal2p; involved in glucose-dependent repression"

	Filename	XCorr	DeltCN	Conf%	ObsM+H+	CalcM+H+	SpR	ZScore	Ion%	#	Sequence
*	PARC_hx12_03_itms.10475.10475.2	3.8441	0.3813	100.0%	2149.9521	2150.2622	1	7.699	50.0%	1	R.ATYDDYQTNYYNYVIDK.M	2
*	PARC_hx12_05_itms.13535.13535.2	3.9507	0.5035	100.0%	2127.5322	2127.3616	1	8.999	55.0%	1	K.AAAPGIQLVAGEGFQSPLEDR.F	2

YOR171C

9.3%

624

69639

6.4

LCB4 SGDID:S000005697, Chr XV from 653884-652010, reverse complement, Verified ORF, "Sphingoid long-chain base kinase, responsible for synthesis of long-chain base phosphates, which function as signaling molecules, regulates synthesis of ceramide from exogenous long-chain bases, localizes to the Golgi and late endosomes"

	Filename	XCorr	DeltCN	Conf%	ObsM+H+	CalcM+H+	SpR	ZScore	Ion%	#	Sequence
*	PARC_hx12_03_itms.10100.10100.2	3.1704	0.193	100.0%	1172.3922	1172.4075	1	5.391	80.0%	1	R.AILTDEGVLIK.S	2
*	PARC_hx12_05_itms.14456.14456.2	3.5024	0.2884	100.0%	1615.6522	1616.8546	1	6.064	65.4%	1	K.DNQQLIELTFAVPK.G	2
*	PARC_hx12_03_itms.10895.10895.2	4.3532	0.3543	100.0%	2020.5322	2021.1425	1	6.426	55.6%	2	R.ANTGEENISSGTVEEILEK.S	2
*	PARC_hx12_03_itms.11324.11324.2	4.4152	0.4073	100.0%	1682.4321	1682.7838	1	6.939	76.9%	1	K.DELSPNFLNEDNFK.L	2

contaminant_KERATIN20

9.3%

483

53748

5.4

no description

	Filename	XCorr	DeltCN	Conf%	ObsM+H+	CalcM+H+	SpR	ZScore	Ion%	#	Sequence
	PARC_hx12_05_itms.12299.12299.2	3.3261	0.3831	100.0%	1398.0521	1398.6017	1	6.622	68.2%	1	K.TLNNKFASFIDK.V	2 2 2 2 2
	PARC_hx12_03_itms.07097.07097.1	1.5121	0.0459	97.9%	1308.64	1309.4215	60	2.933	50.0%	1	K.NKYEDEINKR.T	1 1 1 1
	PARC_hx12_03_itms.07244.07244.2	3.0535	0.1726	100.0%	1309.4122	1309.4215	3	4.321	77.8%	8	K.NKYEDEINKR.T	2 2 2 2
	PARC_hx12_03_itms.07070.07070.3	2.4496	0.1999	100.0%	1309.6743	1309.4215	14	4.366	50.0%	1	K.NKYEDEINKR.T	3 3 3 3
*	PARC_hx12_03_itms.09681.09681.2	4.0574	0.2063	100.0%	1499.6322	1501.6395	1	5.286	80.8%	1	Q.RASLEAAIADAEQR.G	2
	PARC_hx12_03_itms.08451.08451.2	2.6417	0.1348	99.9%	1154.3322	1154.3234	6	4.434	75.0%	1	R.EYQELMNVK.L	2 2 2

U	YDR038C	7	10	9.2%	1091	120296	5.5	ENA5 SGDID:S000002445, Chr IV from 530693-527418, reverse complement, Verified ORF, "Protein with similarity to P-type ATPase sodium pumps"
U	YDR040C	7	10	9.2%	1091	120357	5.6	ENA1 SGDID:S000002447, Chr IV from 538463-535188, reverse complement, Verified ORF, "P-type ATPase sodium pump, involved in Na+ and Li+ efflux to allow salt tolerance"
U	YDR039C	7	10	9.2%	1091	120317	5.5	ENA2 SGDID:S000002446, Chr IV from 534578-531303, reverse complement, Verified ORF, "P-type ATPase sodium pump, involved in Na+ efflux to allow salt tolerance; likely not involved in Li+ efflux"

Filename	XCorr	DeltCN	Conf%	ObsM+H+	CalcM+H+	SpR	ZScore	Ion%	#	Sequence
PARC_hx12_05_itms.08525.08525.2	2.648	0.2167	100.0%	1208.6522	1208.3628	1	4.732	75.0%	1	K.NLSSPNAHVIR.N	2
PARC_hx12_03_itms.11190.11190.2	5.4681	0.4663	100.0%	1953.2922	1953.1101	1	9.266	64.7%	3	K.NFDTDESLLTGESLPVSK.D	2
PARC_hx12_03_itms.08736.08736.2	3.0245	0.2366	100.0%	1865.9722	1866.9792	1	5.21	50.0%	1	K.DANLVFGKEEETSVGDR.L	2
PARC_hx12_03_itms.13052.13052.2	3.5214	0.2371	100.0%	1580.3922	1579.762	1	5.853	70.8%	1	K.DLPEDIDMDLFQK.W	2
PARC_hx12_03_itms.08632.08632.2	2.1045	0.0823	99.2%	1251.4722	1252.3696	68	3.899	60.0%	2	K.NVYSLSNEGLR.V	2
PARC_hx12_04_itms.07600.07600.2	2.5637	0.1404	99.9%	870.2922	870.0575	6	4.496	83.3%	1	R.MIEALHR.R	2
PARC_hx12_05_itms.17602.17602.2	3.9124	0.3814	100.0%	2465.632	2465.633	1	8.302	50.0%	1	K.EASDIVLSDDNFASILNAVEEGR.R	2

YOL060C

9.2%

706

77712

6.7

MAM3 SGDID:S000005421, Chr XV from 216136-214016, reverse complement, Verified ORF, "Protein required for normal mitochondrial morphology, has similarity to hemolysins"

	Filename	XCorr	DeltCN	Conf%	ObsM+H+	CalcM+H+	SpR	ZScore	Ion%	#	Sequence
*	PARC_hx12_04_itms.08208.08208.1	1.968	0.0879	99.0%	927.52	928.0354	27	3.883	64.3%	1	K.IFNSGFSR.I	1
*	PARC_hx12_04_itms.07049.07049.2	2.1228	0.2297	100.0%	932.4522	932.09186	1	4.797	71.4%	1	K.AHMCVVSK.E	2
*	PARC_hx12_03_itms.07895.07895.3	5.4941	0.3769	100.0%	3328.6443	3329.4343	1	7.331	28.3%	1	K.AADQADESSPLLSPSNSNHPSEHPQQDLNNK.S	3
*	PARC_hx12_05_itms.11180.11180.2	3.4219	0.2995	100.0%	2013.6322	2014.1564	1	6.173	52.9%	2	K.SLSAEEQQLLSDHAELSR.Q	2

YOR310C

9.2%

511

56956

8.9

NOP58 SGDID:S000005837, Chr XV from 898355-896820, reverse complement, Verified ORF, "Protein involved in pre-rRNA processing, 18S rRNA synthesis, and snoRNA synthesis; component of the small subunit processome complex, which is required for processing of pre-18S rRNA"

	Filename	XCorr	DeltCN	Conf%	ObsM+H+	CalcM+H+	SpR	ZScore	Ion%	#	Sequence
*	PARC_hx12_04_itms.12309.12309.2	2.0209	0.0040	97.7%	1922.8121	1922.1572	8	3.462	40.6%	1	K.EYLPELLPGMSDNDLSK.M	2
*	PARC_hx12_03_itms.12000.12000.2	3.5905	0.382	100.0%	1960.3121	1961.0869	1	5.954	50.0%	2	K.ASETDLSEILPEEIEER.V	2
*	PARC_hx12_04_itms.09269.09269.2	3.2847	0.3112	100.0%	1315.2722	1315.5095	1	5.428	66.7%	1	K.SPASTIQILGAEK.A	2

YJL132W

9.1%

750

84466

6.3

YJL132W SGDID:S000003668, Chr X from 161832-164084, Uncharacterized ORF, "Hypothetical protein"

	Filename	XCorr	DeltCN	Conf%	ObsM+H+	CalcM+H+	SpR	ZScore	Ion%	#	Sequence
*	PARC_hx12_03_itms.11230.11230.2	3.5227	0.23	100.0%	1625.3922	1625.6512	1	6.269	66.7%	2	R.DSNNNENWDFLTR.S	2
*	PARC_hx12_05_itms.10780.10780.2	3.9247	0.4259	100.0%	1507.5122	1507.6866	1	7.684	75.0%	1	R.NQLLTNIYSTSPR.A	2
*	PARC_hx12_04_itms.09960.09960.2	2.1843	0.0314	98.7%	1206.7522	1207.4302	11	3.592	65.0%	1	K.GVINLDGYPMK.I	2
*	PARC_hx12_03_itms.12873.12873.2	2.6817	0.303	100.0%	2130.412	2130.2263	7	5.225	38.9%	1	K.SDSIPDEFGSSLLFNDEEK.K	2
*	PARC_hx12_03_itms.08703.08703.2	2.6558	0.1732	100.0%	1299.4521	1299.4258	7	4.278	63.6%	1	K.LYVSSPGSFDAR.G	2

YHR005C

9.1%

472

54076

7.6

GPA1 SGDID:S000001047, Chr VIII from 114912-113494, reverse complement, Verified ORF, "GTP-binding alpha subunit of the heterotrimeric G protein that couples to pheromone receptors; negatively regulates the mating pathway by sequestering G(beta)gamma and by triggering an adaptive response; activates the pathway via Scp160p"

	Filename	XCorr	DeltCN	Conf%	ObsM+H+	CalcM+H+	SpR	ZScore	Ion%	#	Sequence
*	PARC_hx12_03_itms.09964.09964.2	3.9524	0.3178	100.0%	1487.2922	1487.65	1	6.065	66.7%	2	R.ANDVIEQSLQLEK.Q	2
*	PARC_hx12_03_itms.10163.10163.2	3.314	0.3154	100.0%	1773.4122	1772.9153	1	6.066	64.3%	2	K.FASPNYVCTDEDILK.G	2
*	PARC_hx12_03_itms.09135.09135.2	3.9872	0.3483	100.0%	1585.5322	1585.7081	1	7.19	71.4%	2	K.TTGITETEFNIGSSK.F	2

YCL043C

9.0%

522

58227

4.5

PDI1 SGDID:S000000548, Chr III from 50221-48653, reverse complement, Verified ORF, "Protein disulfide isomerase, multifunctional protein resident in the endoplasmic reticulum lumen, essential for the formation of disulfide bonds in secretory and cell-surface proteins, unscrambles non-native disulfide bonds"

	Filename	XCorr	DeltCN	Conf%	ObsM+H+	CalcM+H+	SpR	ZScore	Ion%	#	Sequence
*	PARC_hx12_05_itms.11747.11747.2	3.6212	0.4203	100.0%	2149.3323	2150.1785	1	9.067	55.9%	1	K.HFNDYDFVSAENADDDFK.L	2
*	PARC_hx12_03_itms.08514.08514.2	3.2905	0.1873	100.0%	1321.4722	1322.4576	1	5.506	68.2%	1	K.KADIADADVFEK.W	2
*	PARC_hx12_05_itms.15418.15418.2	4.8698	0.4451	100.0%	1941.4122	1942.0863	1	9.09	71.9%	6	K.YGLPQLSEEAFDELSDK.I	2

YGL008C

8.9%

918

99619

5.1

PMA1 SGDID:S000002976, Chr VII from 482671-479915, reverse complement, Verified ORF, "Plasma membrane H+-ATPase, pumps protons out of the cell; major regulator of cytoplasmic pH and plasma membrane potential; part of the P2 subgroup of cation-transporting ATPases"

	Filename	XCorr	DeltCN	Conf%	ObsM+H+	CalcM+H+	SpR	ZScore	Ion%	#	Sequence
*	PARC_hx12_04_itms.11355.11355.2	4.0957	0.4279	100.0%	2480.7322	2481.7156	1	7.964	52.4%	3	R.PVPEEYLQTDPSYGLTSDEVLK.R	2
*	PARC_hx12_03_itms.08307.08307.2	2.9333	0.2278	100.0%	1057.6522	1058.2664	1	6.333	88.9%	1	K.TLANTAVVIR.D	2
*	PARC_hx12_03_itms.07464.07464.2	3.829	0.4471	100.0%	1457.8922	1457.5394	1	8.534	87.5%	1	K.HYGDQTFSSSTVK.R	2
	PARC_hx12_03_itms.08213.08213.2	2.7436	0.1965	100.0%	971.4922	971.1447	4	4.688	92.9%	1	R.VVEILQNR.G	2
	PARC_hx12_04_itms.10185.10185.2	4.0133	0.4068	100.0%	1808.4922	1809.0442	1	7.382	58.8%	4	R.GYLVAMTGDGVNDAPSLK.K	2
	PARC_hx12_05_itms.13116.13116.2	4.3504	0.4796	100.0%	1284.7322	1285.4756	1	8.344	80.0%	2	R.SVEDFMAAMQR.V	2

YJR123W

8.9%

225

25039

8.6

RPS5 SGDID:S000003884, Chr X from 651816-652493, Verified ORF, "Protein component of the small (40S) ribosomal subunit, the least basic of the non-acidic ribosomal proteins; phosphorylated in vivo; essential for viability; has similarity to E. coli S7 and rat S5 ribosomal proteins"

	Filename	XCorr	DeltCN	Conf%	ObsM+H+	CalcM+H+	SpR	ZScore	Ion%	#	Sequence
*	PARC_hx12_03_itms.10731.10731.2	3.0137	0.2617	100.0%	1153.4521	1153.2769	1	5.218	81.2%	1	K.WSFEEVEVK.D	2
*	PARC_hx12_03_itms.10270.10270.2	3.4817	0.3568	100.0%	1264.7122	1265.4087	1	6.847	80.0%	1	K.DASLVDYVQVR.Q	2

YLR148W

8.6%

918

107398

7.0

PEP3 SGDID:S000004138, Chr XII from 434642-437398, Verified ORF, "Vacuolar peripheral membrane protein that promotes vesicular docking/fusion reactions in conjunction with SNARE proteins, required for vacuolar biogenesis, forms complex with Pep5p that mediates protein transport to the vacuole"

	Filename	XCorr	DeltCN	Conf%	ObsM+H+	CalcM+H+	SpR	ZScore	Ion%	#	Sequence
*	PARC_hx12_03_itms.12250.12250.2	3.0458	0.25	100.0%	1706.4922	1706.8926	1	4.84	69.2%	4	K.FPLVLPDESEQFER.L	2
*	PARC_hx12_04_itms.11522.11522.2	3.2545	0.2161	100.0%	1320.3121	1320.5284	1	5.431	75.0%	3	K.DYNDLNVILIK.Q	2
*	PARC_hx12_03_itms.07728.07728.2	2.4513	0.0578	99.4%	1003.2522	1003.143	2	2.996	92.9%	1	K.FLESHLEK.L	2
*	PARC_hx12_03_itms.10254.10254.2	4.1992	0.3711	100.0%	1442.3322	1441.6392	1	7.113	77.3%	1	K.LDNETVYQIMSK.Q	2
*	PARC_hx12_03_itms.10673.10673.2	3.6445	0.2078	100.0%	1318.4722	1318.528	30	4.654	80.0%	1	R.NDMILENDIIK.F	2
*	PARC_hx12_03_itms.09017.09017.2	3.9718	0.2165	100.0%	1393.4521	1393.5519	1	5.461	81.8%	1	K.MNEISEDIINSK.N	2
*	PARC_hx12_03_itms.08710.08710.2	2.4712	0.0935	99.6%	1320.8121	1321.4758	1	3.284	70.0%	1	R.VILNSNDYNLR.Q	2

YJL111W

8.4%

550

59736

5.5

CCT7 SGDID:S000003647, Chr X from 207794-209446, Verified ORF, "Subunit of the cytosolic chaperonin Cct ring complex, related to Tcp1p, required for the assembly of actin and tubulins in vivo"

	Filename	XCorr	DeltCN	Conf%	ObsM+H+	CalcM+H+	SpR	ZScore	Ion%	#	Sequence
*	PARC_hx12_05_itms.15023.15023.2	2.6457	0.3723	100.0%	2207.5322	2207.4578	1	6.198	47.6%	1	R.AQDAEVGDGTTSVTILAGELMK.E	2
*	PARC_hx12_04_itms.09040.09040.2	2.6778	0.2873	100.0%	1403.7722	1403.5339	1	5.938	72.7%	1	K.TFSYAGFEQQPK.K	2
*	PARC_hx12_03_itms.09168.09168.2	2.8792	0.1986	100.0%	1258.0922	1258.3739	2	4.476	63.6%	1	R.GGAEQVIAEVER.S	2

YLL015W

8.3%

1559

176873

7.7

BPT1 SGDID:S000003938, Chr XII from 116431-121110, Verified ORF, "ABC type transmembrane transporter of MRP/CFTR family, found in vacuolar membrane, involved in the transport of unconjugated bilirubin and in heavy metal detoxification via glutathione conjugates, along with Ycf1p"

	Filename	XCorr	DeltCN	Conf%	ObsM+H+	CalcM+H+	SpR	ZScore	Ion%	#	Sequence
*	PARC_hx12_04_itms.09972.09972.2	2.8459	0.0188	98.9%	1421.3722	1421.5902	78	2.882	58.3%	1	R.IFIDGLNPETSSK.Y	2
*	PARC_hx12_04_itms.09334.09334.2	2.5092	0.1905	100.0%	1066.3522	1066.2426	2	4.421	66.7%	1	R.GSLASLVYQK.S	2
*	PARC_hx12_03_itms.11303.11303.2	3.2994	0.1961	100.0%	1397.1322	1397.6497	1	4.931	75.0%	1	K.LYAWEEPMMAR.L	2
*	PARC_hx12_05_itms.15363.15363.2	4.8508	0.4336	100.0%	1786.5922	1786.933	1	8.488	75.0%	1	K.SFLLSDEIDDSFIER.I	2
	PARC_hx12_03_itms.07349.07349.1	1.9621	0.0809	99.0%	846.52	846.95905	12	3.287	62.5%	1	K.GISLSGGQK.A	1 1
	PARC_hx12_03_itms.07354.07354.2	1.747	0.029	98.0%	847.1122	846.95905	34	2.99	68.8%	1	K.GISLSGGQK.A	2 2
*	PARC_hx12_05_itms.13030.13030.2	3.1846	0.3574	100.0%	1470.5922	1470.6831	1	7.459	70.8%	1	R.SPMTFFETTPVGR.I	2
*	PARC_hx12_04_itms.09646.09646.2	3.0427	0.1407	99.9%	2116.4922	2117.3264	1	5.094	50.0%	1	R.IVEYCELPPEAQSINPEK.R	2
*	PARC_hx12_03_itms.10006.10006.2	3.651	0.1621	100.0%	1483.3722	1482.6769	2	4.6	70.8%	2	R.ENLDPVLNNINVK.I	2
*	PARC_hx12_04_itms.11373.11373.2	3.4389	0.353	100.0%	1850.4122	1851.076	1	7.91	59.4%	2	K.ILVLDEATASVDMETDK.I	2
*	PARC_hx12_03_itms.08772.08772.2	2.8683	0.1722	100.0%	1100.2922	1100.3036	1	4.76	88.9%	1	K.IIVLDQGSVR.E	2

Similarities: YDR135C(2:9)

U	YDR385W	5	5	8.3%	842	93289	6.3	EFT2 SGDID:S000002793, Chr IV from 1243220-1245748, Verified ORF, "Elongation factor 2 (EF-2), also encoded by EFT1; catalyzes ribosomal translocation during protein synthesis; contains diphthamide, the unique posttranslationally modified histidine residue specifically ADP-ribosylated by diphtheria toxin"
U	YOR133W	5	5	8.3%	842	93289	6.3	EFT1 SGDID:S000005659, Chr XV from 575098-577626, Verified ORF, "Elongation factor 2 (EF-2), also encoded by EFT2; catalyzes ribosomal translocation during protein synthesis; contains diphthamide, the unique posttranslationally modified histidine residue specifically ADP-ribosylated by diphtheria toxin"

Filename	XCorr	DeltCN	Conf%	ObsM+H+	CalcM+H+	SpR	ZScore	Ion%	#	Sequence
PARC_hx12_03_itms.08530.08530.2	2.7972	0.3161	100.0%	1121.2522	1120.248	1	5.192	83.3%	1	K.STLTDSLVQR.A	2
PARC_hx12_05_itms.11580.11580.2	2.5715	0.0926	99.5%	1776.9321	1775.9221	1	3.961	56.7%	1	K.STAISLYSEMSDEDVK.E	2
PARC_hx12_04_itms.07552.07552.2	2.1082	0.1098	99.6%	1073.3722	1073.237	57	3.758	72.2%	1	R.IQGPNYVPGK.K	2
PARC_hx12_04_itms.12430.12430.2	2.4943	0.0266	98.7%	2180.0723	2180.4197	1	3.689	42.1%	1	K.AEPIDEEVSLAIENGIINPR.D	2
PARC_hx12_03_itms.10292.10292.2	2.9932	0.1854	100.0%	1627.8121	1628.7534	1	5.248	65.4%	1	R.IMADDYGWDVTDAR.K	2

YDL185W

8.2%

1071

118637

6.2

TFP1 SGDID:S000002344, Chr IV from 126788-130003, Verified ORF, "Vacuolar ATPase V1 domain subunit A containing the catalytic nucleotide binding sites; protein precursor undergoes self-catalyzed splicing to yield the extein Tfp1p and the intein Vde (PI-SceI), which is a site-specific endonuclease"

	Filename	XCorr	DeltCN	Conf%	ObsM+H+	CalcM+H+	SpR	ZScore	Ion%	#	Sequence
*	PARC_hx12_03_itms.09984.09984.2	2.1318	0.0094	98.0%	1333.2122	1334.515	17	3.345	59.1%	1	K.LSADYPLLTGQR.V	2
*	PARC_hx12_04_itms.08080.08080.2	1.9434	0.2134	99.9%	1447.4321	1447.6	1	4.295	63.6%	1	K.FTCNATHELVVR.T	2
*	PARC_hx12_05_itms.22238.22238.2	3.2537	0.1993	100.0%	2230.3123	2229.5408	1	5.482	50.0%	2	R.NNLNTENPLWDAIVGLGFLK.D	2
*	PARC_hx12_05_itms.12302.12302.2	3.6073	0.2514	100.0%	1535.5322	1535.697	1	5.981	76.9%	2	K.NIPSFLSTDNIGTR.E	2
*	PARC_hx12_05_itms.12532.12532.2	2.5739	0.188	100.0%	1767.3922	1766.0216	1	5.762	43.8%	1	R.LGEMPADQGFPAYLGAK.L	2
*	PARC_hx12_05_itms.13576.13576.2	1.9863	0.2104	99.9%	1646.7522	1647.8273	2	4.639	50.0%	1	K.FYDSNYPEFPVLR.D	2

YOL019W

8.2%

551

60901

6.4

YOL019W SGDID:S000005379, Chr XV from 288898-290553, Uncharacterized ORF, "Protein of unknown function; green fluorescent protein (GFP)-fusion protein localizes to the cell periphery and vacuole"

	Filename	XCorr	DeltCN	Conf%	ObsM+H+	CalcM+H+	SpR	ZScore	Ion%	#	Sequence
*	PARC_hx12_04_itms.08506.08506.2	2.645	0.3028	100.0%	2128.172	2129.1602	1	4.891	47.1%	1	K.ASYNYHPDELSDSDSNWK.L	2
*	PARC_hx12_03_itms.09177.09177.2	3.5868	0.4064	100.0%	1589.2722	1588.7087	2	7.402	57.1%	1	R.STSTYSVIESESGLK.N	2
*	PARC_hx12_04_itms.08607.08607.2	2.028	0.0947	99.2%	1341.2922	1341.4661	68	3.965	45.5%	1	R.ATTSLNNPYGFR.-	2

YOR254C

8.0%

663

75345

5.3

SEC63 SGDID:S000005780, Chr XV from 807022-805031, reverse complement, Verified ORF, "Essential subunit of Sec63 complex (Sec63p, Sec62p, Sec66p and Sec72p); with Sec61 complex, Kar2p/BiP and Lhs1p forms a channel competent for SRP-dependent and post-translational SRP-independent protein targeting and import into the ER"

	Filename	XCorr	DeltCN	Conf%	ObsM+H+	CalcM+H+	SpR	ZScore	Ion%	#	Sequence
*	PARC_hx12_04_itms.09503.09503.2	3.4006	0.2528	100.0%	1428.6322	1428.6404	1	6.21	72.7%	2	K.SVMEETYVQITK.A	2
*	PARC_hx12_03_itms.10028.10028.2	2.7052	0.0605	99.4%	1298.1322	1296.4198	28	3.864	60.0%	1	K.AYESLTDELVR.Q	2
*	PARC_hx12_04_itms.07372.07372.2	2.7657	0.255	100.0%	1009.1122	1009.15326	9	5.189	85.7%	1	K.LLQDHINR.R	2
*	PARC_hx12_04_itms.09750.09750.2	1.8393	0.074	98.9%	1168.3922	1168.4624	124	2.998	61.1%	1	K.ILQTPIIIEK.L	2
*	PARC_hx12_05_itms.14471.14471.2	4.244	0.2073	100.0%	1450.7122	1451.6189	1	6.672	81.8%	1	K.FDINDWEIGTIK.I	2

YMR214W

8.0%

377

41543

7.4

SCJ1 SGDID:S000004827, Chr XIII from 695349-696482, Verified ORF, "One of several homologs of bacterial chaperone DnaJ, located in the ER lumen where it cooperates with Kar2p to mediate maturation of proteins"

