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View Protein Complex Details

Complex Overview

From Publication: Qiu J, Noble WS (2008) Predicting Co-Complexed Protein Pairs from Heterogeneous Data. PLoS Comput Biol 4(4): e1000054. doi:10.1371/journal.pcbi.1000054
Notes: Classifier used Gene Ontology annotations. [FDR: 0.036] [SVM Score: 0.838735317387]
Complex Size: 2 proteins

Complex Member Proteins

Cellular Component Analysis

Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).

Only showing terms with a p-value less than or equal to 0.01.

GO Term

P-value

A

B

I

T

ER to Golgi transport vesicle 2.3495E-5 2 31 2 6292
transport vesicle 5.0022E-5 2 45 2 6292
coated vesicle 1.7194E-4 2 83 2 6292
membrane-bounded vesicle 2.8654E-4 2 107 2 6292
cytoplasmic vesicle 2.8654E-4 2 107 2 6292
cytoplasmic membrane-bounded vesicle 2.8654E-4 2 107 2 6292
vesicle 3.0291E-4 2 110 2 6292
endoplasmic reticulum membrane 4.4352E-4 2 133 2 6292
endoplasmic reticulum part 5.6464E-4 2 150 2 6292
subsynaptic reticulum 5.6464E-4 2 150 2 6292
nuclear membrane-endoplasmic reticulum network 1.3539E-3 2 232 2 6292
COPII vesicle coat 2.5415E-3 2 8 1 6292
ER to Golgi transport vesicle membrane 2.5415E-3 2 8 1 6292
endoplasmic reticulum 3.3381E-3 2 364 2 6292
endomembrane system 3.9918E-3 2 398 2 6292
transport vesicle membrane 4.7627E-3 2 15 1 6292
intrinsic to Golgi membrane 5.0798E-3 2 16 1 6292
integral to Golgi membrane 5.0798E-3 2 16 1 6292
integral to endoplasmic reticulum membrane 9.8303E-3 2 31 1 6292
intrinsic to endoplasmic reticulum membrane 9.8303E-3 2 31 1 6292

Biological Process Analysis

Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).

Only showing terms with a p-value less than or equal to 0.01.

GO Term

P-value

A

B

I

T

vesicle coating 1.2712E-3 2 4 1 6292
membrane budding 1.5888E-3 2 5 1 6292
vesicle-mediated transport 2.9119E-3 2 340 2 6292

Molecular Function Analysis

Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).

Only showing terms with a p-value less than or equal to 0.01.

GO Term

P-value

A

B

I

T


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle