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View Protein Complex Details

Complex Overview

From Publication: Qiu J, Noble WS (2008) Predicting Co-Complexed Protein Pairs from Heterogeneous Data. PLoS Comput Biol 4(4): e1000054. doi:10.1371/journal.pcbi.1000054
Notes: Classifier used Gene Ontology annotations. [FDR: 0.02] [SVM Score: 0.761938431237]
Complex Size: 2 proteins

Complex Member Proteins

Protein

 GO Cellular Component GO Biological Process GO Molecular Function
SLG1
  • membrane fraction
  • plasma membrane
  • actin cap
    		•
  • response to heat
  • response to osmotic stress
  • cellular cell wall organization
  • Rho protein signal transduction
  • endocytosis
  • actin cytoskeleton organization
    		•
  • transmembrane receptor activity
    		•
    WSC4
  • membrane fraction
  • endoplasmic reticulum membrane
    		•
  • SRP-dependent cotranslational protein targeting to membrane, translocation
  • response to heat
  • protein targeting to ER
  • response to stress
    		•
  • transmembrane receptor activity
    		•

    Cellular Component Analysis

    Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).

    Only showing terms with a p-value less than or equal to 0.01.

    GO Term

    		 P-value

    		 A

    		 B

    		 I

    		 T
    membrane fraction 2.0691E-4 2 91 2 6292
    insoluble fraction 2.0691E-4 2 91 2 6292
    cell fraction 4.1715E-4 2 129 2 6292
    actin cap 3.811E-3 2 12 1 6292

    Biological Process Analysis

    Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).

    Only showing terms with a p-value less than or equal to 0.01.

    GO Term

    		 P-value

    		 A

    		 B

    		 I

    		 T
    response to heat 1.3945E-5 2 24 2 6292
    response to temperature stimulus 2.3495E-5 2 31 2 6292
    response to abiotic stimulus 3.4287E-4 2 117 2 6292
    SRP-dependent cotranslational protein targeting to membrane, translocation 3.4937E-3 2 11 1 6292
    response to stress 6.2277E-3 2 497 2 6292
    Rho protein signal transduction 6.3477E-3 2 20 1 6292
    SRP-dependent cotranslational protein targeting to membrane 6.6645E-3 2 21 1 6292
    cotranslational protein targeting to membrane 7.6148E-3 2 24 1 6292

    Molecular Function Analysis

    Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).

    Only showing terms with a p-value less than or equal to 0.01.

    GO Term

    		 P-value

    		 A

    		 B

    		 I

    		 T
    transmembrane receptor activity 2.779E-6 2 11 2 6292
    receptor activity 4.5979E-6 2 14 2 6292
    molecular transducer activity 1.5966E-4 2 80 2 6292
    signal transducer activity 1.5966E-4 2 80 2 6292
    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle