DTASelect v1.9 /wfs/bfd/3/scott/beth/tii3h /wfs/dbase/nci/yeastorf4.fasta SEQUEST v.27 in SQT format. -o true Use criteria 1.8 Minimum +1 XCorr 2.5 Minimum +2 XCorr 3.5 Minimum +3 XCorr 0.08 Minimum DeltCN 1 Minimum charge state 3 Maximum charge state 0.0 Minimum ion proportion 1000 Maximum Sp rank -1.0 Minimum Sp score Include Modified peptide inclusion Any Tryptic status requirement true Multiple, ambiguous IDs allowed Ignore Peptide validation handling XCorr Purge duplicate peptides by protein false Include only loci with unique peptide true Remove subset proteins Ignore Locus validation handling 0 Minimum modified peptides per locus 10 Minimum redundancy for low coverage loci 2 Minimum peptides per locus Locus Sequence Count Spectrum Count Sequence Coverage Length MolWt pI Validation Status Descriptive Name Unique FileName XCorr DeltCN M+H+ CalcM+H+ TotalIntensity SpRank SpScore IonProportion Redundancy Sequence ORFP:YBL087C 3 7 31.4% 137 14473 10.3 U RPL23A SGDID:S0000183, Chr II from 59815-59856,60361-60732, reverse complement ORFP:YER117W 3 7 31.4% 137 14473 10.3 U RPL23B SGDID:S0000919, Chr V from 396765-396806,397278-397649 bethtii3h-01.2091.2091.2 4.3057 0.467 2019.44 2017.274 7896.9 1 1535.6 63.2 4 R.ISLGLPVGAIMNCADNSGAR.N bethtii3h-01.1607.1607.1 1.9211 0.1007 933.13 934.167 6687.3 135 487.5 71.4 1 R.NLYIIAVK.G bethtii3h-01.2108.2108.2 4.4308 0.4671 1503.99 1504.843 5730.5 1 1061.5 71.4 2 R.LPAASLGDMVMATVK.K KERATIN03 11 42 27.2% 593 59519 5.2 U no description * bethtii3h-05.1121.1121.2 2.7491 0.4205 1707.76 1708.784 7815.7 1 572.8 44.4 1 K.GSLGGGFSSGGFSGGSFSR.G * bethtii3h-06.0312.0312.2 3.166 0.4687 1119.0 1119.142 6556.4 1 1324.1 94.4 1 K.HGNSHQGEPR.D * bethtii3h-05.2440.2440.3 6.4097 0.3411 2368.99 2368.652 10697.7 1 2785.2 45.0 2 K.NQILNLTTDNANILLQIDNAR.L * bethtii3h-01.2751.2751.2 4.3808 0.5112 2096.06 2097.385 9106.1 1 2121.4 67.6 6 K.ADLEMQIESLTEELAYLK.K * bethtii3h-01.0152.0152.1 2.2007 0.1869 1110.55 1110.168 4577.6 2 336.9 62.5 1 K.DAEAWFNEK.S * bethtii3h-01.0156.0156.2 3.188 0.4295 1996.53 1998.151 8318.6 1 803.5 56.2 3 K.ELTTEIDNNIEQISSYK.S * bethtii3h-01.1961.1961.2 2.9583 0.2781 1797.31 1798.09 10625.7 1 1168.3 63.3 1 R.NVQALEIELQSQLALK.Q * bethtii3h-06.2660.2660.2 5.6397 0.5125 2746.51 2748.075 8820.0 1 2146.2 59.1 9 R.YCVQLSQIQAQISALEEQLQQIR.A * bethtii3h-02.3293.3293.3 4.1921 0.5024 2747.29 2748.075 5488.2 1 852.9 35.2 4 R.YCVQLSQIQAQISALEEQLQQIR.A * bethtii3h-02.1378.1378.2 3.8556 0.3093 2082.58 2084.21 8210.3 2 764.6 53.1 1 R.AETECQNTEYQQLLDIK.I * bethtii3h-05.2896.2896.2 3.2232 0.3648 1435.26 1435.623 9347.1 1 1010.7 70.0 13 K.IRLENEIQTYR.S KERATIN02 14 75 26.7% 622 61987 5.2 U no description * bethtii3h-01.0217.0217.2 3.9657 0.464 1232.96 1233.283 5862.5 1 1381.3 73.3 1 T.SGGGGGGGLGSGGSIR.S * bethtii3h-01.1895.1895.3 4.3447 0.4997 2705.07 2706.761 9871.3 1 991.8 25.8 3 R.GGGGSFGYSYGGGSGGGFSASSLGGGFGGGSR.G * bethtii3h-01.1837.1837.2 4.8118 0.572 2705.14 2706.761 10024.3 1 1251.3 37.1 2 R.GGGGSFGYSYGGGSGGGFSASSLGGGFGGGSR.G * bethtii3h-01.1505.1505.2 5.5276 0.6246 2025.23 2024.07 8363.8 1 1074.3 47.8 4 Y.SYGGGSGGGFSASSLGGGFGGGSR.G * bethtii3h-01.1869.1869.2 2.8209 0.3323 1937.77 1936.992 8156.4 1 404.3 34.1 1 S.YGGGSGGGFSASSLGGGFGGGSR.G * bethtii3h-01.1872.1872.1 1.8244 0.1241 1038.26 1039.093 3602.0 36 109.5 45.5 1 A.SSLGGGFGGGSR.G * bethtii3h-06.0362.0362.2 2.8057 0.1737 812.93 812.988 4553.3 2 791.3 92.9 1 K.KGPAAIQK.N * bethtii3h-01.2411.2411.3 4.7338 0.4715 2902.6 2904.16 4411.7 1 814.2 36.5 6 K.NYSPYYNTIDDLKDQIVDLTVGNNK.T * bethtii3h-01.2527.2527.2 3.0746 0.3508 2625.32 2626.88 12263.8 1 641.0 34.1 1 Y.SPYYNTIDDLKDQIVDLTVGNNK.T * bethtii3h-01.2579.2579.2 2.7469 0.288 2537.76 2539.802 11763.9 3 402.9 31.0 1 S.PYYNTIDDLKDQIVDLTVGNNK.T * bethtii3h-05.2436.2436.3 6.6257 0.5362 3264.45 3266.413 8077.7 1 2061.9 36.6 12 K.DIENQYETQITQIEHEVSSSGQEVQSSAK.E * bethtii3h-06.1804.1804.2 6.3219 0.4398 1838.37 1839.056 10768.5 1 3584.5 83.3 25 R.HGVQELEIELQSQLSK.K * bethtii3h-01.2731.2731.2 5.4462 0.4167 2738.45 2739.039 9452.7 1 1706.1 52.3 3 R.YCGQLQMIQEQISNLEAQITDVR.Q * bethtii3h-02.1915.1915.2 5.599 0.4993 2094.53 2096.308 7629.7 1 2318.2 81.2 14 R.QEIECQNQEYSLLLSIK.M ORFP:YOR096W 2 3 22.1% 190 21622 9.8 U RPS7A SGDID:S0005622, Chr XV from 505794-505937,506339-506767 * bethtii3h-01.2855.2855.3 3.6699 0.3357 3084.85 3085.478 10670.4 1 887.3 26.9 1 K.ILSQAPTELELQVAQAFVELENSSPELK.A * bethtii3h-01.2136.2136.2 3.8476 0.2826 1573.49 1573.87 4612.7 1 616.0 61.5 2 K.ILEDLVFPTEIVGK.R KERATIN13 10 22 18.8% 643 65494 6.6 U no description * bethtii3h-01.1648.1648.2 2.7761 0.1137 1798.39 1796.935 5760.4 9 406.2 40.0 2 G.AGGGFGSRSLAGSGGSIASIS.G * bethtii3h-01.1896.1896.2 2.9832 0.2468 1384.09 1384.488 6170.0 1 921.2 75.0 1 R.THNLEPYFESF.I * bethtii3h-06.2610.2610.2 