| From Publication: | Qiu J, Noble WS (2008) Predicting Co-Complexed Protein Pairs from Heterogeneous Data. PLoS Comput Biol 4(4): e1000054. doi:10.1371/journal.pcbi.1000054 |
| Notes: | Classifier used Gene Ontology annotations. [FDR: 0.02] [SVM Score: 0.720453905794] |
| Complex Size: | 2 proteins |
Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).
Only showing terms with a p-value less than or equal to 0.01.
| GO Term |
P-value |
A |
B |
I |
T |
| cytosol | 2.0305E-3 | 2 | 284 | 2 | 6292 |
Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).
Only showing terms with a p-value less than or equal to 0.01.
| GO Term |
P-value |
A |
B |
I |
T |
| response to oxidative stress | 1.1854E-4 | 2 | 69 | 2 | 6292 |
| sulfate assimilation | 3.1764E-3 | 2 | 10 | 1 | 6292 |
| response to chemical stimulus | 3.6769E-3 | 2 | 382 | 2 | 6292 |
| vacuole inheritance | 4.7627E-3 | 2 | 15 | 1 | 6292 |
| response to stress | 6.2277E-3 | 2 | 497 | 2 | 6292 |
| retrograde vesicle-mediated transport, Golgi to ER | 8.248E-3 | 2 | 26 | 1 | 6292 |
| vacuole fusion, non-autophagic | 8.5646E-3 | 2 | 27 | 1 | 6292 |
Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).
Only showing terms with a p-value less than or equal to 0.01.
| GO Term |
P-value |
A |
B |
I |
T |
| thiol-disulfide exchange intermediate activity | 1.4147E-6 | 2 | 8 | 2 | 6292 |
| obsolete_molecular_function | 1.1854E-4 | 2 | 69 | 2 | 6292 |
| glutathione peroxidase activity | 1.9064E-3 | 2 | 6 | 1 | 6292 |
| glutathione transferase activity | 2.224E-3 | 2 | 7 | 1 | 6292 |
| peroxidase activity | 6.3477E-3 | 2 | 20 | 1 | 6292 |
| oxidoreductase activity, acting on peroxide as acceptor | 6.3477E-3 | 2 | 20 | 1 | 6292 |
| antioxidant activity | 7.9314E-3 | 2 | 25 | 1 | 6292 |