From Publication: | Qiu J, Noble WS (2008) Predicting Co-Complexed Protein Pairs from Heterogeneous Data. PLoS Comput Biol 4(4): e1000054. doi:10.1371/journal.pcbi.1000054 |
Notes: | Classifier used Gene Ontology annotations. [FDR: 0.038] [SVM Score: 0.722897197133] |
Complex Size: | 2 proteins |
Protein |
GO Cellular Component | GO Biological Process | GO Molecular Function |
SUS1 |
|
|
|
THP1 |
|
|
|
Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).
Only showing terms with a p-value less than or equal to 0.01.
GO Term |
P-value |
A |
B |
I |
T |
pore complex | 6.6999E-5 | 2 | 52 | 2 | 6292 |
nuclear pore | 6.6999E-5 | 2 | 52 | 2 | 6292 |
nuclear envelope | 9.9543E-4 | 2 | 199 | 2 | 6292 |
integral to membrane | 1.6363E-3 | 2 | 255 | 2 | 6292 |
intrinsic to membrane | 1.7276E-3 | 2 | 262 | 2 | 6292 |
endomembrane system | 3.9918E-3 | 2 | 398 | 2 | 6292 |
envelope | 6.43E-3 | 2 | 505 | 2 | 6292 |
organelle envelope | 6.43E-3 | 2 | 505 | 2 | 6292 |
SAGA complex | 6.9813E-3 | 2 | 22 | 1 | 6292 |
SAGA-type complex | 7.2981E-3 | 2 | 23 | 1 | 6292 |
Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).
Only showing terms with a p-value less than or equal to 0.01.
GO Term |
P-value |
A |
B |
I |
T |
RNA export from nucleus | 1.5966E-4 | 2 | 80 | 2 | 6292 |
RNA transport | 1.6371E-4 | 2 | 81 | 2 | 6292 |
nucleic acid transport | 1.6371E-4 | 2 | 81 | 2 | 6292 |
establishment of RNA localization | 1.6371E-4 | 2 | 81 | 2 | 6292 |
RNA localization | 2.1151E-4 | 2 | 92 | 2 | 6292 |
nucleobase, nucleoside, nucleotide and nucleic acid transport | 2.304E-4 | 2 | 96 | 2 | 6292 |
nuclear export | 2.6542E-4 | 2 | 103 | 2 | 6292 |
nuclear transport | 4.2367E-4 | 2 | 130 | 2 | 6292 |
nucleocytoplasmic transport | 4.2367E-4 | 2 | 130 | 2 | 6292 |
transcription from RNA polymerase II promoter | 2.8267E-3 | 2 | 335 | 2 | 6292 |
macromolecule localization | 3.9717E-3 | 2 | 397 | 2 | 6292 |
transcription, DNA-dependent | 6.3792E-3 | 2 | 503 | 2 | 6292 |
RNA biosynthetic process | 6.5067E-3 | 2 | 508 | 2 | 6292 |
transcription | 7.6839E-3 | 2 | 552 | 2 | 6292 |
intracellular transport | 7.7118E-3 | 2 | 553 | 2 | 6292 |
establishment of localization in cell | 9.0494E-3 | 2 | 599 | 2 | 6292 |
Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).
Only showing terms with a p-value less than or equal to 0.01.
GO Term |
P-value |
A |
B |
I |
T |