DTASelect v2.0.9 /data/1/catclw/Projects/Jonathan/step_1 /scratch/yates/SGD_S-cerevisiae_na_12-16-2005_con_reversed.fasta SEQUEST 3.0 in SQT format. true Use criteria 0.0 Minimum peptide confidence 0.05 Peptide false positive rate 0.0 Minimum protein confidence 1.0 Protein false positive rate 1 Minimum charge state 9 Maximum charge state 0.0 Minimum ion proportion 1000 Maximum Sp rank -1.0 Minimum Sp score Include Modified peptide inclusion Any Tryptic status requirement false Multiple, ambiguous IDs allowed Ignore Peptide validation handling XCorr Purge duplicate peptides by protein false Include only loci with unique peptide true Remove subset proteins Ignore Locus validation handling 0 Minimum modified peptides per locus 1000 Minimum redundancy for low coverage loci 2 Minimum peptides per locus Locus Sequence Count Spectrum Count Sequence Coverage Length MolWt pI Validation Status Descriptive Name Unique FileName XCorr DeltCN Conf% M+H+ CalcM+H+ TotalIntensity SpR ZScore IonProportion Redundancy Sequence YKL089W 64 224 52.8% 549 62473 4.8 U MIF2 SGDID:S000001572, Chr XI from 273038-274687, Verified ORF, "Kinetochore protein with homology to human CENP-C, required for structural integrity of the spindle during anaphase spindle elongation, interacts with histones H2A, H2B, and H4, phosphorylated by Ipl1p" * Mif2_01_itms.12170.12170.3 6.1108 0.3996 100.0 3751.7344 3751.1074 8597.4 1 7.49 28.2 2 R.KTGIDVKQDIPKDEYSMENIDDFFKDDETSLI.S * Mif2_01_itms.12221.12221.3 4.2717 0.2598 97.7 4201.284 4205.5654 9575.5 3 5.138 20.6 1 R.KT*GIDVKQDIPKDEYSMENIDDFFKDDETSLISMR.R * Mif2_01_itms.12160.12160.3 4.5801 0.2756 100.0 4201.284 4205.5654 9700.8 4 4.433 20.6 1 R.KTGIDVKQDIPKDEY*SMENIDDFFKDDETSLISMR.R * Mif2_01_itms.12068.12068.3 5.1649 0.3008 100.0 3523.4944 3521.8281 9313.9 1 5.871 28.4 4 T.GIDVKQDIPKDEYSMENIDDFFKDDETSLI.S * Mif2_01_itms.07616.07616.2 4.0291 0.3459 100.0 2236.0322 2235.4268 8035.2 1 6.631 52.9 4 K.QDIPKDEYSMENIDDFFK.D * Mif2_01_itms.07580.07580.3 5.7945 0.2518 100.0 2238.5645 2235.4268 7682.5 3 6.097 44.1 3 K.QDIPKDEYSMENIDDFFK.D * Mif2_01_itms.08373.08373.3 4.5942 0.2545 100.0 2315.5144 2315.4268 4388.6 1 4.544 38.2 1 K.QDIPKDEYS*MENIDDFFK.D * Mif2_01_itms.11396.11396.3 5.0626 0.3357 100.0 3386.9944 3383.6797 8109.7 1 6.041 29.6 10 K.QDIPKDEYSMENIDDFFKDDETSLISMR.R * Mif2_01_itms.11577.11577.3 4.8113 0.2215 98.4 3545.0044 3543.6797 3820.6 7 5.018 27.8 2 K.QDIPKDEY*S*MENIDDFFKDDETSLISMR.R * Mif2_01_itms.09206.09206.2 5.1799 0.3837 100.0 1655.5521 1653.7572 9595.0 1 7.479 87.5 2 K.DEYSMENIDDFFK.D * Mif2_01_itms.10676.10676.2 3.6293 0.3144 100.0 1734.3121 1733.7572 6223.6 1 5.96 75.0 2 K.DEYS*MENIDDFFK.D * Mif2_01_itms.12160.12160.2 4.519 0.4012 100.0 2801.1921 2802.0103 9700.8 1 7.286 38.6 2 K.DEYSMENIDDFFKDDETSLISMR.R * Mif2_01_itms.12422.12422.3 5.7555 0.4289 100.0 2804.0942 2802.0103 8060.8 1 7.933 36.4 7 K.DEYSMENIDDFFKDDETSLISMR.R * Mif2_01_itms.13080.13080.3 3.712 0.2876 97.8 2882.9043 2882.0103 6873.3 1 5.193 36.4 1 K.DEYS*MENIDDFFKDDETSLISMR.R * Mif2_01_itms.05415.05415.3 4.3505 0.209 95.5 3218.1843 3216.402 6251.7 2 4.17 28.6 2 K.NVLPPFLQSYKS*QDDEVVQSPSGKGDGSR.R * Mif2_01_itms.00926.00926.2 4.4204 0.2688 100.0 1377.2522 1376.4198 8363.0 1 6.72 83.3 4 K.SQDDEVVQSPSGK.G * Mif2_01_itms.00908.00908.2 3.7123 0.3354 100.0 1847.9321 1848.8778 7479.7 1 6.617 52.9 2 K.SQDDEVVQSPSGKGDGSR.R * Mif2_01_itms.07680.07680.3 6.0402 0.3044 100.0 3858.9543 3859.0679 10726.3 1 6.008 27.3 6 R.RSSLLSHQSNFLSPANDFEPIEEEPEQEENDIR.G * Mif2_01_itms.06725.06725.3 6.7309 0.4012 100.0 3700.3743 3702.8804 7867.9 1 7.705 33.1 16 R.SSLLSHQSNFLSPANDFEPIEEEPEQEENDIR.G * Mif2_01_itms.07910.07910.3 6.3584 0.2067 100.0 3784.3442 3782.8804 7611.3 1 6.923 33.1 9 R.SSLLSHQSNFLS*PANDFEPIEEEPEQEENDIR.G * Mif2_01_itms.06819.06819.3 6.1131 0.3433 100.0 3875.3342 3874.0361 9358.7 1 5.933 24.2 1 R.SSLLSHQSNFLSPANDFEPIEEEPEQEENDIRGN.D * Mif2_01_itms.08500.08500.3 5.4184 0.3007 100.0 4876.6143 4876.1714 9352.9 1 6.764 19.0 4 R.SSLLSHQSNFLSPANDFEPIEEEPEQEENDIRGNDFATPITQK.L * Mif2_01_itms.11356.11356.3 4.8433 0.2335 99.1 4434.9546 4431.683 9662.0 1 5.532 23.0 7 S.SLLSHQSNFLSPANDFEPIEEEPEQEENDIRGNDFATPI.T * Mif2_01_itms.11214.11214.3 4.7098 0.1981 97.9 4513.4346 4511.683 9729.7 1 5.193 23.7 3 S.SLLSHQSNFLS*PANDFEPIEEEPEQEENDIRGNDFATPI.T * Mif2_01_itms.08397.08397.3 5.0223 0.2202 100.0 4118.244 4118.286 9440.5 1 4.75 22.9 1 L.SHQSNFLSPANDFEPIEEEPEQEENDIRGNDFATPI.T * Mif2_01_itms.06392.06392.2 3.54 0.165 96.1 3079.2522 3078.1858 6049.6 1 4.48 32.0 2 H.QSNFLSPANDFEPIEEEPEQEENDIR.G * Mif2_01_itms.06452.06452.3 5.2487 0.3526 100.0 3081.4143 3078.1858 9181.0 2 6.171 28.0 2 H.QSNFLSPANDFEPIEEEPEQEENDIR.G * Mif2_01_itms.11649.11649.3 4.0164 0.3201 100.0 3845.6943 3845.936 5784.8 26 5.964 19.5 1 Q.SNFLS*PANDFEPIEEEPEQEENDIRGNDFATPI.T * Mif2_01_itms.07492.07492.3 4.3933 0.2718 99.1 4123.6445 4123.346 5846.2 2 5.838 20.7 1 Q.SNFLSPANDFEPIEEEPEQEENDIRGNDFATPITQK.L * Mif2_01_itms.10066.10066.3 5.4987 0.4656 100.0 3680.1543 3678.858 4609.4 1 7.643 29.8 3 S.NFLSPANDFEPIEEEPEQEENDIRGNDFATPI.T * Mif2_01_itms.11883.11883.3 5.2957 0.3327 100.0 3760.0444 3758.858 5830.9 1 6.096 26.6 1 S.NFLS*PANDFEPIEEEPEQEENDIRGNDFATPI.T * Mif2_01_itms.07779.07779.3 4.1911 0.2792 98.4 4037.7844 4036.2678 7605.4 1 5.542 22.1 2 S.NFLSPANDFEPIEEEPEQEENDIRGNDFATPITQK.L * Mif2_01_itms.05787.05787.2 4.5238 