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View Protein Complex Details

Complex Overview

From Publication: Qiu J, Noble WS (2008) Predicting Co-Complexed Protein Pairs from Heterogeneous Data. PLoS Comput Biol 4(4): e1000054. doi:10.1371/journal.pcbi.1000054
Notes: Classifier used Gene Ontology annotations. [FDR: 0.038] [SVM Score: 0.672575270498]
Complex Size: 2 proteins

Complex Member Proteins

Cellular Component Analysis

Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).

Only showing terms with a p-value less than or equal to 0.01.

GO Term

P-value

A

B

I

T

pore complex 6.6999E-5 2 52 2 6292
nuclear pore 6.6999E-5 2 52 2 6292
nuclear envelope 9.9543E-4 2 199 2 6292
integral to membrane 1.6363E-3 2 255 2 6292
intrinsic to membrane 1.7276E-3 2 262 2 6292
endomembrane system 3.9918E-3 2 398 2 6292
envelope 6.43E-3 2 505 2 6292
organelle envelope 6.43E-3 2 505 2 6292

Biological Process Analysis

Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).

Only showing terms with a p-value less than or equal to 0.01.

GO Term

P-value

A

B

I

T

nuclear import 5.6994E-5 2 48 2 6292
protein localization in nucleus 5.6994E-5 2 48 2 6292
protein import into nucleus 5.6994E-5 2 48 2 6292
protein import 2.9194E-4 2 108 2 6292
nuclear transport 4.2367E-4 2 130 2 6292
nucleocytoplasmic transport 4.2367E-4 2 130 2 6292
protein localization in organelle 5.5711E-4 2 149 2 6292
protein import into nucleus, docking 1.2712E-3 2 4 1 6292
protein targeting 1.3892E-3 2 235 2 6292
intracellular protein transport 1.6363E-3 2 255 2 6292
cellular macromolecular complex subunit organization 1.6882E-3 2 259 2 6292
protein transport 1.8213E-3 2 269 2 6292
establishment of protein localization 1.8485E-3 2 271 2 6292
cellular protein localization 1.8898E-3 2 274 2 6292
cellular macromolecule localization 2.0305E-3 2 284 2 6292
protein localization 2.3118E-3 2 303 2 6292
macromolecular complex subunit organization 3.2108E-3 2 357 2 6292
macromolecule localization 3.9717E-3 2 397 2 6292
ribosomal protein import into nucleus 7.2981E-3 2 23 1 6292
snRNP protein import into nucleus 7.2981E-3 2 23 1 6292
snRNA export from nucleus 7.2981E-3 2 23 1 6292
NLS-bearing substrate import into nucleus 7.2981E-3 2 23 1 6292
snRNA transport 7.2981E-3 2 23 1 6292
intracellular transport 7.7118E-3 2 553 2 6292
mRNA-binding (hnRNP) protein import into nucleus 7.9314E-3 2 25 1 6292
rRNA export from nucleus 8.5646E-3 2 27 1 6292
rRNA transport 8.5646E-3 2 27 1 6292
nuclear pore organization 8.8811E-3 2 28 1 6292
tRNA export from nucleus 8.8811E-3 2 28 1 6292
tRNA transport 8.8811E-3 2 28 1 6292
establishment of localization in cell 9.0494E-3 2 599 2 6292

Molecular Function Analysis

Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).

Only showing terms with a p-value less than or equal to 0.01.

GO Term

P-value

A

B

I

T

structural constituent of nuclear pore 1.2712E-3 2 4 1 6292
structural molecule activity 2.8947E-3 2 339 2 6292

YRC Informatics Platform - Version 3.0
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