D parc

DTASelect v2.0.16
/data/6/jamest/xu/aug07/hx2/parc
/scratch/yates/SGD_S-cerevisiae_na_12-16-2005_con_reversed.fasta
SEQUEST 3.0 in SQT format.
--trypstat
Jump to the summary table.

sequest.params modifications:

*	X	0.0
#	X	0.0
@	X	0.0
Static	C	57.0

true	Use criteria
0.0	Minimum peptide confidence
0.05	Peptide false positive rate
0.0	Minimum protein confidence
1.0	Protein false positive rate
1	Minimum charge state
16	Maximum charge state
0.0	Minimum ion proportion
1000	Maximum Sp rank
-1.0	Minimum Sp score
Include	Modified peptide inclusion
Any	Tryptic status requirement
false	Multiple, ambiguous IDs allowed
Ignore	Peptide validation handling
XCorr	Purge duplicate peptides by protein
false	Include only loci with unique peptide
true	Remove subset proteins
Ignore	Locus validation handling
0	Minimum modified peptides per locus
1000	Minimum redundancy for low coverage loci
2	Minimum peptides per locus

Locus Key:

Validation Status

Locus

Sequence Count

Spectrum Count

Sequence Coverage

Length

MolWt

Descriptive Name

Similarity Key:

Locus

# of identical peptides

# of differing peptides

YDR382W

39.1%

110

11050

4.1

RPP2B SGDID:S000002790, Chr IV from 1239482-1239814, Verified ORF, "Ribosomal protein P2 beta, a component of the ribosomal stalk, which is involved in the interaction between translational elongation factors and the ribosome; regulates the accumulation of P1 (Rpp1Ap and Rpp1Bp) in the cytoplasm"

	Filename	XCorr	DeltCN	Conf%	ObsM+H+	CalcM+H+	SpR	ZScore	Ion%	#	Sequence
*	PARC_hx2_02_itms.09173.09173.2	4.1195	0.4069	100.0%	1638.5122	1638.9047	1	7.971	71.9%	1	Y.LLLVQGGNAAPSAADIK.A	2
*	PARC_hx2_02_itms.07740.07740.2	4.1619	0.4154	100.0%	1525.3121	1525.7452	1	7.754	70.0%	1	L.LLVQGGNAAPSAADIK.A	2
*	PARC_hx2_02_itms.07506.07506.2	4.3412	0.3909	100.0%	1432.3322	1431.5425	1	8.174	76.9%	1	K.AVVESVGAEVDEAR.I	2
*	PARC_hx2_02_itms.09456.09456.2	3.5483	0.2124	100.0%	1273.7722	1274.4136	1	5.478	77.3%	1	K.GSLEEIIAEGQK.K	2

contaminant_KERATIN08

22.2%

469

50499

5.0

no description

	Filename	XCorr	DeltCN	Conf%	ObsM+H+	CalcM+H+	SpR	ZScore	Ion%	#	Sequence
	PARC_hx2_02_itms.06531.06531.2	2.5851	0.1968	100.0%	1092.2122	1091.2273	3	4.822	87.5%	1	K.VTMQNLNDR.L	2 2 2
	PARC_hx2_02_itms.07289.07289.2	4.5145	0.3676	100.0%	1304.0322	1302.4241	1	7.3	86.4%	1	R.ALEEANADLEVK.I	2 2 2
	PARC_hx2_02_itms.08921.08921.1	2.4372	0.2464	100.0%	1029.61	1030.2096	21	6.094	62.5%	1	R.VLDELTLAR.T	1 1 1
	PARC_hx2_02_itms.08913.08913.2	3.4834	0.2464	100.0%	1030.1721	1030.2096	1	5.793	93.8%	1	R.VLDELTLAR.T	2 2 2
	PARC_hx2_02_itms.09906.09906.2	3.6048	0.3023	100.0%	1277.5322	1277.4755	1	5.574	75.0%	1	R.TDLEMQIEGLK.E	2
*	PARC_hx2_02_itms.08868.08868.2	3.8583	0.4298	100.0%	2088.652	2089.2415	1	7.082	50.0%	1	R.GQTGGDVNVEMDAAPGVDLSR.I	2
	PARC_hx2_02_itms.07093.07093.2	2.4426	0.2087	99.3%	1221.7722	1221.3068	12	4.589	60.0%	1	K.ASLENSLEETK.G	2 2
	PARC_hx2_02_itms.06929.06929.2	3.5319	0.2493	100.0%	1123.1721	1123.2511	1	5.853	93.8%	1	R.LEQEIATYR.R	2 2 2 2
*	PARC_hx2_02_itms.06957.06957.2	4.0702	0.4217	100.0%	1857.3722	1857.9286	1	7.294	58.8%	1	R.LLEGEDAHLSSQQASGQS.Y	2
*	PARC_hx2_02_itms.07080.07080.2	5.1399	0.4731	100.0%	2350.672	2351.4485	1	9.251	54.8%	1	R.LLEGEDAHLSSQQASGQSYSSR.E	2
*	PARC_hx2_02_itms.07077.07077.3	4.2854	0.3294	100.0%	2351.5444	2351.4485	1	6.598	38.1%	1	R.LLEGEDAHLSSQQASGQSYSSR.E	3