	Filename	XCorr	DeltCN	Conf%	ObsM+H+	CalcM+H+	SpR	ZScore	Ion%	#	Sequence
*	PARC_hx12_04_itms.11688.11688.2	3.977	0.3762	100.0%	1811.2922	1811.983	1	7.247	73.3%	2	K.FIEVGEAYDVLSDPEK.K	2
*	PARC_hx12_05_itms.14690.14690.2	1.9129	0.1645	99.7%	1522.6122	1523.6825	139	4.405	42.3%	1	K.GPDFDAGDLVIEFK.E	2

contaminant_KERATIN04

7.9%

458

49644

4.9

no description

Filename	XCorr	DeltCN	Conf%	ObsM+H+	CalcM+H+	SpR	ZScore	Ion%	#	Sequence
PARC_hx12_03_itms.07559.07559.2	3.9442	0.3703	100.0%	1301.7522	1302.4241	1	7.353	81.8%	3	R.ALEEANADLEVK.I	2 2 2 2
PARC_hx12_03_itms.08889.08889.2	4.1035	0.3647	100.0%	1358.5922	1358.4972	1	6.333	86.4%	3	L.RQSVEADINGLR.R	2 2
PARC_hx12_03_itms.08444.08444.2	3.0924	0.1829	100.0%	1201.7922	1202.3097	1	5.29	90.0%	2	R.QSVEADINGLR.R	2 2
PARC_hx12_03_itms.08332.08332.2	1.7507	0.0186	97.7%	1358.2722	1358.4972	372	3.139	54.5%	1	R.QSVEADINGLRR.V	2 2
PARC_hx12_05_itms.09944.09944.2	3.9447	0.1781	100.0%	1380.2122	1380.5437	1	6.536	80.0%	14	K.TRLEQEIATYR.S	2 2 2 2 2

YER123W

7.8%

524

60261

8.8

YCK3 SGDID:S000000925, Chr V from 404809-406383, Verified ORF, "Palmitoylated, vacuolar membrane-localized casein kinase I isoform; negatively regulates vacuole fusion during hypertonic stress via phosphorylation of the HOPS complex subunit, Vps41p; shares overlapping essential functions with Hrr25p"

	Filename	XCorr	DeltCN	Conf%	ObsM+H+	CalcM+H+	SpR	ZScore	Ion%	#	Sequence
*	PARC_hx12_03_itms.09758.09758.2	4.6739	0.3902	100.0%	1488.2722	1488.7394	1	7.283	73.1%	2	R.DSSIIMANEPVAIK.F	2
*	PARC_hx12_03_itms.06826.06826.2	2.2692	0.143	99.8%	923.97217	924.0042	6	4.046	92.9%	1	R.HSDAPQLR.D	2
*	PARC_hx12_05_itms.26936.26936.2	4.3462	0.3995	100.0%	2307.612	2307.4902	1	7.872	58.3%	3	K.FDEDPDYDYLISLMDDALR.L	2

YCR012W

7.7%

416

44738

7.6

PGK1 SGDID:S000000605, Chr III from 137743-138993, Verified ORF, "3-phosphoglycerate kinase, catalyzes transfer of high-energy phosphoryl groups from the acyl phosphate of 1,3-bisphosphoglycerate to ADP to produce ATP; key enzyme in glycolysis and gluconeogenesis"

	Filename	XCorr	DeltCN	Conf%	ObsM+H+	CalcM+H+	SpR	ZScore	Ion%	#	Sequence
*	PARC_hx12_03_itms.12123.12123.2	2.4973	0.0703	99.2%	1965.4521	1964.1456	2	3.959	47.1%	1	K.DVTFLNDCVGPEVEAAVK.A	2
*	PARC_hx12_03_itms.10725.10725.2	3.1077	0.2629	100.0%	1580.8322	1580.7319	1	5.427	57.7%	1	K.VLENTEIGDSIFDK.A	2

YIL047C

7.5%

902

104217

8.7

SYG1 SGDID:S000001309, Chr IX from 267822-265114, reverse complement, Verified ORF, "Plasma membrane protein of unknown function; truncation and overexpression suppresses lethality of G-alpha protein deficiency"

	Filename	XCorr	DeltCN	Conf%	ObsM+H+	CalcM+H+	SpR	ZScore	Ion%	#	Sequence
*	PARC_hx12_03_itms.07384.07384.2	4.6849	0.4573	100.0%	1294.4521	1294.4532	1	8.973	90.9%	1	K.HADANVQLVAQK.M	2
*	PARC_hx12_03_itms.08022.08022.2	5.8563	0.5251	100.0%	2176.8123	2178.379	1	8.995	63.2%	1	K.MQQITSSQPTPTSELSSAQR.D	2
*	PARC_hx12_03_itms.11586.11586.2	4.0918	0.3678	100.0%	2737.612	2736.9644	1	7.701	38.5%	2	R.VTGDAPLPYPIAQVGDDSMDSSDLGSK.A	2
*	PARC_hx12_04_itms.08537.08537.2	2.0784	0.0683	99.1%	1038.9922	1039.1332	1	3.835	87.5%	1	R.SSVFENISR.S	2

YNL321W

7.5%

908

102499

7.1

YNL321W SGDID:S000005265, Chr XIV from 34695-37421, Uncharacterized ORF, "Protein of unknown function, potential Cdc28p substrate"

	Filename	XCorr	DeltCN	Conf%	ObsM+H+	CalcM+H+	SpR	ZScore	Ion%	#	Sequence
*	PARC_hx12_04_itms.07647.07647.2	4.5367	0.3981	100.0%	1867.5122	1868.0972	1	7.146	65.6%	3	R.LKEEVLTPTTSASTPHR.I	2
*	PARC_hx12_05_itms.11062.11062.2	2.0748	0.0577	98.8%	1905.3722	1905.0715	229	3.425	30.0%	1	R.IFSVDDDPKEIQNDIR.Y	2
*	PARC_hx12_04_itms.07578.07578.2	3.576	0.3221	100.0%	1639.7122	1638.7747	1	7.525	66.7%	2	K.SHSVPDLNTATPSSPK.R	2
*	PARC_hx12_05_itms.08405.08405.2	2.3267	0.1268	99.8%	1058.6522	1058.2253	1	5.021	81.2%	1	R.LVFHQSQAK.F	2
*	PARC_hx12_05_itms.08870.08870.2	2.4675	0.1999	100.0%	1203.3722	1202.3184	5	4.299	66.7%	2	R.DCTFSHPPLK.F	2

YDR119W

7.3%

768

85683

8.3

YDR119W SGDID:S000002526, Chr IV from 688222-690528, Uncharacterized ORF, "Hypothetical protein"

	Filename	XCorr	DeltCN	Conf%	ObsM+H+	CalcM+H+	SpR	ZScore	Ion%	#	Sequence
*	PARC_hx12_03_itms.09302.09302.2	4.9728	0.333	100.0%	1741.4321	1741.9359	1	7.74	73.3%	2	K.IEEINENSPLLSAPSK.Q	2
*	PARC_hx12_03_itms.09110.09110.3	2.9113	0.1516	100.0%	2729.9343	2731.0317	12	3.364	25.0%	1	K.QEEVSIPKAVDIDTIDAQPLHEGPK.I	3
*	PARC_hx12_05_itms.10226.10226.2	4.9755	0.3939	100.0%	1819.9722	1820.0093	1	7.582	59.4%	5	K.AVDIDTIDAQPLHEGPK.I	2
*	PARC_hx12_03_itms.07599.07599.2	4.7952	0.5474	100.0%	1681.8121	1681.7588	1	9.615	78.6%	1	K.HATESSDWVHESAPK.F	2

U	YHR203C	2	2	7.3%	261	29410	10.1	RPS4B SGDID:S000001246, Chr VIII from 505530-505517,505247-504476, reverse complement, Verified ORF, "Protein component of the small (40S) ribosomal subunit; identical to Rps4Bp and has similarity to rat S4 ribosomal protein"
U	YJR145C	2	2	7.3%	261	29410	10.1	RPS4A SGDID:S000003906, Chr X from 702983-702970,702713-701942, reverse complement, Verified ORF, "Protein component of the small (40S) ribosomal subunit; mutation affects 20S pre-rRNA processing; identical to Rps4Bp and has similarity to rat S4 ribosomal protein"

	Filename	XCorr	DeltCN	Conf%	ObsM+H+	CalcM+H+	SpR	ZScore	Ion%	#	Sequence
	PARC_hx12_03_itms.07181.07181.2	2.5939	0.1745	100.0%	923.6322	924.0105	2	4.709	85.7%	1	K.LSGCYAPR.P	2
	PARC_hx12_04_itms.07724.07724.2	1.8146	0.0806	98.9%	1200.3322	1200.3396	30	2.851	60.0%	1	K.GVPYVVTHDGR.T	2

YDR080W

7.2%

992

113412

4.9

VPS41 SGDID:S000002487, Chr IV from 604004-606982, Verified ORF, "Vacuolar membrane protein that is a subunit of the homotypic vacuole fusion and vacuole protein sorting (HOPS) complex; essential for membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of protein transport"

	Filename	XCorr	DeltCN	Conf%	ObsM+H+	CalcM+H+	SpR	ZScore	Ion%	#	Sequence
*	PARC_hx12_05_itms.08560.08560.2	2.3504	0.0594	99.4%	941.59216	941.11847	46	3.785	78.6%	1	K.RPENLLAK.G	2
*	PARC_hx12_05_itms.15119.15119.2	3.8411	0.3632	100.0%	2127.8523	2128.4016	1	6.171	58.8%	2	K.IVDLFNGDEIYNDEVIMK.N	2
*	PARC_hx12_03_itms.10581.10581.2	3.4823	0.3249	100.0%	1744.3922	1743.9109	1	5.875	53.6%	3	K.TTPEYYLISSNDAIR.V	2
*	PARC_hx12_05_itms.16187.16187.2	4.245	0.3233	100.0%	1743.5122	1743.8645	1	7.611	73.1%	4	K.LFSVEDFEEELETR.I	2
*	PARC_hx12_05_itms.14474.14474.2	4.2636	0.3255	100.0%	1818.4321	1819.0369	2	6.309	53.3%	1	R.GMSDDLQIDNLQDIIK.H	2

YFL041W

7.1%

622

70880

5.2

FET5 SGDID:S000001853, Chr VI from 49139-51007, Verified ORF, "Multicopper oxidase, integral membrane protein with similarity to Fet3p; may have a role in iron transport"

	Filename	XCorr	DeltCN	Conf%	ObsM+H+	CalcM+H+	SpR	ZScore	Ion%	#	Sequence
*	PARC_hx12_04_itms.07209.07209.2	2.2167	0.161	99.9%	1030.0521	1030.1283	143	3.978	75.0%	1	R.YGHSLPEAR.A	2
*	PARC_hx12_04_itms.12087.12087.2	4.8062	0.3504	100.0%	1584.5122	1581.7655	1	6.693	83.3%	5	R.ATNDFYLEPLIER.D	2
*	PARC_hx12_03_itms.09131.09131.2	3.7905	0.2693	100.0%	1282.4521	1282.4021	1	6.21	83.3%	1	K.LNENYLDICK.A	2
*	PARC_hx12_03_itms.08798.08798.2	4.2035	0.343	100.0%	1403.1522	1402.5443	1	6.726	81.8%	1	R.EILAENEIEVSR.G	2

YDL180W

7.1%

547

62288

5.5

YDL180W SGDID:S000002339, Chr IV from 135897-137540, Uncharacterized ORF, "Hypothetical protein"

	Filename	XCorr	DeltCN	Conf%	ObsM+H+	CalcM+H+	SpR	ZScore	Ion%	#	Sequence
*	PARC_hx12_05_itms.14925.14925.2	3.7687	0.2237	100.0%	2346.412	2346.6367	1	5.187	45.0%	2	K.LTTLDTGDLSFPIDEEQPILK.K	2
*	PARC_hx12_03_itms.12042.12042.2	3.087	0.2749	100.0%	1916.8121	1918.1077	1	5.093	50.0%	1	L.DTGDLSFPIDEEQPILK.K	2
*	PARC_hx12_05_itms.11597.11597.2	2.1171	0.1124	99.5%	2058.2322	2059.1992	6	4.509	35.3%	1	K.SFGYTWAVPNENTQNTTK.S	2

YGR032W

7.0%

1895

216988

7.0

GSC2 SGDID:S000003264, Chr VII from 548268-553955, Verified ORF, "Catalytic subunit of 1,3-beta-glucan synthase, has similarity to an alternate catalytic subunit, Fks1p (Gsc1p); Rho1p encodes the regulatory subunit; involved in cell wall synthesis and maintenance"

	Filename	XCorr	DeltCN	Conf%	ObsM+H+	CalcM+H+	SpR	ZScore	Ion%	#	Sequence
	PARC_hx12_05_itms.10708.10708.2	2.8161	0.2452	100.0%	1345.7722	1346.4949	1	5.743	75.0%	2	F.LLCWGEANQVR.F	2 2
	PARC_hx12_03_itms.08781.08781.2	2.4851	0.1435	99.9%	1135.5122	1135.3612	1	4.343	83.3%	1	K.ILATTDMEIK.Y	2 2
	PARC_hx12_05_itms.13544.13544.1	1.4794	0.0889	99.2%	978.44	979.2047	186	3.183	57.1%	1	R.VTLLEYLK.Q	1 1
*	PARC_hx12_05_itms.13550.13550.2	3.8506	0.4539	100.0%	2074.892	2076.2886	1	8.35	55.6%	1	R.VENPEIVQMFGGNADGLER.E	2
	PARC_hx12_03_itms.09074.09074.2	4.0442	0.4512	100.0%	1297.7322	1298.4819	2	7.42	75.0%	3	R.VQLSGNPILGDGK.S	2 2
	PARC_hx12_05_itms.14268.14268.2	4.7561	0.441	100.0%	2428.632	2429.6086	1	8.161	57.9%	1	R.GEYIQLIDANQDNYLEECLK.I	2 2
	PARC_hx12_03_itms.11446.11446.2	5.2925	0.5162	100.0%	1856.5322	1857.027	1	9.973	73.5%	3	R.EYIFSENSGVLGDVAAGK.E	2 2
	PARC_hx12_04_itms.10460.10460.2	2.6702	0.3817	100.0%	1170.0122	1170.3103	1	5.76	77.8%	5	K.EQTFGTLFAR.T	2 2
	PARC_hx12_03_itms.08697.08697.2	3.6963	0.327	100.0%	1249.6921	1250.4736	1	7.224	77.3%	2	K.IGAGMGEQMLSR.E	2 2
	PARC_hx12_04_itms.08386.08386.2	3.3823	0.4213	100.0%	1362.4922	1362.4441	1	6.706	72.7%	1	K.NDHANTAFWTGK.W	2 2

Similarities: YLR342W(9:1)

YIL005W

7.0%

701

81219

7.8

EPS1 SGDID:S000001267, Chr IX from 345689-347794, Verified ORF, "Pdi1p (protein disulfide isomerase)-related protein involved in endoplasmic reticulum retention of resident ER proteins"

	Filename	XCorr	DeltCN	Conf%	ObsM+H+	CalcM+H+	SpR	ZScore	Ion%	#	Sequence
*	PARC_hx12_05_itms.14615.14615.2	3.6024	0.246	100.0%	2035.5322	2036.2202	1	6.545	52.9%	1	K.DGDPISYVFPGYSTTEMR.N	2
*	PARC_hx12_03_itms.10067.10067.2	3.1039	0.3515	100.0%	1666.3522	1666.8254	1	6.618	57.1%	2	K.YSNPLVTEVDSSNLK.K	2
*	PARC_hx12_04_itms.09528.09528.2	4.1573	0.3282	100.0%	1791.5322	1790.9303	1	7.357	60.0%	1	K.DNFGNSLTSNNPQLLR.E	2

YOR099W

6.9%

393

46022

6.7

KTR1 SGDID:S000005625, Chr XV from 511825-513006, Verified ORF, "Alpha-1,2-mannosyltransferase involved in O- and N-linked protein glycosylation; member of the KRE2/MNT1 mannosyltransferase family"

	Filename	XCorr	DeltCN	Conf%	ObsM+H+	CalcM+H+	SpR	ZScore	Ion%	#	Sequence
*	PARC_hx12_04_itms.11735.11735.2	2.6698	0.3235	100.0%	1711.6522	1710.881	1	5.654	61.5%	2	K.EYEATIPTLWETTR.K	2
*	PARC_hx12_05_itms.13462.13462.2	4.5044	0.4804	100.0%	1567.8322	1568.6825	1	9.167	79.2%	2	R.SPAYSAYFDYLDR.E	2

U	YBR118W	3	8	6.8%	458	50033	9.0	TEF2 SGDID:S000000322, Chr II from 477665-479041, Verified ORF, "Translational elongation factor EF-1 alpha; also encoded by TEF1; functions in the binding reaction of aminoacyl-tRNA (AA-tRNA) to ribosomes"
U	YPR080W	3	8	6.8%	458	50033	9.0	TEF1 SGDID:S000006284, Chr XVI from 700592-701968, Verified ORF, "Translational elongation factor EF-1 alpha; also encoded by TEF2; functions in the binding reaction of aminoacyl-tRNA (AA-tRNA) to ribosomes"

Filename	XCorr	DeltCN	Conf%	ObsM+H+	CalcM+H+	SpR	ZScore	Ion%	#	Sequence
PARC_hx12_04_itms.08122.08122.2	3.1871	0.4335	100.0%	1356.2522	1356.524	1	7.211	77.3%	3	K.YQVTVIDAPGHR.D	2
PARC_hx12_03_itms.08852.08852.2	2.7098	0.2178	100.0%	975.83215	976.1607	1	4.387	92.9%	2	R.LPLQDVYK.I	2
PARC_hx12_04_itms.08289.08289.2	3.455	0.2399	100.0%	1026.2922	1026.2241	2	5.517	85.0%	3	K.IGGIGTVPVGR.V	2

YLR180W

6.8%

382

41818

5.2

SAM1 SGDID:S000004170, Chr XII from 515264-516412, Verified ORF, "S-adenosylmethionine synthetase, catalyzes transfer of the adenosyl group of ATP to the sulfur atom of methionine; one of two differentially regulated isozymes (Sam1p and Sam2p)"

	Filename	XCorr	DeltCN	Conf%	ObsM+H+	CalcM+H+	SpR	ZScore	Ion%	#	Sequence
	PARC_hx12_05_itms.10433.10433.2	3.4175	0.312	100.0%	1444.9122	1445.6182	3	6.28	64.3%	2	R.FVIGGPQGDAGLTGR.K	2
*	PARC_hx12_03_itms.11452.11452.2	4.0331	0.2446	100.0%	1262.3922	1262.3997	1	4.67	85.0%	1	K.SDEEIIDIISK.N	2

YNR013C

6.7%

894

99490

8.0

PHO91 SGDID:S000005296, Chr XIV from 651714-649030, reverse complement, Verified ORF, "Low-affinity phosphate transporter; deletion of pho84, pho87, pho89, pho90, and pho91 causes synthetic lethality; transcription independent of Pi and Pho4p activity; overexpression results in vigorous growth"

	Filename	XCorr	DeltCN	Conf%	ObsM+H+	CalcM+H+	SpR	ZScore	Ion%	#	Sequence
*	PARC_hx12_03_itms.08301.08301.1	1.7192	0.0439	99.2%	985.41	986.1558	35	3.348	64.3%	1	K.YLAYSQLK.K	1
*	PARC_hx12_03_itms.08320.08320.2	2.5807	0.1072	99.8%	985.9522	986.1558	144	4.235	71.4%	1	K.YLAYSQLK.K	2
*	PARC_hx12_03_itms.09083.09083.1	2.4841	0.1128	100.0%	1132.61	1133.3329	1	3.915	72.2%	1	K.FVAALNQELK.K	1
*	PARC_hx12_04_itms.08960.08960.2	3.2104	0.1586	100.0%	1132.9521	1133.3329	1	4.699	88.9%	3	K.FVAALNQELK.K	2
*	PARC_hx12_03_itms.10587.10587.2	4.4479	0.3929	100.0%	1399.4722	1399.5431	1	7.142	86.4%	2	K.DFIELNQTGFSK.I	2
*	PARC_hx12_04_itms.07931.07931.2	3.5334	0.3576	100.0%	1407.2322	1406.4978	1	7.209	72.7%	2	R.RPSNTFNLDADR.I	2
*	PARC_hx12_03_itms.07740.07740.1	1.9152	0.2997	100.0%	940.43	941.0342	4	5.793	75.0%	1	R.DHVVWER.N	1
*	PARC_hx12_03_itms.07785.07785.2	2.0749	0.2847	100.0%	941.3122	941.0342	1	4.426	83.3%	2	R.DHVVWER.N	2
*	PARC_hx12_03_itms.07293.07293.2	2.8847	0.2323	99.5%	1187.2322	1187.2981	3	5.017	70.0%	1	K.LSSSQLRPNAN.I	2

YHR132C

6.7%

430

49829

5.3

ECM14 SGDID:S000001174, Chr VIII from 369797-368505, reverse complement, Verified ORF, "Putative metalloprotease with similarity to the zinc carboxypeptidase family, required for normal cell wall assembly"

	Filename	XCorr	DeltCN	Conf%	ObsM+H+	CalcM+H+	SpR	ZScore	Ion%	#	Sequence
*	PARC_hx12_05_itms.08254.08254.2	4.3296	0.4313	100.0%	1621.9321	1621.7904	1	7.86	60.7%	1	K.ALHISGNKPESNPEK.K	2
*	PARC_hx12_05_itms.16737.16737.2	4.1394	0.2763	100.0%	1593.9922	1594.8021	1	5.98	69.2%	1	R.DLENLLELSYGLSK.A	2

YFR048W

6.6%

662

75914

7.3

RMD8 SGDID:S000001944, Chr VI from 246133-248121, Verified ORF, "Cytosolic protein required for sporulation"

	Filename	XCorr	DeltCN	Conf%	ObsM+H+	CalcM+H+	SpR	ZScore	Ion%	#	Sequence
*	PARC_hx12_05_itms.14393.14393.2	2.9465	0.2685	100.0%	2179.152	2180.333	2	5.53	39.5%	1	R.FSDISIDNILSDNSDIPSAR.R	2
*	PARC_hx12_03_itms.07540.07540.2	3.3152	0.2754	100.0%	1343.4521	1343.4819	1	5.986	75.0%	1	K.FLQETHEVSPR.L	2
*	PARC_hx12_04_itms.11777.11777.2	3.7191	0.2842	100.0%	1518.3922	1518.6641	1	6.203	75.0%	5	K.TLIDNLIDTSEQR.D	2

YPL206C

6.5%

321

37070

8.7

YPL206C SGDID:S000006127, Chr XVI from 163596-162631, reverse complement, Uncharacterized ORF, "Endoplasmic reticulum protein of unknown function; contains glycerophosphodiester phosphodiesterase motifs but mutation does not detectably affect glycerophosphoinositol or glycerophosphocholine metabolism"

	Filename	XCorr	DeltCN	Conf%	ObsM+H+	CalcM+H+	SpR	ZScore	Ion%	#	Sequence
*	PARC_hx12_04_itms.10562.10562.2	3.2601	0.3152	100.0%	1325.1522	1325.504	2	6.036	75.0%	1	R.YPENTLLAFEK.A	2
*	PARC_hx12_03_itms.07752.07752.2	2.3278	0.1709	99.9%	1190.5122	1188.3256	14	4.476	66.7%	1	R.SLTLNDPHYK.L	2

YNL054W

6.4%

1165

128140

6.0

VAC7 SGDID:S000004999, Chr XIV from 526087-529584, Verified ORF, "Integral vacuolar membrane protein involved in vacuole inheritance and morphology; may function to regulate Fab1p kinase activity"

	Filename	XCorr	DeltCN	Conf%	ObsM+H+	CalcM+H+	SpR	ZScore	Ion%	#	Sequence
*	PARC_hx12_04_itms.06767.06767.2	2.9041	0.251	100.0%	1345.9521	1344.424	1	6.352	61.5%	1	R.SANIHGPSSTSASK.A	2
*	PARC_hx12_03_itms.12194.12194.2	3.4333	0.262	100.0%	1474.0122	1473.6635	1	5.099	75.0%	2	R.EILLGENLLDDTK.A	2
*	PARC_hx12_03_itms.08319.08319.2	3.1234	0.338	100.0%	1301.4722	1301.4447	1	5.802	68.2%	2	K.IFDSNPNGAPLR.R	2
*	PARC_hx12_05_itms.13635.13635.2	3.7343	0.2304	100.0%	1702.5322	1702.9023	1	5.587	62.5%	4	N.NDISGGNIETVLLGTAK.K	2
*	PARC_hx12_05_itms.14043.14043.2	2.8176	0.2505	99.5%	1588.4122	1588.7985	2	5.095	56.7%	1	N.DISGGNIETVLLGTAK.K	2
*	PARC_hx12_04_itms.07541.07541.2	1.8731	0.1331	99.6%	897.4522	896.981	28	4.276	78.6%	1	K.FQGGAFNR.N	2
*	PARC_hx12_05_itms.12632.12632.2	2.479	0.0833	99.6%	1273.0122	1273.4308	4	3.974	77.8%	2	K.YEVPFFNTQK.S	2

YKR093W

6.3%

601

68044

5.4

PTR2 SGDID:S000001801, Chr XI from 615372-617177, Verified ORF, "Integral membrane peptide transporter, mediates transport of di- and tri-peptides; conserved protein that contains 12 transmembrane domains; PTR2 expression is regulated by the N-end rule pathway via repression by Cup9p"

	Filename	XCorr	DeltCN	Conf%	ObsM+H+	CalcM+H+	SpR	ZScore	Ion%	#	Sequence
*	PARC_hx12_03_itms.11338.11338.2	2.9668	0.3491	100.0%	2814.2122	2814.9478	3	6.011	30.4%	1	R.YNLSPSPEDEDFEGPTEEEMQTLR.H	2
*	PARC_hx12_03_itms.12500.12500.2	3.3732	0.2146	100.0%	1630.7122	1630.8536	2	4.7	53.8%	1	K.ANDIEILEPMESLR.S	2

YMR243C

6.3%

442

48345

6.4

ZRC1 SGDID:S000004856, Chr XIII from 756165-754837, reverse complement, Verified ORF, "Vacuolar membrane zinc transporter, transports zinc from the cytosol into the vacuole for storage; also has a role in resistance to zinc shock resulting from a sudden influx of zinc into the cytoplasm"

