DTASelect v1.9 /wfs/bfd/3/scott/beth/tii6c_2 /wfs/dbase/nci/yeastorf4.fasta SEQUEST v.27 in SQT format. -o true Use criteria 1.8 Minimum +1 XCorr 2.5 Minimum +2 XCorr 3.5 Minimum +3 XCorr 0.08 Minimum DeltCN 1 Minimum charge state 3 Maximum charge state 0.0 Minimum ion proportion 1000 Maximum Sp rank -1.0 Minimum Sp score Include Modified peptide inclusion Any Tryptic status requirement true Multiple, ambiguous IDs allowed Ignore Peptide validation handling XCorr Purge duplicate peptides by protein false Include only loci with unique peptide true Remove subset proteins Ignore Locus validation handling 0 Minimum modified peptides per locus 10 Minimum redundancy for low coverage loci 2 Minimum peptides per locus Locus Sequence Count Spectrum Count Sequence Coverage Length MolWt pI Validation Status Descriptive Name Unique FileName XCorr DeltCN M+H+ CalcM+H+ TotalIntensity SpRank SpScore IonProportion Redundancy Sequence NRL_1MCOH 7 86 20.3% 428 46852 8.9 U owl|| Immunoglobulin g1 (igg1) (mcg) with a hinge deletion, chain H... * bethtii6c_2-01.1352.1352.1 2.7565 0.3931 1186.69 1187.381 5662.1 1 653.3 63.6 2 K.GPSVFPLAPSSK.S * bethtii6c_2-01.1308.1308.2 3.021 0.2411 1188.5 1187.381 3997.3 1 792.3 72.7 5 K.GPSVFPLAPSSK.S * bethtii6c_2-01.1913.1913.2 3.7013 0.3476 2206.25 2207.448 10489.2 1 590.3 38.1 1 W.NSGALTSGVHTFPAVLQSSGLY.S * bethtii6c_2-01.1932.1932.2 3.352 0.3133 2092.74 2093.344 7196.4 1 633.2 45.0 2 N.SGALTSGVHTFPAVLQSSGLY.S * bethtii6c_2-06.0018.0018.2 4.3122 0.3886 1809.69 1809.119 7845.9 1 1249.1 63.3 66 R.VVSVLTVLHQNWLDGK.E * bethtii6c_2-02.1634.1634.2 5.0108 0.4312 2544.58 2545.681 8406.0 1 2149.0 61.9 8 K.GFYPSDIAVEWESNGQPENNYK.T * bethtii6c_2-02.1652.1652.2 5.1382 0.454 1672.46 1672.875 8509.0 1 1716.7 71.4 2 T.PPVLDSDGSFFLYSK.L ORFP:YHL001W 3 7 18.8% 138 15153 10.9 U RPL14B SGDID:S0000993, Chr VIII from 104270-104398,104797-105084 ORFP:YKL006W 3 7 18.8% 138 15167 10.9 U RPL14A SGDID:S0001489, Chr XI from 431544-431672,432071-432358 bethtii6c_2-01.2461.2461.2 5.7101 0.529 2051.99 2052.468 7166.6 1 1196.3 61.1 4 R.QAINLGQVVLTPLTFALPR.G bethtii6c_2-01.2500.2500.3 5.0897 0.342 2052.08 2052.468 7833.3 1 1669.4 44.4 2 R.QAINLGQVVLTPLTFALPR.G bethtii6c_2-01.1385.1385.1 1.8912 0.0833 892.61 893.135 6287.4 7 342.9 75.0 1 R.FQVMVLR.K ORFP:YHR121W 2 3 17.1% 187 21314 9.4 U YHR121W SGDID:S0001163, Chr VIII from 352758-353321 * bethtii6c_2-02.0914.0914.2 4.6425 0.5191 1932.48 1933.125 9307.2 1 1552.0 65.6 2 R.LYSFNSSNNTLTIQTTK.K * bethtii6c_2-05.0811.0811.2 3.8045 0.4586 1696.0 1695.916 9883.3 1 1233.9 64.3 1 K.VLHEGSNQSITLIQR.I KERATIN03 7 21 16.9% 593 59519 5.2 U no description * bethtii6c_2-01.1489.1489.2 4.7677 0.4848 1854.63 1854.927 8584.6 1 1389.9 55.0 1 I.SSSKGSLGGGFSSGGFSGGSF.S * bethtii6c_2-02.1015.1015.2 3.6381 0.5247 1708.5 1708.784 7485.5 1 802.9 50.0 1 K.GSLGGGFSSGGFSGGSFSR.G * bethtii6c_2-05.2271.2271.3 5.486 0.3369 2369.32 2368.652 8323.2 1 2187.4 45.0 1 K.NQILNLTTDNANILLQIDNAR.L * bethtii6c_2-06.1826.1826.2 4.1588 0.4046 1798.23 1798.09 8661.7 1 690.5 53.3 1 R.NVQALEIELQSQLALK.Q * bethtii6c_2-01.2728.2728.3 4.7952 0.4513 2747.96 2748.075 5476.5 1 829.3 36.4 4 R.YCVQLSQIQAQISALEEQLQQIR.A * bethtii6c_2-01.2626.2626.2 6.6457 0.4887 2748.99 2748.075 8697.6 1 2809.8 65.9 11 R.YCVQLSQIQAQISALEEQLQQIR.A * bethtii6c_2-02.1114.1114.2 4.9357 0.3426 2084.51 2084.21 10499.6 1 2431.8 71.9 2 R.AETECQNTEYQQLLDIK.I ORFP:YFR031C-A 2 2 16.5% 254 27408 11.1 U RPL2A SGDID:S0002104, Chr VI from 220494-220497,220645-221405, reverse complement ORFP:YIL018W 2 2 16.5% 254 27408 11.1 U RPL2B SGDID:S0001280, Chr IX from 316766-316769,317170-317930 bethtii6c_2-06.1656.1656.3 4.9001 0.449 3176.67 3177.582 10261.5 1 1124.4 28.3 1 K.KASLNVGNVLPLGSVPEGTIVSNVEEKPGDR.G bethtii6c_2-01.1110.1110.1 1.9905 0.1663 955.42 956.133 5338.9 54 177.9 50.0 1 R.GVIGVIAGGGR.V KERATIN02 5 8 16.2% 622 61987 5.2 U no description * bethtii6c_2-06.1516.1516.2 4.0847 0.5714 2705.97 2706.761 8588.8 1 885.3 35.5 1 R.GGGGSFGYSYGGGSGGGFSASSLGGGFGGGSR.G * bethtii6c_2-01.1258.1258.2 3.1879 0.4715 1428.43 1428.504 7266.4 1 641.1 53.1 1 S.SLGGGFGGGSRGFGGAS.G * bethtii6c_2-01.2605.2605.2 5.7209 0.4893 2738.39 2739.039 10805.8 1 2218.5 54.5 2 R.YCGQLQMIQEQISNLEAQITDVR.Q * bethtii6c_2-02.1600.1600.2 5.2237 0.399 2096.05 2096.308 9758.8 1 1826.6 65.6 3 R.QEIECQNQEYSLLLSIK.M * bethtii6c_2-06.1135.1135.2 4.9242 0.3758 1792.49 1792.732 8947.3 1 1400.2 52.3 1 R.GGSGGSYGGGGSGGGYGGGSGSR.G ORFP:YER038C 6 17 15.5% 464 53772 5.3 U KRE29 SGDID:S0000840, Chr V from 226857-228251, reverse complement * bethtii6c_2-06.1306.1306.2 3.234 0.2179 1074.47 1074.352 6840.0 1 1268.8 87.5 2 R.KLVNYVPLK.I * bethtii6c_2-02.1854.1854.2 5.6407 0.4924 1958.06 1959.16 7242.6 1 1828.4 70.6 9 K.IFNLGDSFDDTITTTVAK.L * bethtii6c_2-01.2498.2498.2 5.5346 0.548 1932.85 1933.221 7606.8 1 2139.2 75.0 3 K.CPSITNLLVLFGVNQEK.C * bethtii6c_2-01.2521.2521.3 3.8155 0.1135 1934.29 1933.221 6193.5 1 1097.0 45.3 1 K.CPSITNLLVLFGVNQEK.C * bethtii6c_2-05.2334.2334.2 3.5683 0.344 2294.42 2293.496 9072.0 1 747.3 44.7 1 K.DCILDISNETTNDVEISILK.G * bethtii6c_2-01.1836.1836.1 2.1507 0.158 891.53 892.086 7727.5 2 554.0 71.4 1 K.GILNLFSK.I ORFP:YML023C 7 19 15.1% 556 64013 6.0 U YML023C SGDID:S0004485, Chr XIII from 226994-228664, reverse complement * bethtii6c_2-05.0539.0539.2 3.8392 0.417 1400.61 1400.577 8478.1 1 1562.0 81.8 1 Y.FIQHEVAQNVSK.S * bethtii6c_2-01.2552.2552.2 5.048 0.5378 1810.13 1811.045 5792.1 1 1223.3 70.0 7 R.LSESPLAVFFESLNTR.N * bethtii6c_2-01.2572.2572.3 3.6336 0.3221 1810.53 1811.045 7023.8 1 839.4 41.7 1 R.LSESPLAVFFESLNTR.N * bethtii6c_2-02.1248.1248.2 3.3926 0.3746 1585.61 1585.719 5040.4 1 860.7 77.3 2 R.FSEYVFLNCDYK.L * bethtii6c_2-02.1919.1919.2 3.7464 0.4314 1397.5 1397.614 6767.2 1 1210.7 77.3 5 R.TLASFNDILQFK.K * bethtii6c_2-01.2441.2441.2 3.4651 0.4294 1645.19 1644.992 5559.8 1 1331.1 78.6 2 Y.FIPLLAEGTLSEILK.D * bethtii6c_2-06.2295.2295.2 2.7771 0.2819 1943.35 1942.326 7816.5 1 448.6 43.8 1 D.PPLLYPIVSQMFGVHDK.S ORFP:YOL034W 9 15 13.4% 1093 126037 8.2 U SMC5 SGDID:S0005394, Chr XV from 259923-263204 * bethtii6c_2-05.1095.1095.2 2.8484 0.3687 1701.99 1702.004 4145.9 1 428.0 53.3 1 K.IAKPDLSSFQPGSIIK.I * bethtii6c_2-02.1094.1094.2 5.1594 0.5637 1859.62 1860.028 5406.6 1 1435.0 76.7 3 R.SDYLINDYQVSESVVK.T * bethtii6c_2-06.2534.2534.3 3.5943 0.2086 3755.36 3754.155 9983.2 1 481.3 18.5 1 I.NDYQVSESVVKTLVAQLNIQLDNLCQFLSQER.V * bethtii6c_2-06.2534.2534.2 5.6217 0.4249 2503.93 2504.812 9983.2 1 1570.9 52.5 1 K.TLVAQLNIQLDNLCQFLSQER.V * bethtii6c_2-06.1502.1502.2 4.506 0.4438 1754.87 1755.067 5220.1 1 1164.4 75.0 1 K.KGEIELHSQLLPYVK.V * bethtii6c_2-01.2824.2824.3 5.6614 0.5165 3330.1 3330.787 11146.5 1 1469.3 28.4 3 K.ILEPPIMTVSAINAQFAAYLAQCVDYNTSK.A * bethtii6c_2-06.2210.2210.2 5.0665 0.5342 1933.74 1934.113 9080.8 1 1845.4 68.8 1 R.DLGFEGYLSDFITGDKR.V * bethtii6c_2-02.0347.0347.2 3.6111 0.3188 1279.35 1279.479 4309.9 1 946.0 80.0 2 K.LKEDHAVLEPK.L * bethtii6c_2-02.1202.1202.2 3.3675 0.4275 2287.43 2288.543 7999.1 1 668.7 44.7 2 K.AMVENACAENTSQYFLITPK.L ORFP:YNL096C 3 3 12.6% 190 21634 9.9 U RPS7B SGDID:S0005040, Chr XIV from 443395-443538,443884-444312, reverse complement * bethtii6c_2-06.2028.2028.2 2.827 0.3275 1726.3 1726.115 3911.2 1 510.4 60.0 1 K.ALVLFVPVPALSAYHK.V bethtii6c_2-06.1350.1350.1 2.1299 0.1959 984.63 985.174 4972.9 2 434.9 71.4 1 R.HVIFLAER.R bethtii6c_2-06.1351.1351.2 2.5412 0.2504 985.5 985.174 3191.2 1 650.7 92.9 1 R.HVIFLAER.R ORFP:YBR031W 2 7 12.4% 362 39092 10.6 U RPL4A SGDID:S0000235, Chr II from 300125-301213 ORFP:YDR012W 2 7 12.4% 362 39062 10.6 U RPL4B SGDID:S0002419, Chr IV from 471849-472937 bethtii6c_2-01.2372.2372.2 4.6687 0.3803 1820.45 1821.127 10562.8 1 1449.1 55.6 6 R.YATASAIAATAVASLVLAR.G bethtii6c_2-06.1956.1956.2 4.0926 0.4265 2613.01 2612.992 7607.1 1 1056.3 46.0 1 R.NVPGVETANVASLNLLQLAPGAHLGR.F ORFP:YJR123W 2 6 12.4% 225 25039 8.6 U RPS5 