From Publication: | Qiu J, Noble WS (2008) Predicting Co-Complexed Protein Pairs from Heterogeneous Data. PLoS Comput Biol 4(4): e1000054. doi:10.1371/journal.pcbi.1000054 |
Notes: | Classifier used Gene Ontology annotations. [FDR: 0.02] [SVM Score: 0.810554479943] |
Complex Size: | 2 proteins |
Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).
Only showing terms with a p-value less than or equal to 0.01.
GO Term |
P-value |
A |
B |
I |
T |
spliceosomal complex | 5.0022E-5 | 2 | 45 | 2 | 6292 |
transcription export complex | 1.2712E-3 | 2 | 4 | 1 | 6292 |
U5 snRNP | 4.4455E-3 | 2 | 14 | 1 | 6292 |
ribonucleoprotein complex | 6.6615E-3 | 2 | 514 | 2 | 6292 |
chromosome, telomeric region | 8.5646E-3 | 2 | 27 | 1 | 6292 |
Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).
Only showing terms with a p-value less than or equal to 0.01.
GO Term |
P-value |
A |
B |
I |
T |
nuclear mRNA splicing, via spliceosome | 2.4511E-4 | 2 | 99 | 2 | 6292 |
RNA splicing, via transesterification reactions with bulged adenosine as nucleophile | 2.5011E-4 | 2 | 100 | 2 | 6292 |
RNA splicing, via transesterification reactions | 2.8654E-4 | 2 | 107 | 2 | 6292 |
RNA splicing | 4.3685E-4 | 2 | 132 | 2 | 6292 |
mRNA processing | 6.1087E-4 | 2 | 156 | 2 | 6292 |
cis assembly of pre-catalytic spliceosome | 6.3568E-4 | 2 | 2 | 1 | 6292 |
nuclear mRNA cis splicing, via spliceosome | 9.5344E-4 | 2 | 3 | 1 | 6292 |
mRNA metabolic process | 1.1408E-3 | 2 | 213 | 2 | 6292 |
RNA processing | 3.6384E-3 | 2 | 380 | 2 | 6292 |
spliceosome assembly | 5.7138E-3 | 2 | 18 | 1 | 6292 |
Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).
Only showing terms with a p-value less than or equal to 0.01.
GO Term |
P-value |
A |
B |
I |
T |
ATP-dependent RNA helicase activity | 1.9099E-5 | 2 | 28 | 2 | 6292 |
RNA-dependent ATPase activity | 2.0514E-5 | 2 | 29 | 2 | 6292 |
RNA helicase activity | 4.3504E-5 | 2 | 42 | 2 | 6292 |
ATP-dependent helicase activity | 5.6994E-5 | 2 | 48 | 2 | 6292 |
purine NTP-dependent helicase activity | 5.6994E-5 | 2 | 48 | 2 | 6292 |
helicase activity | 1.7194E-4 | 2 | 83 | 2 | 6292 |
ATPase activity, coupled | 5.5711E-4 | 2 | 149 | 2 | 6292 |
ATPase activity | 1.1194E-3 | 2 | 211 | 2 | 6292 |
nucleoside-triphosphatase activity | 2.7262E-3 | 2 | 329 | 2 | 6292 |
hydrolase activity, acting on acid anhydrides | 3.1391E-3 | 2 | 353 | 2 | 6292 |
hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides | 3.1391E-3 | 2 | 353 | 2 | 6292 |
pyrophosphatase activity | 3.1391E-3 | 2 | 353 | 2 | 6292 |