	Filename	XCorr	DeltCN	Conf%	ObsM+H+	CalcM+H+	SpR	ZScore	Ion%	#	Sequence
*	PARC_hx12_03_itms.08037.08037.2	2.902	0.1346	99.9%	1337.1522	1337.5187	2	4.598	75.0%	1	R.LIEPQEIQNPR.L	2
*	PARC_hx12_05_itms.10922.10922.2	4.8214	0.46	100.0%	1858.6921	1856.1295	1	7.87	71.9%	7	R.ILLQATPSTISADQIQR.E	2

YER138C

6.1%

1755

198561

8.1

YER138C SGDID:S000000940, Chr V from 449020-447719,447717-443752, reverse complement, transposable_element_gene, "TyB Gag-Pol protein; proteolytically processed to make the Gag, RT, PR, and IN proteins that are required for retrotransposition"

Filename	XCorr	DeltCN	Conf%	ObsM+H+	CalcM+H+	SpR	ZScore	Ion%	#	Sequence
PARC_hx12_04_itms.12098.12098.2	3.7324	0.2985	100.0%	1415.3322	1413.6257	1	6.085	86.4%	3	K.DILSVDYTDIMK.I	2
PARC_hx12_05_itms.08348.08348.2	3.9047	0.1089	100.0%	1251.5922	1251.3878	25	5.07	75.0%	1	R.LNNNGIHINNK.V	2
PARC_hx12_04_itms.08207.08207.2	3.0132	0.2588	100.0%	991.0122	991.203	1	6.26	92.9%	1	K.VACQLIMR.G	2
PARC_hx12_05_itms.13004.13004.2	3.3515	0.4255	100.0%	1695.2722	1694.8352	1	7.258	64.3%	2	K.SAPSYFISFTDETTK.F	2
PARC_hx12_04_itms.08958.08958.2	2.9219	0.152	99.9%	1452.5521	1452.6476	5	4.596	58.3%	1	K.TVDTTNYVILQGK.E	2
PARC_hx12_04_itms.12290.12290.2	4.6252	0.3453	100.0%	2092.7122	2090.2102	1	8.45	78.1%	5	R.LDQFNYDALTFDEDLNR.L	2
PARC_hx12_03_itms.08993.08993.2	2.6557	0.0584	99.2%	1642.2322	1642.8033	16	4.019	46.4%	1	R.EVDPNISESNILPSK.K	2
PARC_hx12_03_itms.09152.09152.2	4.4301	0.459	100.0%	1788.5521	1789.9824	1	8.495	70.0%	1	K.LVAISDASYGNQPYYK.S	2

YBR038W

6.1%

963

109882

8.6

CHS2 SGDID:S000000242, Chr II from 311897-314788, Verified ORF, "Chitin synthase II, requires activation from zymogenic form in order to catalyze the transfer of N-acetylglucosamine (GlcNAc) to chitin; required for the synthesis of chitin in the primary septum during cytokinesis"

	Filename	XCorr	DeltCN	Conf%	ObsM+H+	CalcM+H+	SpR	ZScore	Ion%	#	Sequence
*	PARC_hx12_03_itms.10534.10534.2	3.6193	0.4455	100.0%	1588.3722	1587.6924	1	7.767	66.7%	2	R.YTACTVEPDDFLR.E	2
*	PARC_hx12_04_itms.09447.09447.2	4.8251	0.4338	100.0%	1623.4521	1623.8212	1	7.214	63.3%	1	K.VFDMDSNVAGAAGQIK.T	2
*	PARC_hx12_03_itms.08717.08717.2	3.2072	0.3025	100.0%	1286.8322	1287.3715	1	6.5	80.0%	1	R.SYFLGETQEGR.D	2
*	PARC_hx12_03_itms.12165.12165.2	4.4988	0.3475	100.0%	2112.5122	2110.1956	1	7.746	63.9%	3	K.EATGETDVPEDVSEFISQR.R	2

YDL001W

6.0%

430

49932

5.7

RMD1 SGDID:S000002159, Chr IV from 447981-449273, Verified ORF, "Cytoplasmic protein required for sporulation"

	Filename	XCorr	DeltCN	Conf%	ObsM+H+	CalcM+H+	SpR	ZScore	Ion%	#	Sequence
*	PARC_hx12_04_itms.11464.11464.2	3.1734	0.239	100.0%	2091.5322	2091.2788	1	6.09	62.5%	1	K.LAEEDIQVEEFNYYVTK.S	2
*	PARC_hx12_04_itms.10685.10685.2	2.7708	0.2101	100.0%	1155.2522	1155.3391	3	4.964	93.8%	1	R.IYNDFITLR.D	2

YAL042W

6.0%

415

46235

6.8

ERV46 SGDID:S000000040, Chr I from 61317-62564, Verified ORF, "Protein localized to COPII-coated vesicles, forms a complex with Erv41p; involved in the membrane fusion stage of transport"

	Filename	XCorr	DeltCN	Conf%	ObsM+H+	CalcM+H+	SpR	ZScore	Ion%	#	Sequence
*	PARC_hx12_05_itms.13649.13649.2	3.556	0.2452	100.0%	1166.2922	1166.3599	1	5.409	85.0%	1	R.STLLSLDAFAK.T	2
*	PARC_hx12_04_itms.07786.07786.2	4.0988	0.4813	100.0%	1336.8121	1337.4783	1	8.878	69.2%	3	R.HGGAVVATSPLDGR.Q	2

YDL143W

5.9%

528

57604

7.9

CCT4 SGDID:S000002302, Chr IV from 199997-201583, Verified ORF, "Subunit of the cytosolic chaperonin Cct ring complex, related to Tcp1p, required for the assembly of actin and tubulins in vivo"

	Filename	XCorr	DeltCN	Conf%	ObsM+H+	CalcM+H+	SpR	ZScore	Ion%	#	Sequence
*	PARC_hx12_03_itms.10258.10258.2	4.2842	0.4274	100.0%	1635.1522	1635.7222	1	6.955	60.0%	1	R.LGSADLVEEIDSDGSK.I	2
*	PARC_hx12_04_itms.09663.09663.2	3.4386	0.3675	100.0%	1440.3922	1440.6395	5	6.087	53.6%	2	R.GLIAGGGAPEIEISR.R	2

YGL055W

5.7%

510

58403

9.0

OLE1 SGDID:S000003023, Chr VII from 398631-400163, Verified ORF, "Fatty acid desaturase, required for monounsaturated fatty acid synthesis and for normal distribution of mitochondria"

	Filename	XCorr	DeltCN	Conf%	ObsM+H+	CalcM+H+	SpR	ZScore	Ion%	#	Sequence
*	PARC_hx12_05_itms.12629.12629.2	3.5094	0.173	100.0%	1877.3922	1877.0612	1	4.915	60.0%	2	K.FSQNAIEEALIQQEQK.K	2
*	PARC_hx12_05_itms.09840.09840.2	3.7387	0.3243	100.0%	1427.4521	1427.5779	1	7.121	70.8%	1	R.HSNAAQNVLADMR.V	2

YDR483W

5.7%

442

51387

5.4

KRE2 SGDID:S000002891, Chr IV from 1421147-1422475, Verified ORF, "Alpha1,2-mannosyltransferase of the Golgi involved in protein mannosylation"

	Filename	XCorr	DeltCN	Conf%	ObsM+H+	CalcM+H+	SpR	ZScore	Ion%	#	Sequence
*	PARC_hx12_04_itms.09695.09695.2	3.9507	0.3027	100.0%	1489.5122	1489.6832	1	7.404	79.2%	2	K.TTMDYITPSFANK.A	2
*	PARC_hx12_05_itms.09262.09262.2	2.6409	0.3488	100.0%	1412.0721	1411.5975	1	6.152	77.3%	2	K.EYYDAQGLVKPK.N	2

YGL006W

5.6%

1173

130861

7.4

PMC1 SGDID:S000002974, Chr VII from 485925-489446, Verified ORF, "Vacuolar Ca2+ ATPase involved in depleting cytosol of Ca2+ ions; prevents growth inhibition by activation of calcineurin in the presence of elevated concentrations of calcium"

	Filename	XCorr	DeltCN	Conf%	ObsM+H+	CalcM+H+	SpR	ZScore	Ion%	#	Sequence
*	PARC_hx12_03_itms.07296.07296.2	3.2977	0.1574	100.0%	1139.0922	1139.2535	2	4.941	77.8%	1	K.SQLSDLHNPK.S	2
*	PARC_hx12_05_itms.11871.11871.2	2.6228	0.2587	100.0%	1435.0721	1434.5919	1	5.67	62.5%	2	K.NAGISLPEISNYR.K	2
*	PARC_hx12_05_itms.11356.11356.2	2.708	0.2009	100.0%	1420.8522	1421.652	1	4.915	66.7%	2	K.TGTLTENVMTVVR.G	2
*	PARC_hx12_03_itms.09956.09956.2	3.2988	0.2801	100.0%	1075.3522	1075.2505	1	5.406	88.9%	2	K.TETALLSLAR.L	2
*	PARC_hx12_03_itms.09336.09336.2	4.6311	0.1518	100.0%	1887.9521	1889.0875	1	7.358	60.5%	2	K.GMGDVVAVTGDGTNDAPALK.L	2