Similarities: contaminant_KERATIN03(1:10)
contaminant_KERATIN05(6:5)
contaminant_KERATIN12(3:8)
contaminant_KERATIN04(2:9)

contaminant_KERATIN13

19.6%

643

65494

6.6

no description

	Filename	XCorr	DeltCN	Conf%	ObsM+H+	CalcM+H+	SpR	ZScore	Ion%	#	Sequence
	PARC_hx2_02_itms.08082.08082.1	2.1583	0.1094	100.0%	827.45	827.95544	10	3.228	75.0%	1	Q.FASFIDK.V	1 1 1 1 1
	PARC_hx2_02_itms.07569.07569.2	4.4513	0.0308	100.0%	1476.5322	1476.6726	3	5.835	81.8%	1	R.FLEQQNQVLQTK.W	2 2
	PARC_hx2_02_itms.07582.07582.1	2.7066	0.0161	100.0%	1476.65	1476.6726	13	3.029	54.5%	1	R.FLEQQNQVLQTK.W	1 1
*	PARC_hx2_02_itms.08343.08343.2	3.5997	0.3022	100.0%	1302.2122	1301.4316	1	5.911	83.3%	3	K.NMQDMVEDYR.N	2
	PARC_hx2_02_itms.05019.05019.2	2.8638	0.1546	100.0%	1153.1122	1153.234	79	4.292	75.0%	3	R.NKYEDEINK.R	2 2 2
*	PARC_hx2_02_itms.07743.07743.2	3.1574	0.2028	100.0%	1422.5521	1422.5809	1	5.24	77.3%	1	K.RTNAENEFVTIK.K	2
*	PARC_hx2_02_itms.07931.07931.1	2.2663	0.0699	100.0%	1265.47	1266.3934	1	3.497	60.0%	1	R.TNAENEFVTIK.K	1
*	PARC_hx2_02_itms.07935.07935.2	3.8324	0.2847	100.0%	1265.8722	1266.3934	1	5.967	85.0%	2	R.TNAENEFVTIK.K	2
*	PARC_hx2_02_itms.07198.07198.2	3.5543	0.3203	100.0%	1394.2922	1394.5675	1	6.24	77.3%	1	R.TNAENEFVTIKK.D	2
*	PARC_hx2_02_itms.06400.06400.2	3.1447	0.3136	100.0%	1341.3121	1341.4607	1	5.946	72.7%	1	K.SKAEAESLYQSK.Y	2
*	PARC_hx2_02_itms.07683.07683.2	3.6485	0.2357	100.0%	1180.2122	1180.303	1	6.46	94.4%	3	K.YEELQITAGR.H	2
	PARC_hx2_02_itms.07524.07524.2	2.7287	0.0671	99.3%	974.0722	974.102	6	3.879	92.9%	1	K.IEISELNR.V	2 2
*	PARC_hx2_02_itms.06519.06519.2	2.0856	0.0318	95.6%	1073.7922	1074.2223	3	3.112	75.0%	1	R.LRSEIDNVK.K	2
*	PARC_hx2_02_itms.08267.08267.3	4.1177	0.3236	100.0%	1717.5844	1717.8333	1	5.439	48.2%	1	K.QISNLQQSISDAEQR.G	3
*	PARC_hx2_02_itms.08266.08266.2	4.8477	0.4432	100.0%	1718.5922	1717.8333	1	8.126	75.0%	6	K.QISNLQQSISDAEQR.G	2
*	PARC_hx2_02_itms.09040.09040.1	3.2671	0.3502	100.0%	1357.58	1358.4912	1	6.533	63.6%	2	K.LNDLEDALQQAK.E	1
*	PARC_hx2_02_itms.09093.09093.2	5.4889	0.2558	100.0%	1359.6522	1358.4912	1	6.641	90.9%	4	K.LNDLEDALQQAK.E	2
*	PARC_hx2_02_itms.06556.06556.2	2.3187	0.129	99.3%	1033.7722	1034.1112	13	3.92	68.8%	1	R.TLLEGEESR.M	2

Similarities: contaminant_KERATIN21(1:17)
contaminant_KERATIN18(1:17)
contaminant_KERATIN22(4:14)
contaminant_KERATIN17(2:16)
contaminant_KERATIN16(1:17)

YMR197C

18.9%

217

24668

6.6

VTI1 SGDID:S000004810, Chr XIII from 659197-658544, reverse complement, Verified ORF, "Protein involved in cis-Golgi membrane traffic; v-SNARE that interacts with two t-SNARES, Sed5p and Pep12p; required for multiple vacuolar sorting pathways"

	Filename	XCorr	DeltCN	Conf%	ObsM+H+	CalcM+H+	SpR	ZScore	Ion%	#	Sequence
*	PARC_hx2_02_itms.07085.07085.2	3.8035	0.3932	100.0%	1455.2922	1455.6108	1	6.201	61.5%	1	K.ASLAEAPSQPLSQR.N	2
*	PARC_hx2_02_itms.09229.09229.2	4.5775	0.4025	100.0%	1694.2722	1693.7673	1	7.337	78.6%	1	R.LFGDLNASNIDDDQR.Q	2
*	PARC_hx2_02_itms.08776.08776.2	2.4107	0.1378	98.0%	1415.3121	1415.5425	1	4.238	59.1%	1	R.QTLFQADSYVDK.S	2