SGDID:S0003884, Chr X from 651595-652272 * bethtii6c_2-01.1729.1729.2 4.9486 0.4392 1340.57 1340.609 8315.3 1 1838.8 79.2 2 R.VNQAIALLTIGAR.E * bethtii6c_2-01.2245.2245.2 4.6314 0.301 1587.7 1587.811 7886.9 1 2263.2 78.6 4 K.TIAETLAEELINAAK.G KERATIN13 3 3 9.3% 643 65494 6.6 U no description * bethtii6c_2-06.2287.2287.2 4.028 0.4539 1995.14 1995.202 3928.8 1 598.1 63.3 1 R.THNLEPYFESFINNLR.R * bethtii6c_2-06.1172.1172.2 2.9876 0.3298 2384.41 2385.298 7766.0 1 319.5 28.3 1 R.GGGGGGYGSGGSSYGSGGGSYGSGGGGGGGR.G * bethtii6c_2-06.1588.1588.2 2.7499 0.1859 2216.58 2214.142 8546.9 94 226.7 24.1 1 S.GGGSYGSGGGGGGGRGSYGSGGGSYGSG.G KERATIN22 5 10 8.1% 645 65865 8.0 U no description * bethtii6c_2-06.1254.1254.1 2.8344 0.3179 1320.56 1321.354 4660.9 1 407.0 56.7 1 R.HGGGGGGFGGGGFGSR.S * bethtii6c_2-06.1251.1251.2 4.8382 0.5191 1321.65 1321.354 6769.2 1 2131.6 86.7 1 R.HGGGGGGFGGGGFGSR.S * bethtii6c_2-01.1829.1829.3 5.7483 0.4834 2833.58 2832.881 11066.9 1 2659.3 31.4 1 R.GGGFGGGSGFGGGSGFGGGSGFSGGGFGGGGFGGGR.F * bethtii6c_2-01.1653.1653.3 5.8646 0.3651 2400.12 2400.445 10014.1 1 3262.0 38.8 2 G.GSGFGGGSGFGGGSGFSGGGFGGGGFGGGR.F * bethtii6c_2-01.1676.1676.2 5.2157 0.436 2400.59 2400.445 8043.2 1 2415.7 55.2 5 G.GSGFGGGSGFGGGSGFSGGGFGGGGFGGGR.F ORFP:YLR383W 7 21 7.8% 1114 128008 7.5 U RHC18 SGDID:S0004375, Chr XII from 885288-888632 * bethtii6c_2-01.2024.2024.2 5.1775 0.3992 1329.17 1329.623 8241.5 1 2583.9 84.6 6 K.SAILTAITIGLGAK.A * bethtii6c_2-01.2036.2036.1 2.9563 0.3611 1329.5 1329.623 10728.9 4 695.3 50.0 2 K.SAILTAITIGLGAK.A * bethtii6c_2-02.1410.1410.2 5.2087 0.5156 1957.9 1958.181 6373.3 1 1232.1 65.6 5 K.YGAYQQGIFGNEIIVER.I * bethtii6c_2-02.0986.0986.2 3.4296 0.3625 1544.49 1544.745 7125.9 1 1036.4 69.2 2 R.EVNNSLVVSLQDVK.N * bethtii6c_2-02.0999.0999.2 4.9174 0.3854 1534.4 1534.753 9564.3 1 2341.0 75.0 3 R.AISSSLNAFVVSNPK.D * bethtii6c_2-01.1496.1496.2 3.6614 0.3124 1328.46 1328.572 7218.2 1 1333.5 81.8 2 R.NPVNVNMALSLR.D * bethtii6c_2-05.2291.2291.2 3.8389 0.3968 1664.74 1663.908 7451.0 1 1007.4 64.3 1 K.SLGLSQEEVIALFEK.C ORFP:YGR214W 2 2 5.2% 252 28024 4.7 U RPS0A SGDID:S0003446, Chr VII from 920577-920666,921122-921790 ORFP:YLR048W 2 2 5.2% 252 27962 4.7 U RPS0B SGDID:S0004038, Chr XII from 242233-242322,242682-243350 bethtii6c_2-06.1207.1207.1 2.7406 0.4082 1269.6 1270.434 4949.1 1 306.7 58.3 1 K.FAAHTGATPIAGR.F bethtii6c_2-06.1206.1206.2 2.9128 0.3942 1270.65 1270.434 5751.4 1 880.6 75.0 1 K.FAAHTGATPIAGR.F Proteins Peptide IDs Copies Unfiltered 5371 10796 37195 Redundant 20 72 230 Nonredundant 16 72 230 Classification Nonredundant Proteins Redundant Proteins Unclassified 0 0