0.3762 100.0 2746.892 2748.873 5470.5 1 6.957 45.5 4 N.FLSPANDFEPIEEEPEQEENDIR.G * Mif2_01_itms.05816.05816.3 4.7777 0.2496 100.0 2751.5942 2748.873 7778.3 1 5.758 43.2 2 N.FLSPANDFEPIEEEPEQEENDIR.G * Mif2_01_itms.07403.07403.2 2.9763 0.2886 99.2 2828.112 2828.873 7190.0 2 5.616 36.4 1 N.FLS*PANDFEPIEEEPEQEENDIR.G * Mif2_01_itms.06509.06509.2 2.8139 0.2584 96.7 3046.5923 3049.1443 6114.6 1 4.783 32.0 1 A.NDFEPIEEEPEQEENDIRGNDFATPI.T * Mif2_01_itms.06446.06446.3 3.7759 0.2684 95.5 3051.2043 3049.1443 3516.6 1 5.122 35.0 1 A.NDFEPIEEEPEQEENDIRGNDFATPI.T * Mif2_01_itms.05204.05204.3 5.4102 0.3358 100.0 3406.3145 3406.5542 4468.3 1 5.558 35.7 2 A.NDFEPIEEEPEQEENDIRGNDFATPITQK.L * Mif2_01_itms.06675.06675.3 5.6023 0.3078 100.0 3520.7644 3519.7136 4322.9 1 5.913 31.9 4 A.NDFEPIEEEPEQEENDIRGNDFATPITQKL.S * Mif2_01_itms.05337.05337.3 5.4202 0.3392 100.0 3486.9243 3486.5981 3584.8 1 6.895 29.3 2 R.LTPDRITNKNVYS*DVPDLVADEDDDDRVNT.S * Mif2_01_itms.06842.06842.2 5.5408 0.4671 100.0 2135.0322 2133.057 5294.7 1 7.852 85.3 10 K.NVYS*DVPDLVADEDDDDR.V * Mif2_01_itms.07598.07598.3 5.9569 0.3137 100.0 3302.1543 3301.4993 5438.8 1 5.809 26.9 2 K.SNKPVLDIDKIVTYDES*EDEEEILAAQR.R * Mif2_01_itms.05556.05556.2 5.4053 0.2173 100.0 2274.3123 2271.2236 5647.2 1 5.27 73.5 9 K.IVT*YDES*EDEEEILAAQR.R * Mif2_01_itms.04725.04725.2 3.4734 0.256 100.0 1797.5122 1796.9286 2734.8 1 5.247 64.3 1 K.ENLIPEDPNEDIIER.I * Mif2_01_itms.05140.05140.2 2.8796 0.2235 95.5 1514.2722 1512.5731 5720.4 1 5.38 70.8 1 R.IES*GGIENGEWLK.H * Mif2_01_itms.06161.06161.2 2.5773 0.3213 97.8 1849.5721 1853.085 8479.1 166 5.762 34.4 1 R.IESGGIENGEWLKHGIL.E * Mif2_01_itms.06268.06268.2 3.8046 0.1627 97.9 2054.7322 2053.2793 8936.2 63 4.515 41.7 1 R.IESGGIENGEWLKHGILEA.N * Mif2_01_itms.02427.02427.2 2.7499 0.2248 97.8 981.3122 981.13983 4232.6 1 5.351 87.5 1 K.HGILEANVK.I * Mif2_01_itms.04220.04220.3 4.1853 0.2493 100.0 1937.5144 1934.151 5714.5 1 5.96 46.9 1 A.NVKISDTKEETKDEIIA.F * Mif2_01_itms.05408.05408.3 5.7942 0.3087 100.0 2936.9944 2936.2427 5379.1 1 5.81 40.0 6 K.ISDTKEETKDEIIAFAPNLSQTEQVK.D * Mif2_01_itms.05111.05111.3 5.3205 0.2912 100.0 3018.8643 3016.2427 7881.3 1 4.871 31.0 1 K.ISDTKEETKDEIIAFAPNLS*QTEQVK.D * Mif2_01_itms.05186.05186.3 6.4543 0.2873 100.0 2394.0244 2391.6372 7148.0 1 6.372 46.2 2 K.EETKDEIIAFAPNLSQTEQVK.D * Mif2_01_itms.05451.05451.2 3.8563 0.1868 99.2 2471.7522 2471.6372 4581.6 1 4.578 57.5 2 K.EETKDEIIAFAPNLS*QTEQVK.D * Mif2_01_itms.05505.05505.3 4.3395 0.308 100.0 2473.2544 2471.6372 9305.2 2 5.128 40.0 1 K.EETKDEIIAFAPNLS*QTEQVK.D * Mif2_01_itms.05649.05649.2 4.2534 0.2491 100.0 1904.0521 1904.1272 5843.2 1 6.856 65.6 2 K.DEIIAFAPNLSQTEQVK.D * Mif2_01_itms.08318.08318.2 5.7996 0.3605 100.0 1818.6322 1817.0204 5718.5 1 7.232 75.0 11 K.DTKDENFALEIMFDK.H * Mif2_01_itms.08354.08354.3 5.1543 0.1552 100.0 1820.3043 1817.0204 7963.9 1 4.308 53.6 8 K.DTKDENFALEIMFDK.H * Mif2_01_itms.10130.10130.2 5.5372 0.1122 100.0 1474.6122 1472.6527 9077.8 1 6.058 86.4 18 K.DENFALEIMFDK.H * Mif2_01_itms.07070.07070.2 3.3523 0.3358 100.0 1902.3121 1900.1008 4854.9 19 5.311 43.8 2 K.GSTFQIPAFNEYAIANR.G * Mif2_01_itms.08213.08213.2 4.4348 0.3736 100.0 2076.152 2075.211 9553.6 2 7.028 50.0 10 K.MFFVQVTVSEDANDDNDK.E * Mif2_01_itms.27172.27172.3 4.3935 0.2698 99.1 3346.0144 3348.3564 8756.8 30 4.537 22.2 2 K.MFFVQVTVSEDANDDNDKELDS*T*FDTFG.- * Mif2_01_itms.12524.12524.3 4.6671 0.2176 97.7 3347.0645 3348.3564 7353.0 1 4.053 32.4 3 K.MFFVQVTVSEDANDDNDKELDS*TFDT*FG.- * Mif2_01_itms.12546.12546.3 4.6329 0.1997 97.2 3348.7144 3348.3564 6935.3 1 4.5 26.9 1 K.MFFVQVTVSEDANDDNDKELDST*FDT*FG.- * Mif2_01_itms.05571.05571.2 5.0316 0.3066 100.0 2478.9321 2478.4956 9846.5 1 6.225 59.5 2 Q.VTVSEDANDDNDKELDSTFDTF.G YBL003C 2 5 22.0% 132 13989 10.7 U HTA2 SGDID:S000000099, Chr II from 235795-235397, reverse complement, Verified ORF, "One of two nearly identical (see also HTA1) histone H2A subtypes; core histone required for chromatin assembly and chromosome function; DNA damage-dependent phosphorylation by Mec1p facilitates DNA repair; acetylated by Nat4p " YDR225W 2 5 22.0% 132 13989 10.7 U HTA1 SGDID:S000002633, Chr IV from 915524-915922, Verified ORF, "One of two nearly identical (see also HTA2) histone H2A subtypes; core histone required for chromatin assembly and chromosome function; DNA damage-dependent phosphorylation by Mec1p facilitates DNA repair; acetylated by Nat4p " Mif2_01_itms.35487.35487.2 5.6406 0.4463 100.0 2946.7122 2947.4014 10358.3 1 8.404 46.4 1 R.IGSGAPVYLTAVLEYLAAEILELAGNAAR.D Mif2_01_itms.35576.35576.3 6.2866 0.3901 100.0 2948.4543 2947.4014 7821.1 1 7.353 33.9 4 R.IGSGAPVYLTAVLEYLAAEILELAGNAAR.D contaminant_KERATIN02 6 17 17.0% 622 61987 5.2 U no description * Mif2_01_itms.01166.01166.2 4.7644 0.5181 100.0 1232.3322 1233.2833 5726.8 1 9.541 86.7 2 T.SGGGGGGGLGSGGSIR.S * Mif2_01_itms.01304.01304.2 3.9885 0.3855 100.0 1146.0922 1146.2052 5202.2 1 7.246 82.1 3 S.GGGGGGGLGSGGSIR.S * Mif2_01_itms.00524.00524.2 3.3562 0.3088 100.0 1236.8322 1236.2401 6356.4 1 6.42 75.0 6 R.FSSSSGYGGGSSR.V * Mif2_01_itms.12879.12879.3 3.9039 0.3297 100.0 2905.4043 2904.1597 4688.2 1 5.849 34.4 1 K.NYSPYYNTIDDLKDQIVDLTVGNNK.T * Mif2_01_itms.08972.08972.3 6.4742 0.4088 100.0 3266.5144 3266.413 9920.4 1 7.717 33.9 4 K.DIENQYETQITQIEHEVSSSGQEVQSSAK.E * Mif2_01_itms.00305.00305.2 5.127 0.2947 100.0 1794.4521 