contaminant_KERATIN03

18.7%

593

59519

5.2

no description

	Filename	XCorr	DeltCN	Conf%	ObsM+H+	CalcM+H+	SpR	ZScore	Ion%	#	Sequence
	PARC_hx2_02_itms.06531.06531.2	2.5851	0.1968	100.0%	1092.2122	1091.2273	3	4.822	87.5%	1	K.VTMQNLNDR.L	2 2 2
	PARC_hx2_02_itms.07872.07872.2	3.0152	0.2781	100.0%	1202.5521	1202.3097	1	5.957	70.0%	2	R.QSVEADINGLR.R	2 2
*	PARC_hx2_02_itms.08627.08627.2	2.6098	0.2534	100.0%	1032.2522	1032.2224	3	4.744	87.5%	1	R.VLDELTLTK.A	2
*	PARC_hx2_02_itms.06489.06489.2	3.1101	0.1704	100.0%	1495.1522	1494.6041	8	4.916	54.5%	1	R.SQYEQLAEQNRK.D	2
*	PARC_hx2_02_itms.08670.08670.2	3.1897	0.1686	100.0%	1109.6122	1110.1681	1	5.872	81.2%	1	K.DAEAWFNEK.S	2
*	PARC_hx2_02_itms.09781.09781.2	3.7619	0.3111	100.0%	1997.5721	1998.151	1	6.536	43.8%	2	K.ELTTEIDNNIEQISSYK.S	2
*	PARC_hx2_02_itms.06717.06717.2	1.8977	0.089	95.5%	1003.8522	1004.1313	2	3.247	85.7%	1	K.SEITELRR.N	2
*	PARC_hx2_02_itms.08067.08067.2	4.4192	0.4069	100.0%	1394.4521	1391.4778	1	6.688	87.5%	3	K.QSLEASLAETEGR.Y	2
*	PARC_hx2_02_itms.06813.06813.2	3.845	0.2814	100.0%	1166.2722	1166.2761	1	5.265	93.8%	1	R.LENEIQTYR.S	2
*	PARC_hx2_02_itms.06550.06550.2	3.6055	0.473	100.0%	1262.8722	1263.3066	1	7.401	76.9%	1	R.SLLEGEGSSGGGGR.G	2

Similarities: contaminant_KERATIN08(1:9)
contaminant_KERATIN05(1:9)
contaminant_KERATIN04(1:9)

contaminant_KERATIN05

17.4%

471

51531

5.2

no description

	Filename	XCorr	DeltCN	Conf%	ObsM+H+	CalcM+H+	SpR	ZScore	Ion%	#	Sequence
	PARC_hx2_02_itms.06531.06531.2	2.5851	0.1968	100.0%	1092.2122	1091.2273	3	4.822	87.5%	1	K.VTMQNLNDR.L	2 2 2
	PARC_hx2_02_itms.07289.07289.2	4.5145	0.3676	100.0%	1304.0322	1302.4241	1	7.3	86.4%	1	R.ALEEANADLEVK.I	2 2 2
	PARC_hx2_02_itms.08921.08921.1	2.4372	0.2464	100.0%	1029.61	1030.2096	21	6.094	62.5%	1	R.VLDELTLAR.A	1 1 1
	PARC_hx2_02_itms.08913.08913.2	3.4834	0.2464	100.0%	1030.1721	1030.2096	1	5.793	93.8%	1	R.VLDELTLAR.A	2 2 2
	PARC_hx2_02_itms.08093.08093.2	2.4923	0.0823	98.1%	1242.3522	1243.3367	1	4.449	72.2%	2	K.NHEEEMNALR.G	2 2
	PARC_hx2_02_itms.07093.07093.2	2.4426	0.2087	99.3%	1221.7722	1221.3068	12	4.589	60.0%	1	K.ASLENSLEETK.G	2 2
	PARC_hx2_02_itms.06929.06929.2	3.5319	0.2493	100.0%	1123.1721	1123.2511	1	5.853	93.8%	1	R.LEQEIATYR.R	2 2 2 2
*	PARC_hx2_02_itms.07726.07726.3	4.8061	0.3905	100.0%	2309.3943	2310.396	1	6.564	36.9%	1	R.LLEGEDAHLSSSQFSSGSQSSR.D	3
*	PARC_hx2_02_itms.07732.07732.2	5.2841	0.5184	100.0%	2309.5122	2310.396	1	9.164	47.6%	1	R.LLEGEDAHLSSSQFSSGSQSSR.D	2

Similarities: contaminant_KERATIN08(6:3)
contaminant_KERATIN03(1:8)
contaminant_KERATIN12(4:5)
contaminant_KERATIN04(2:7)

YOR106W

16.6%

283

32498

7.0

VAM3 SGDID:S000005632, Chr XV from 519121-519972, Verified ORF, "Syntaxin-related protein required for vacuolar assembly; functions with Vam7p in vacuolar protein trafficking; member of the syntaxin family of proteins"

	Filename	XCorr	DeltCN	Conf%	ObsM+H+	CalcM+H+	SpR	ZScore	Ion%	#	Sequence
*	PARC_hx2_02_itms.08505.08505.2	3.3105	0.2734	100.0%	1532.2122	1532.7002	17	4.752	58.3%	1	K.IETELIPNCTSVR.D	2
*	PARC_hx2_02_itms.07300.07300.2	2.828	0.0843	99.3%	1367.2922	1366.5602	1	3.936	86.4%	2	K.IESNILIHQNGK.L	2
*	PARC_hx2_02_itms.06543.06543.2	3.1767	0.3326	100.0%	1414.6721	1415.5051	1	5.935	80.0%	1	K.YQSLQQSYNQR.K	2
*	PARC_hx2_02_itms.07738.07738.2	1.9635	0.1884	98.1%	1268.1921	1267.3782	2	4.167	65.0%	1	R.QDPESSYISIK.V	2

contaminant_KERATIN21

16.5%

357

39219

5.2

no description

Filename	XCorr	DeltCN	Conf%	ObsM+H+	CalcM+H+	SpR	ZScore	Ion%	#	Sequence
PARC_hx2_02_itms.05019.05019.2	2.8638	0.1546	100.0%	1153.1122	1153.234	79	4.292	75.0%	3	K.NKYEDEINK.R	2 2 2
PARC_hx2_02_itms.08166.08166.2	3.0268	0.2084	100.0%	1223.2722	1223.3684	3	5.495	70.0%	1	R.TAAENEFVTLK.K	2 2
PARC_hx2_02_itms.06365.06365.2	3.0288	0.3133	100.0%	1107.9922	1108.196	1	5.823	87.5%	1	K.AQYEEIAQR.S	2 2 2 2
PARC_hx2_02_itms.09112.09112.2	3.6306	0.4036	100.0%	1658.9521	1659.7625	1	7.047	67.9%	1	K.QCANLQAAIADAEQR.G	2 2
PARC_hx2_02_itms.09107.09107.3	3.5977	0.2384	100.0%	1659.4744	1659.7625	8	4.808	44.6%	1	K.QCANLQAAIADAEQR.G	3 3
PARC_hx2_02_itms.08469.08469.3	2.4816	0.0647	100.0%	1673.3043	1672.876	151	3.431	30.4%	1	K.DAKNKLEGLEDALQK.A	3 3
PARC_hx2_02_itms.08469.08469.2	3.408	0.2611	100.0%	1115.8722	1116.2566	1	4.573	88.9%	1	K.LEGLEDALQK.A	3 3

contaminant_KERATIN02

16.2%

622

61987

5.2

no description

	Filename	XCorr	DeltCN	Conf%	ObsM+H+	CalcM+H+	SpR	ZScore	Ion%	#	Sequence
*	PARC_hx2_02_itms.06093.06093.2	3.7998	0.391	100.0%	1232.6322	1233.2833	1	8.592	73.3%	1	T.SGGGGGGGLGSGGSIR.S	2
*	PARC_hx2_02_itms.07959.07959.2	4.9762	0.3017	100.0%	1692.4521	1692.7826	1	5.702	63.2%	1	L.GGFGGGAGGGDGGILTANEK.S	2
*	PARC_hx2_02_itms.06094.06094.2	2.181	0.0581	95.9%	1066.0322	1066.1742	6	3.541	87.5%	1	K.STMQELNSR.L	2
*	PARC_hx2_02_itms.07229.07229.1	3.5986	0.3307	100.0%	1588.72	1587.6836	1	5.928	61.5%	2	K.VQALEEANNDLENK.I	1
*	PARC_hx2_02_itms.07234.07234.2	5.913	0.376	100.0%	1590.3522	1587.6836	1	7.198	88.5%	4	K.VQALEEANNDLENK.I	2
*	PARC_hx2_02_itms.09418.09418.2	4.1774	0.2992	100.0%	1609.3322	1606.7289	1	6.268	83.3%	3	K.NYSPYYNTIDDLK.D	2
*	PARC_hx2_02_itms.07380.07380.2	2.3691	0.1294	99.3%	1066.5521	1067.2048	18	5.189	78.6%	1	K.FEMEQNLR.Q	2
*	PARC_hx2_02_itms.07432.07432.2	3.015	0.2654	100.0%	1158.0521	1158.2566	1	6.049	80.0%	1	R.QGVDADINGLR.Q	2
*	PARC_hx2_02_itms.08201.08201.2	2.6717	0.2138	100.0%	1190.8322	1191.385	6	4.66	66.7%	1	R.QVLDNLTMEK.S	2

U	YJL177W	2	2	15.8%	184	20551	10.9	RPL17B SGDID:S000003713, Chr X from 90784-91092,91410-91655, Verified ORF, "Protein component of the large (60S) ribosomal subunit, nearly identical to Rpl17Ap and has similarity to E. coli L22 and rat L17 ribosomal proteins"
U	YKL180W	2	2	15.8%	184	20549	10.9	RPL17A SGDID:S000001663, Chr XI from 109274-109582,109889-110134, Verified ORF, "Protein component of the large (60S) ribosomal subunit, nearly identical to Rpl17Bp and has similarity to E. coli L22 and rat L17 ribosomal proteins; copurifies with the components of the outer kinetochore DASH complex"

	Filename	XCorr	DeltCN	Conf%	ObsM+H+	CalcM+H+	SpR	ZScore	Ion%	#	Sequence
	PARC_hx2_02_itms.08901.08901.2	3.2119	0.2887	100.0%	1460.6322	1461.6146	2	5.84	58.3%	1	R.ETAQAINGWELTK.A	2
	PARC_hx2_02_itms.09479.09479.2	4.8163	0.3753	100.0%	1646.3121	1645.8558	1	6.796	76.7%	1	K.FVQGLLQNAAANAEAK.G	2

YGL212W

15.2%

316

36711

8.4

VAM7 SGDID:S000003180, Chr VII from 91436-92386, Verified ORF, "Component of the vacuole SNARE complex involved in vacuolar morphogenesis; SNAP-25 homolog; functions with a syntaxin homolog Vam3p in vacuolar protein trafficking"