YDL199C

5.5%

687

77501

9.0

YDL199C SGDID:S000002358, Chr IV from 103354-101291, reverse complement, Uncharacterized ORF, "Hypothetical protein"

	Filename	XCorr	DeltCN	Conf%	ObsM+H+	CalcM+H+	SpR	ZScore	Ion%	#	Sequence
*	PARC_hx12_05_itms.10606.10606.2	1.9968	0.1059	99.4%	1426.6322	1427.6438	1	3.801	59.1%	1	R.QLLQQAEISQLR.S	2
*	PARC_hx12_05_itms.08252.08252.2	2.7432	0.1903	95.6%	2718.2122	2719.572	2	4.4	30.0%	1	R.LDSDDDSTGNGSGNHDDVFDDTGSEF.S	2

YER125W

5.4%

809

91816

6.7

RSP5 SGDID:S000000927, Chr V from 410185-412614, Verified ORF, "Ubiquitin-protein ligase involved in ubiquitin-mediated protein degradation; plays a role in heat shock element (HSE)-mediated gene expression and multivesicular body sorting; contains a hect (homologous to E6-AP carboxyl terminus) domain"

	Filename	XCorr	DeltCN	Conf%	ObsM+H+	CalcM+H+	SpR	ZScore	Ion%	#	Sequence
*	PARC_hx12_05_itms.14429.14429.2	3.5893	0.3485	100.0%	1753.5122	1752.9617	1	7.374	63.3%	1	R.SPDPFAVLTIDGYQTK.S	2
*	PARC_hx12_04_itms.07469.07469.2	2.1677	0.1548	99.8%	1123.4521	1123.2131	1	4.482	75.0%	1	R.AYFVDHNTR.T	2
*	PARC_hx12_04_itms.07680.07680.2	2.1098	0.303	100.0%	1122.6122	1123.2535	2	5.242	81.2%	1	R.VYFVDHNTK.T	2
*	PARC_hx12_05_itms.09959.09959.2	2.5146	0.1379	99.8%	1123.8922	1124.2822	2	4.874	72.2%	1	R.LLQFTTGTSR.I	2

YER072W

5.4%

129

14371

10.5

VTC1 SGDID:S000000874, Chr V from 302804-303193, Verified ORF, "Vacuolar transporter chaperon (VTC) involved in distributing V-ATPase and other membrane proteins; together with other VTC proteins, forms a heterotetrameric complex that associates with the SNARE Nyv1p and the V0 sector of the V-ATPase"

	Filename	XCorr	DeltCN	Conf%	ObsM+H+	CalcM+H+	SpR	ZScore	Ion%	#	Sequence
*	PARC_hx12_03_itms.08376.08376.1	1.7337	0.0258	99.2%	882.59	882.9945	12	3.193	75.0%	1	K.VFFANER.T	1
*	PARC_hx12_03_itms.08385.08385.2	2.2968	0.1481	99.9%	882.7322	882.9945	5	4.51	91.7%	1	K.VFFANER.T	2

YPL045W

5.3%

798

92741

7.1

VPS16 SGDID:S000005966, Chr XVI from 467257-469653, Verified ORF, "Subunit of the homotypic vacuole fusion and vacuole protein sorting (HOPS) complex; part of the Class C Vps complex essential for membrane docking and fusion at both the Golgi-to-endosome and endosome-to-vacuole stages of protein transport"

	Filename	XCorr	DeltCN	Conf%	ObsM+H+	CalcM+H+	SpR	ZScore	Ion%	#	Sequence
*	PARC_hx12_04_itms.11153.11153.2	3.4748	0.3605	100.0%	1622.4521	1622.7747	1	5.883	70.8%	1	K.LNGNEWELLYENK.D	2
*	PARC_hx12_03_itms.11202.11202.2	4.1126	0.276	100.0%	1751.5122	1750.9434	1	5.535	67.9%	1	R.IEQLYNLDDDSIALK.E	2
*	PARC_hx12_03_itms.10768.10768.2	2.6286	0.0857	99.5%	1671.2722	1669.9152	7	3.596	46.2%	1	K.EIYNIIPPNEPELK.A	2

Reverse_YFL047W

5.3%

714

82209

5.8

RGD2 SGDID:S000001847, Chr VI from 40421-42565, Verified ORF, "GTPase-activating protein (RhoGAP) for Cdc42p and Rho5p"

	Filename	XCorr	DeltCN	Conf%	ObsM+H+	CalcM+H+	SpR	ZScore	Ion%	#	Sequence
*	PARC_hx12_03_itms.12422.12422.2	2.0517	0.1151	99.5%	1430.3522	1430.6617	13	3.851	50.0%	1	K.MTKYDFDIGAIR.N	2
*	PARC_hx12_03_itms.05661.05661.2	2.1015	0.2546	97.8%	3174.672	3177.6055	272	4.706	18.0%	1	N.QIKLSKMANALEDENFHTRKFEELQR.C	2

YMR171C

5.3%

550

62532

4.8

YMR171C SGDID:S000004781, Chr XIII from 605519-603867, reverse complement, Uncharacterized ORF, "Endosomal protein of unknown function, mRNA is targeted to the bud via the mRNA transport system involving She2p"

	Filename	XCorr	DeltCN	Conf%	ObsM+H+	CalcM+H+	SpR	ZScore	Ion%	#	Sequence
*	PARC_hx12_04_itms.09664.09664.2	2.4142	0.1294	99.8%	1617.0721	1616.8108	1	3.333	54.2%	1	K.LAQLSPEEQFYYK.Q	2
*	PARC_hx12_03_itms.08807.08807.2	2.1289	0.0126	97.9%	1764.3722	1765.8712	42	3.954	40.0%	1	K.IFETDGPLNSDENVSK.G	2

YGR125W

1036

116971

7.4

YGR125W SGDID:S000003357, Chr VII from 742330-745440, Uncharacterized ORF, "Hypothetical protein"

	Filename	XCorr	DeltCN	Conf%	ObsM+H+	CalcM+H+	SpR	ZScore	Ion%	#	Sequence
*	PARC_hx12_05_itms.13601.13601.2	2.1121	0.0536	98.8%	1535.4122	1534.7117	1	3.248	50.0%	1	R.QAGWIFPIANSDSK.W	2
*	PARC_hx12_03_itms.09330.09330.2	6.2805	0.5328	100.0%	1884.2922	1884.9567	1	10.724	78.1%	3	K.NINADNIDYSAAEGFNR.I	2
*	PARC_hx12_04_itms.07623.07623.2	2.9807	0.2092	100.0%	1201.7322	1201.3683	2	4.911	80.0%	1	K.KIDTIGNGLNR.G	2
*	PARC_hx12_05_itms.09671.09671.2	2.5688	0.1376	99.8%	1478.0521	1476.6726	18	4.079	63.6%	1	K.QYRPDIISEVQK.V	2

YLR396C

691

79271

5.3

VPS33 SGDID:S000004388, Chr XII from 912310-910235, reverse complement, Verified ORF, "ATP-binding protein that is a subunit of the homotypic vacuole fusion and vacuole protein sorting (HOPS) complex; essential for membrane docking and fusion at both the Golgi-to-endosome and endosome-to-vacuole stages of protein transport"

	Filename	XCorr	DeltCN	Conf%	ObsM+H+	CalcM+H+	SpR	ZScore	Ion%	#	Sequence
*	PARC_hx12_03_itms.09072.09072.2	3.2756	0.288	100.0%	1602.6522	1602.7411	2	5.944	66.7%	1	R.IDEHQTENDLFIK.G	2
*	PARC_hx12_04_itms.09606.09606.2	3.5109	0.2617	100.0%	1380.3322	1379.5126	3	5.815	63.6%	2	K.EFVDSLGSLQQR.Q	2
*	PARC_hx12_03_itms.07745.07745.2	2.5747	0.1978	100.0%	1215.1522	1215.3489	1	5.509	65.0%	1	K.NHTTLSSDVLK.V	2

YLL043W

669

73877

6.9

FPS1 SGDID:S000003966, Chr XII from 49937-51946, Verified ORF, "Plasma membrane glycerol channel, member of the major intrinsic protein (MIP) family of channel proteins; involved in efflux of glycerol and in uptake of the trivalent metalloids arsenite and antimonite"

	Filename	XCorr	DeltCN	Conf%	ObsM+H+	CalcM+H+	SpR	ZScore	Ion%	#	Sequence
*	PARC_hx12_03_itms.07347.07347.2	3.6828	0.3869	100.0%	1662.8121	1663.744	1	6.932	60.7%	1	K.NADDAHTIPESHLSR.R	2
*	PARC_hx12_03_itms.09761.09761.2	4.718	0.3356	100.0%	2356.5522	2356.2878	1	7.267	63.2%	3	R.TSDLSDFSYNNDDDEEFGER.M	2

YGR175C