3.5267 0.4873 1994.52 1995.202 4223.9 1 652.5 63.3 5 R.THNLEPYFESFINNLR.R * bethtii3h-01.0201.0201.2 3.3248 0.1355 1395.98 1394.568 9000.8 1 987.8 68.2 1 R.TNAENEFVTIKK.D * bethtii3h-01.0171.0171.1 2.4213 0.3372 1179.38 1180.303 5150.7 1 496.3 72.2 1 K.YEELQITAGR.H * bethtii3h-02.0404.0404.2 2.831 0.1247 1074.17 1074.222 6990.5 14 837.3 75.0 1 R.LRSEIDNVK.K * bethtii3h-06.0247.0247.2 2.6636 0.0828 1201.3 1202.396 5935.4 1 1025.8 77.8 1 R.LRSEIDNVKK.Q * bethtii3h-05.0740.0740.2 4.0472 0.4882 1844.84 1846.007 9463.7 1 1552.8 66.7 8 K.KQISNLQQSISDAEQR.G *2 bethtii3h-01.0185.0185.1 2.6965 0.3433 1277.49 1278.491 3692.8 2 321.2 65.0 1 K.LALDLEIATYR.T * bethtii3h-01.1327.1327.3 3.5652 0.284 2566.72 2566.725 4170.6 1 396.3 26.0 1 R.MSGECAPNVSVTVSTSHTSISGGGSR.G ORFP:YBR031W 3 3 15.5% 362 39092 10.6 U RPL4A SGDID:S0000235, Chr II from 300125-301213 ORFP:YDR012W 3 3 15.5% 362 39062 10.6 U RPL4B SGDID:S0002419, Chr IV from 471849-472937 bethtii3h-05.2713.2713.2 2.5153 0.2812 1819.3 1821.127 8787.8 1 1076.3 52.8 1 R.YATASAIAATAVASLVLAR.G bethtii3h-06.2101.2101.2 4.5734 0.3866 2611.09 2612.992 7722.3 1 1115.7 46.0 1 R.NVPGVETANVASLNLLQLAPGAHLGR.F bethtii3h-01.2056.2056.2 3.4773 0.3811 1313.12 1313.539 6869.8 1 1772.2 90.0 1 R.FVIWTEAAFTK.L KERATIN22 7 12 15.3% 645 65865 8.0 U no description * bethtii3h-06.1308.1308.2 2.8174 0.4535 1321.23 1321.354 7516.0 1 636.8 50.0 1 R.HGGGGGGFGGGGFGSR.S * bethtii3h-01.0972.0972.1 2.1345 0.2886 831.39 831.988 4279.3 1 372.7 68.8 1 R.SLVGLGGTK.S * bethtii3h-01.1892.1892.2 4.159 0.5415 1839.11 1840.005 8731.0 1 1761.7 59.5 3 K.SISISVAGGGGGFGAAGGFGGR.G * bethtii3h-01.2048.2048.3 3.7544 0.329 2833.13 2832.881 12266.1 1 882.9 22.1 1 R.GGGFGGGSGFGGGSGFGGGSGFSGGGFGGGGFGGGR.F * bethtii3h-01.1920.1920.3 6.4855 0.4801 2399.24 2400.445 9133.4 1 4149.3 44.8 2 G.GSGFGGGSGFGGGSGFSGGGFGGGGFGGGR.F * bethtii3h-01.1924.1924.2 4.8766 0.4413 2402.47 2400.445 9255.8 1 2484.7 51.7 3 G.GSGFGGGSGFGGGSGFSGGGFGGGGFGGGR.F * bethtii3h-01.2544.2544.2 2.9372 0.2918 1847.25 1848.149 3709.1 8 218.3 43.3 1 R.PINLEPIFQGYIDSLK.R ORFP:YIL083C 3 7 14.5% 365 41893 8.3 U YIL083C SGDID:S0001345, Chr IX from 203553-204650, reverse complement * bethtii3h-06.2281.2281.2 4.6321 0.5272 2166.57 2168.417 7828.3 1 816.8 50.0 2 R.GASSAEQFLANGYSVIFLHR.E * bethtii3h-06.2206.2206.2 5.576 0.5578 2174.31 2174.372 8078.9 1 2155.4 69.4 4 R.SFSHSINTLFLDYIDSEGK.I * bethtii3h-06.1636.1636.2 4.6526 0.3841 1669.23 1669.924 8282.1 1 2179.6 84.6 1 R.YNHQLVIGNLLQTR.N ORFP:YHL001W 2 2 13.8% 138 15153 10.9 U RPL14B SGDID:S0000993, Chr VIII from 104270-104398,104797-105084 ORFP:YKL006W 2 2 13.8% 138 15167 10.9 U RPL14A SGDID:S0001489, Chr XI from 431544-431672,432071-432358 bethtii3h-01.2587.2587.3 3.5467 0.2659 2051.26 2052.468 8380.6 1 1082.2 37.5 1 R.QAINLGQVVLTPLTFALPR.G bethtii3h-01.2593.2593.2 5.1471 0.4861 2052.29 2052.468 7080.3 1 1326.8 63.9 1 R.QAINLGQVVLTPLTFALPR.G ORFP:YJR123W 2 3 12.4% 225 25039 8.6 U RPS5 SGDID:S0003884, Chr X from 651595-652272 * bethtii3h-01.1959.1959.2 4.4574 0.4015 1339.65 1340.609 9045.9 1 2151.3 83.3 2 R.VNQAIALLTIGAR.E * bethtii3h-01.2467.2467.2 4.219 0.3719 1586.98 1587.811 7600.7 1 1436.8 67.9 1 K.TIAETLAEELINAAK.G NRL_1MCOH 3 6 8.9% 428 46852 8.9 U owl|| Immunoglobulin g1 (igg1) (mcg) with a hinge deletion, chain H... * bethtii3h-01.1555.1555.2 3.1105 0.2802 1186.77 1187.381 4139.2 1 809.0 72.7 2 K.GPSVFPLAPSSK.S * bethtii3h-06.2148.2148.2 3.2688 0.1885 1808.32 1809.119 6821.0 1 604.1 50.0 1 R.VVSVLTVLHQNWLDGK.E * bethtii3h-01.1363.1363.2 3.1619 0.2213 1161.26 1162.338 5500.0 1 780.8 72.2 3 K.NQVSLTCLVK.G KERATIN17 2 4 7.3% 590 62461 8.1 U no description * bethtii3h-01.2500.2500.2 2.6459 0.1105 2286.76 2286.434 10254.0 19 305.2 27.8 1 F.GGGAGGGFGLGGGAGFGGGFGGPGFPVC.P bethtii3h-01.2367.2367.2 4.0894 0.4078 1891.28 1892.122 5945.9 1 867.4 67.9 3 R.QNLEPLFEQYINNLR.R ORFP:YBR118W 2 2 5.0% 458 50033 9.0 U TEF2 SGDID:S0000322, Chr II from 477628-479004 ORFP:YPR080W 2 2 5.0% 458 50033 9.0 U TEF1 SGDID:S0006284, Chr XVI from 700590-701966 bethtii3h-05.0693.0693.2 3.1395 0.4247 1355.58 1356.524 8110.0 1 1142.4 72.7 1 K.YQVTVIDAPGHR.D bethtii3h-01.1216.1216.2 3.3198 0.3225 1025.83 1026.224 5360.8 2 880.0 80.0 1 K.IGGIGTVPVGR.V ORFP:YFR031C-A 2 2 4.3% 254 27408 11.1 U RPL2A SGDID:S0002104, Chr VI from 220494-220497,220645-221405, reverse complement ORFP:YIL018W 2 2 4.3% 254 27408 11.1 U RPL2B SGDID:S0001280, Chr IX from 316766-316769,317170-317930 bethtii3h-01.1304.1304.1 2.4715 0.3692 955.43 956.133 4518.6 14 180.1 50.0 1 R.GVIGVIAGGGR.V bethtii3h-01.1303.1303.2 3.3984 0.4201 955.58 956.133 5504.2 1 1428.2 85.0 1 R.GVIGVIAGGGR.V Proteins Peptide IDs Copies Unfiltered 5545 9746 35832 Redundant 19 66 190 Nonredundant 14 66 190 Classification Nonredundant Proteins Redundant Proteins Unclassified 0 0