	Filename	XCorr	DeltCN	Conf%	ObsM+H+	CalcM+H+	SpR	ZScore	Ion%	#	Sequence
*	PARC_hx2_02_itms.08818.08818.2	2.6676	0.1309	99.3%	1184.4122	1184.2938	1	4.145	93.8%	1	R.FLNELYNDR.F	2
*	PARC_hx2_02_itms.09538.09538.2	2.8913	0.1625	100.0%	1162.9722	1163.3593	1	5.126	88.9%	1	K.IAQDFLQLSK.P	2
*	PARC_hx2_02_itms.07397.07397.2	4.0916	0.2008	100.0%	1835.4521	1835.9658	2	5.376	55.9%	1	R.LLGVATSDNSSTTEVQGR.T	2
*	PARC_hx2_02_itms.07409.07409.2	4.0412	0.3339	100.0%	1338.3322	1338.463	1	6.697	80.0%	1	R.DQEQELVALHR.I	2

contaminant_KERATIN18

14.9%

562

59822

8.0

no description

	Filename	XCorr	DeltCN	Conf%	ObsM+H+	CalcM+H+	SpR	ZScore	Ion%	#	Sequence
*	PARC_hx2_02_itms.06960.06960.2	2.3962	0.2525	99.3%	1425.9722	1425.4668	14	4.135	46.9%	1	R.GSGGLGGACGGAGFGSR.S	2
	PARC_hx2_02_itms.08082.08082.1	2.1583	0.1094	100.0%	827.45	827.95544	10	3.228	75.0%	1	K.FASFIDK.V	1 1 1 1 1
	PARC_hx2_02_itms.08837.08837.2	2.8864	0.0503	99.3%	1204.0922	1204.3684	1	4.072	83.3%	1	K.WTLLQEQGTK.T	2 2
	PARC_hx2_02_itms.08166.08166.2	3.0268	0.2084	100.0%	1223.2722	1223.3684	3	5.495	70.0%	1	R.TAAENEFVTLK.K	2 2
	PARC_hx2_02_itms.06365.06365.2	3.0288	0.3133	100.0%	1107.9922	1108.196	1	5.823	87.5%	1	K.AQYEEIAQR.S	2 2 2 2
	PARC_hx2_02_itms.09112.09112.2	3.6306	0.4036	100.0%	1658.9521	1659.7625	1	7.047	67.9%	1	K.QCANLQAAIADAEQR.G	2 2
	PARC_hx2_02_itms.09107.09107.3	3.5977	0.2384	100.0%	1659.4744	1659.7625	8	4.808	44.6%	1	K.QCANLQAAIADAEQR.G	3 3
	PARC_hx2_02_itms.08469.08469.3	2.4816	0.0647	100.0%	1673.3043	1672.876	151	3.431	30.4%	1	K.DAKNKLEGLEDALQK.A	3 3
	PARC_hx2_02_itms.08469.08469.2	3.408	0.2611	100.0%	1115.8722	1116.2566	1	4.573	88.9%	1	K.LEGLEDALQK.A	3 3

contaminant_KERATIN12

14.8%

431

47974

5.0

no description

	Filename	XCorr	DeltCN	Conf%	ObsM+H+	CalcM+H+	SpR	ZScore	Ion%	#	Sequence
*	PARC_hx2_02_itms.07428.07428.2	2.1684	0.0962	95.9%	1346.3922	1346.4772	26	3.925	59.1%	1	R.ALEEANTELEVK.I	2
	PARC_hx2_02_itms.08921.08921.1	2.4372	0.2464	100.0%	1029.61	1030.2096	21	6.094	62.5%	1	R.VLDELTLAR.A	1 1 1
	PARC_hx2_02_itms.08913.08913.2	3.4834	0.2464	100.0%	1030.1721	1030.2096	1	5.793	93.8%	1	R.VLDELTLAR.A	2 2 2
*	PARC_hx2_02_itms.09856.09856.2	3.4204	0.2505	100.0%	1304.4722	1304.5011	5	5.14	80.0%	1	R.ADLEMQIENLK.E	2
	PARC_hx2_02_itms.08093.08093.2	2.4923	0.0823	98.1%	1242.3522	1243.3367	1	4.449	72.2%	2	K.NHEEEMNALR.G	2 2
*	PARC_hx2_02_itms.07041.07041.2	3.8299	0.4168	100.0%	1405.5521	1404.4764	1	6.937	70.8%	1	K.ASLEGNLAETENR.Y	2
	PARC_hx2_02_itms.06929.06929.2	3.5319	0.2493	100.0%	1123.1721	1123.2511	1	5.853	93.8%	1	R.LEQEIATYR.R	2 2 2 2

Similarities: contaminant_KERATIN08(3:4)
contaminant_KERATIN05(4:3)
contaminant_KERATIN04(1:6)

U	YNL301C	2	2	14.5%	186	20563	11.7	RPL18B SGDID:S000005245, Chr XIV from 64562-64451,64018-63570, reverse complement, Verified ORF, "Protein component of the large (60S) ribosomal subunit, identical to Rpl18Ap and has similarity to rat L18 ribosomal protein"
U	YOL120C	2	2	14.5%	186	20563	11.7	RPL18A SGDID:S000005480, Chr XV from 94401-94290,93842-93394, reverse complement, Verified ORF, "Protein component of the large (60S) ribosomal subunit, identical to Rpl18Bp and has similarity to rat L18 ribosomal protein; intron of RPL18A pre-mRNA forms stem-loop structures that are a target for Rnt1p cleavage leading to degradation"

	Filename	XCorr	DeltCN	Conf%	ObsM+H+	CalcM+H+	SpR	ZScore	Ion%	#	Sequence
	PARC_hx2_02_itms.07594.07594.2	4.3184	0.422	100.0%	1332.0322	1332.4967	1	8.1	83.3%	1	K.TVVVVGTVTDDAR.I	2
	PARC_hx2_02_itms.09712.09712.2	2.9523	0.1949	100.0%	1503.2722	1503.6617	3	5.564	57.7%	1	K.AGGECITLDQLAVR.A	2

contaminant_KERATIN22

13.5%

645

65865

8.0

no description

	Filename	XCorr	DeltCN	Conf%	ObsM+H+	CalcM+H+	SpR	ZScore	Ion%	#	Sequence
*	PARC_hx2_02_itms.06616.06616.2	3.1835	0.2861	100.0%	1255.1122	1255.3298	1	6.667	73.1%	1	R.GFSSGSAVVSGGSR.R	2
	PARC_hx2_02_itms.08082.08082.1	2.1583	0.1094	100.0%	827.45	827.95544	10	3.228	75.0%	1	K.FASFIDK.V	1 1 1 1 1
	PARC_hx2_02_itms.07569.07569.2	4.4513	0.0308	100.0%	1476.5322	1476.6726	3	5.835	81.8%	1	R.FLEQQNQVLQTK.W	2 2
	PARC_hx2_02_itms.07582.07582.1	2.7066	0.0161	100.0%	1476.65	1476.6726	13	3.029	54.5%	1	R.FLEQQNQVLQTK.W	1 1
	PARC_hx2_02_itms.06365.06365.2	3.0288	0.3133	100.0%	1107.9922	1108.196	1	5.823	87.5%	1	K.AQYEEIAQR.S	2 2 2 2
*	PARC_hx2_02_itms.07974.07974.2	3.719	0.3379	100.0%	1194.0521	1194.33	1	6.921	83.3%	2	K.YEELQVTVGR.H	2
	PARC_hx2_02_itms.07524.07524.2	2.7287	0.0671	99.3%	974.0722	974.102	6	3.879	92.9%	1	K.IEISELNR.V	2 2
*	PARC_hx2_02_itms.09771.09771.2	3.1015	0.1981	100.0%	1745.2922	1746.8407	2	4.866	50.0%	1	K.QCKNVQDAIADAEQR.G	2
*	PARC_hx2_02_itms.09585.09585.2	5.4329	0.2727	100.0%	1371.7722	1372.5181	1	6.122	86.4%	1	K.LNDLEEALQQAK.E	2

contaminant_gi|7463016|pir||S77957

11.2%

269

27961

6.7

lysyl endopeptidase (EC 3.4.21.50) - Lysobacter enzymogenes

	Filename	XCorr	DeltCN	Conf%	ObsM+H+	CalcM+H+	SpR	ZScore	Ion%	#	Sequence
*	PARC_hx2_02_itms.07239.07239.1	2.7782	0.3315	100.0%	1748.7	1749.8718	1	6.846	55.9%	1	S.GGVTEPGSSGSPIYSPEK.R	1
*	PARC_hx2_02_itms.07206.07206.2	4.3635	0.5226	100.0%	1750.2122	1749.8718	1	8.47	64.7%	1	S.GGVTEPGSSGSPIYSPEK.R	2
*	PARC_hx2_02_itms.07213.07213.2	3.4427	0.3722	100.0%	1692.2322	1692.82	1	6.799	59.4%	1	G.GVTEPGSSGSPIYSPEK.R	2
*	PARC_hx2_02_itms.07057.07057.2	3.3192	0.4298	100.0%	1635.8121	1635.768	1	7.232	63.3%	1	G.VTEPGSSGSPIYSPEK.R	2
*	PARC_hx2_02_itms.06753.06753.2	3.6279	0.2767	100.0%	1212.1721	1212.3141	1	6.839	81.8%	1	R.VLGQLHGGPSSC.S	2

U	YBR031W	3	4	11.0%	362	39092	10.6	RPL4A SGDID:S000000235, Chr II from 300166-301254, Verified ORF, "N-terminally acetylated protein component of the large (60S) ribosomal subunit, nearly identical to Rpl4Bp and has similarity to E. coli L4 and rat L4 ribosomal proteins"
U	YDR012W	3	4	11.0%	362	39062	10.6	RPL4B SGDID:S000002419, Chr IV from 471850-472938, Verified ORF, "Protein component of the large (60S) ribosomal subunit, nearly identical to Rpl4Ap and has similarity to E. coli L4 and rat L4 ribosomal proteins"

Filename	XCorr	DeltCN	Conf%	ObsM+H+	CalcM+H+	SpR	ZScore	Ion%	#	Sequence
PARC_hx2_02_itms.09673.09673.2	4.4612	0.4965	100.0%	1474.3722	1474.697	1	8.768	73.1%	2	R.GPLVVYAEDNGIVK.A	2
PARC_hx2_02_itms.07954.07954.2	3.6032	0.3903	100.0%	1507.1322	1507.6403	1	6.947	65.4%	1	K.LDQVWGSETVASSK.V	2
PARC_hx2_02_itms.08446.08446.2	3.549	0.3389	100.0%	1330.7122	1331.5118	1	6.533	77.3%	1	R.IINSSEIQSAIR.P	2

contaminant_KERATIN17

10.5%

590

62461

8.1

no description

	Filename	XCorr	DeltCN	Conf%	ObsM+H+	CalcM+H+	SpR	ZScore	Ion%	#	Sequence
	PARC_hx2_02_itms.08082.08082.1	2.1583	0.1094	100.0%	827.45	827.95544	10	3.228	75.0%	1	K.FASFIDK.V	1 1 1 1 1
	PARC_hx2_02_itms.08837.08837.2	2.8864	0.0503	99.3%	1204.0922	1204.3684	1	4.072	83.3%	1	K.WTLLQEQGTK.T	2 2
	PARC_hx2_02_itms.05019.05019.2	2.8638	0.1546	100.0%	1153.1122	1153.234	79	4.292	75.0%	3	K.NKYEDEINK.R	2 2 2
*	PARC_hx2_02_itms.09219.09219.2	2.776	0.2032	100.0%	1282.9722	1283.4822	2	4.531	70.0%	1	R.TTAENEFVMLK.K	2
*	PARC_hx2_02_itms.08685.08685.2	3.5218	0.4164	100.0%	1702.1721	1702.7875	1	6.715	53.6%	1	K.QCANLQNAIADAEQR.G	2
*	PARC_hx2_02_itms.08686.08686.3	3.5986	0.0748	100.0%	1702.2244	1702.7875	8	4.539	46.4%	1	K.QCANLQNAIADAEQR.G	3
*	PARC_hx2_02_itms.08475.08475.2	3.9472	0.2696	100.0%	1144.2322	1144.3104	1	5.261	88.9%	1	K.LAELEEALQK.A	2

YER136W

8.4%

451

51206

6.0

GDI1 SGDID:S000000938, Chr V from 439612-440967, Verified ORF, "GDP dissociation inhibitor, regulates vesicle traffic in secretory pathways by regulating the dissociation of GDP from the Sec4/Ypt/rab family of GTP binding proteins"

	Filename	XCorr	DeltCN	Conf%	ObsM+H+	CalcM+H+	SpR	ZScore	Ion%	#	Sequence
*	PARC_hx2_02_itms.07302.07302.2	3.9515	0.3378	100.0%	1585.8322	1586.6525	1	5.941	73.1%	1	K.EDDLSTHQGLDLDK.N	2
*	PARC_hx2_02_itms.07471.07471.1	1.8609	0.1244	100.0%	898.67	899.0752	1	3.344	71.4%	1	K.LLGPIEEK.F	1
*	PARC_hx2_02_itms.07995.07995.2	4.4257	0.4224	100.0%	1819.3322	1819.8939	1	8.011	70.0%	3	R.SYDASSHFESMTDDVK.D	2
*	PARC_hx2_02_itms.07992.07992.3	2.5676	0.1895	100.0%	1821.6843	1819.8939	2	4.151	40.0%	1	R.SYDASSHFESMTDDVK.D	3

contaminant_KERATIN04

7.0%

458

49644

4.9

no description

Filename	XCorr	DeltCN	Conf%	ObsM+H+	CalcM+H+	SpR	ZScore	Ion%	#	Sequence
PARC_hx2_02_itms.07289.07289.2	4.5145	0.3676	100.0%	1304.0322	1302.4241	1	7.3	86.4%	1	R.ALEEANADLEVK.I	2 2 2
PARC_hx2_02_itms.07872.07872.2	3.0152	0.2781	100.0%	1202.5521	1202.3097	1	5.957	70.0%	2	R.QSVEADINGLR.R	2 2
PARC_hx2_02_itms.06929.06929.2	3.5319	0.2493	100.0%	1123.1721	1123.2511	1	5.853	93.8%	1	R.LEQEIATYR.S	2 2 2 2

Similarities: contaminant_KERATIN08(2:1)
contaminant_KERATIN03(1:2)
contaminant_KERATIN05(2:1)
contaminant_KERATIN12(1:2)

YAL005C

6.9%

642

69768

5.1

SSA1 SGDID:S000000004, Chr I from 141433-139505, reverse complement, Verified ORF, "ATPase involved in protein folding and nuclear localization signal (NLS)-directed nuclear transport; member of heat shock protein 70 (HSP70) family; forms a chaperone complex with Ydj1p; localized to the nucleus, cytoplasm, and cell wall"

	Filename	XCorr	DeltCN	Conf%	ObsM+H+	CalcM+H+	SpR	ZScore	Ion%	#	Sequence
*	PARC_hx2_02_itms.09744.09744.2	2.5615	0.2918	100.0%	1471.4122	1472.5945	1	5.784	62.5%	1	R.TTPSFVAFTDTER.L	2
	PARC_hx2_02_itms.06816.06816.2	2.6633	0.2136	99.3%	1676.3722	1676.6964	2	4.848	43.3%	1	K.ATAGDTHLGGEDFDNR.L	2 2
	PARC_hx2_02_itms.07211.07211.2	3.3884	0.2531	100.0%	1619.9922	1619.7258	1	5.296	71.4%	1	K.NTISEAGDKLEQADK.D	2 2

Similarities: YLL024C(2:1)

YLL024C

6.9%

639

69470

5.1

SSA2 SGDID:S000003947, Chr XII from 97484-95565, reverse complement, Verified ORF, "ATP binding protein involved in protein folding and vacuolar import of proteins; member of heat shock protein 70 (HSP70) family; associated with the chaperonin-containing T-complex; present in the cytoplasm, vacuolar membrane and cell wall"

	Filename	XCorr	DeltCN	Conf%	ObsM+H+	CalcM+H+	SpR	ZScore	Ion%	#	Sequence
*	PARC_hx2_02_itms.09303.09303.2	2.9493	0.3842	100.0%	1457.8722	1458.5676	1	6.756	70.8%	1	R.TTPSFVGFTDTER.L	2
	PARC_hx2_02_itms.06816.06816.2	2.6633	0.2136	99.3%	1676.3722	1676.6964	2	4.848	43.3%	1	K.ATAGDTHLGGEDFDNR.L	2 2
	PARC_hx2_02_itms.07211.07211.2	3.3884	0.2531	100.0%	1619.9922	1619.7258	1	5.296	71.4%	1	K.NTISEAGDKLEQADK.D	2 2

Similarities: YAL005C(2:1)

YOR270C

6.2%

840

95529

5.5

VPH1 SGDID:S000005796, Chr XV from 830571-828049, reverse complement, Verified ORF, "Subunit of vacuolar-ATPase V0 domain, one of two isoforms (Vph1p and Stv1p); Vph1p is located in V-ATPase complexes of the vacuole while Stv1p is located in V-ATPase complexes of the Golgi and endosomes"

	Filename	XCorr	DeltCN	Conf%	ObsM+H+	CalcM+H+	SpR	ZScore	Ion%	#	Sequence
*	PARC_hx2_02_itms.08827.08827.2	4.8676	0.2726	100.0%	1761.6122	1761.985	1	5.762	75.0%	1	R.LIQMEDATDQIEVQK.N	2
*	PARC_hx2_02_itms.08211.08211.3	2.5064	0.0692	100.0%	2129.7244	2127.4448	17	3.248	26.5%	1	R.GNLFFKTVEIEQPVYDVK.T	3
*	PARC_hx2_02_itms.08211.08211.2	4.4789	0.3122	100.0%	1420.1522	1420.6024	1	5.997	81.8%	1	K.TVEIEQPVYDVK.T	3
*	PARC_hx2_02_itms.09210.09210.2	4.7048	0.5061	100.0%	2069.172	2069.146	1	9.487	58.3%	1	K.IAESLDANLYDVDSSNEGR.S	2

YLR058C

5.8%

469

52219

7.4

SHM2 SGDID:S000004048, Chr XII from 259402-257993, reverse complement, Verified ORF, "Cytosolic serine hydroxymethyltransferase, involved in one-carbon metabolism"

	Filename	XCorr	DeltCN	Conf%	ObsM+H+	CalcM+H+	SpR	ZScore	Ion%	#	Sequence
*	PARC_hx2_02_itms.09790.09790.2	3.3712	0.404	100.0%	1709.9922	1707.8749	1	7.065	71.4%	1	R.VNPETGIIDYDTLEK.N	2
*	PARC_hx2_02_itms.08885.08885.2	3.7815	0.2876	100.0%	1363.2722	1363.4668	1	6.8	81.8%	1	K.VDEGSDVLNTWK.K	2

contaminant_KERATIN16

5.2%

534

57265

6.6

no description

Filename	XCorr	DeltCN	Conf%	ObsM+H+	CalcM+H+	SpR	ZScore	Ion%	#	Sequence
PARC_hx2_02_itms.08082.08082.1	2.1583	0.1094	100.0%	827.45	827.95544	10	3.228	75.0%	1	K.FASFIDK.V	1 1 1 1 1
PARC_hx2_02_itms.07731.07731.2	4.7128	0.2596	100.0%	1477.4722	1477.7007	1	5.926	81.8%	3	Q.FLEQQNKVLETK.W	2
PARC_hx2_02_itms.06365.06365.2	3.0288	0.3133	100.0%	1107.9922	1108.196	1	5.823	87.5%	1	R.AQYEEIAQR.S	2 2 2 2

YML123C

5.1%

587

64382

6.4

PHO84 SGDID:S000004592, Chr XIII from 25801-24038, reverse complement, Verified ORF, "High-affinity inorganic phosphate (Pi) transporter and low-affinity manganese transporter; regulated by Pho4p and Spt7p; mutation confers resistance to arsenate; exit from the ER during maturation requires Pho86p"

	Filename	XCorr	DeltCN	Conf%	ObsM+H+	CalcM+H+	SpR	ZScore	Ion%	#	Sequence
*	PARC_hx2_02_itms.07096.07096.2	4.7514	0.4523	100.0%	1473.0322	1473.5798	1	8.285	76.9%	1	K.LELAAAAQEQDGEK.K	2
*	PARC_hx2_02_itms.06925.06925.2	2.8164	0.2815	100.0%	1756.0721	1756.7802	1	5.975	56.7%	1	K.NNDIESSSPSQLQHEA.-	2

YAL038W

4.8%

500

54545

7.7

CDC19 SGDID:S000000036, Chr I from 71787-73289, Verified ORF, "Pyruvate kinase, functions as a homotetramer in glycolysis to convert phosphoenolpyruvate to pyruvate, the input for aerobic (TCA cycle) or anaerobic (glucose fermentation) respiration"

	Filename	XCorr	DeltCN	Conf%	ObsM+H+	CalcM+H+	SpR	ZScore	Ion%	#	Sequence
*	PARC_hx2_02_itms.08459.08459.2	2.7639	0.166	99.2%	1228.2922	1228.391	1	4.573	75.0%	1	K.TNNPETLVALR.K	2
*	PARC_hx2_02_itms.08477.08477.2	2.8885	0.3593	100.0%	1519.1122	1519.5646	1	7.14	45.8%	1	K.EPVSDWTDDVEAR.I	2

YOR291W

1.9%

1472

166749

6.1

YOR291W SGDID:S000005817, Chr XV from 861172-865590, Uncharacterized ORF, "Hypothetical protein"

	Filename	XCorr	DeltCN	Conf%	ObsM+H+	CalcM+H+	SpR	ZScore	Ion%	#	Sequence
*	PARC_hx2_02_itms.08536.08536.2	3.9273	0.4695	100.0%	1746.7522	1746.9121	1	7.884	60.0%	1	R.LTESEPLVLSSAEQSR.S	2
*	PARC_hx2_02_itms.09815.09815.2	3.0554	0.4797	100.0%	1490.3121	1490.5688	1	7.601	63.6%	1	K.TNNDDVYWSFTK.G	2

	Proteins	Peptide IDs	Spectra
Unfiltered	2823	3553	3958
Filtered	28	117	151
Forward matches	28	117	151
Decoy matches	0	0	0
Forward FP rate	0.0%	0.0%	0.0%

/data/6/jamest/xu/aug07/hx2/parc