1792.7324 6640.7 1 8.268 54.5 1 R.GGSGGSYGGGGSGGGYGGGSGSR.G YKL049C 3 9 13.5% 229 26841 9.3 U CSE4 SGDID:S000001532, Chr XI from 346408-345719, reverse complement, Verified ORF, "Centromere protein that resembles histones, required for proper kinetochore function; homolog of human CENP-A" * Mif2_01_itms.03731.03731.3 4.645 0.3276 100.0 1990.4944 1988.1245 7881.5 1 5.863 51.5 2 R.SLSNVNRLAGDQQSINDR.A * Mif2_01_itms.00812.00812.2 3.6642 0.3161 100.0 1217.1522 1217.281 9098.8 1 6.395 85.0 6 R.LAGDQQSINDR.A * Mif2_01_itms.05877.05877.2 3.3138 0.3615 100.0 1463.6721 1461.7446 8593.7 4 5.969 62.5 1 R.STDLLISKIPFAR.L contaminant_gi|67568|pir||ELPG 4 11 12.8% 266 28821 8.1 U pancreatic elastase (EC 3.4.21.36) I precursor - pig * Mif2_01_itms.06416.06416.2 4.3422 0.2418 100.0 2122.652 2120.3257 5200.2 1 5.879 66.7 5 K.IVVHPYWNTDDVAAGYDIA.L * Mif2_01_itms.05744.05744.2 3.8963 0.2433 100.0 2007.5122 2007.1663 5654.6 1 5.893 55.9 2 I.VVHPYWNTDDVAAGYDIA.L * Mif2_01_itms.12246.12246.2 3.1636 0.3351 100.0 1539.1921 1537.7557 7342.0 1 6.548 65.4 1 R.VSAYISWINNVIAS.N * Mif2_01_itms.12131.12131.2 4.7547 0.3144 100.0 1652.7322 1651.8595 7099.6 1 7.123 75.0 3 R.VSAYISWINNVIASN.- contaminant_gi|135017|sp|P07518|SUBT_BAC 4 8 7.6% 275 27656 6.8 U SUBTILISIN (ALKALINE MESENTERICOPEPTIDASE) * Mif2_01_itms.06428.06428.2 4.5495 0.4445 100.0 2045.4722 2045.3867 5876.4 1 7.27 55.0 3 A.ALNNSIGVLGVAPSSALYAVK.V * Mif2_01_itms.05606.05606.2 4.1908 0.3692 100.0 1862.3322 1861.1484 7116.5 1 5.995 58.3 2 L.NNSIGVLGVAPSSALYAVK.V * Mif2_01_itms.05638.05638.3 4.543 0.3064 100.0 1863.3243 1861.1484 5170.3 1 5.154 44.4 2 L.NNSIGVLGVAPSSALYAVK.V * Mif2_01_itms.03398.03398.2 2.9009 0.3841 100.0 1165.2122 1163.3593 3942.7 1 5.827 68.2 1 L.GVAPSSALYAVK.V contaminant_KERATIN03 2 3 6.9% 593 59519 5.2 U no description * Mif2_01_itms.11823.11823.3 4.9663 0.3124 100.0 2875.3442 2874.2134 8017.8 1 5.777 30.8 2 R.NVSTGDVNVEMNAAPGVDLTQLLNNMR.S * Mif2_01_itms.02176.02176.2 3.2067 0.2006 96.6 1263.2922 1263.3066 4046.2 2 5.242 69.2 1 R.SLLEGEGSSGGGGR.G contaminant_KERATIN18 2 10 3.7% 562 59822 8.0 U no description contaminant_KERATIN22 2 10 3.3% 645 65865 8.0 U no description contaminant_KERATIN21 2 10 5.9% 357 39219 5.2 U no description Mif2_01_itms.09075.09075.2 4.354 0.141 100.0 1332.1721 1330.5211 6371.1 1 5.25 81.8 2 R.NLDLDSIIAEVK.A Mif2_01_itms.21614.21614.3 6.0683 0.3998 100.0 2421.8342 2419.694 4249.3 1 7.834 46.2 8 R.NLDLDSIIAEVKAQYEEIAQR.S Proteins Peptide IDs Spectra Unfiltered 9654 40539 44076 Filtered 8 87 287 Forward matches 8 87 287 Decoy matches 0 0 0 Forward FP rate 0.0 0.0 0.0 Classification Nonredundant Proteins Redundant Proteins Unclassified 0 0