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View Protein Complex Details

Complex Overview

From Publication: Qiu J, Noble WS (2008) Predicting Co-Complexed Protein Pairs from Heterogeneous Data. PLoS Comput Biol 4(4): e1000054. doi:10.1371/journal.pcbi.1000054
Notes: Classifier used Gene Ontology annotations. [FDR: 0.037] [SVM Score: 0.843616536372]
Complex Size: 2 proteins

Complex Member Proteins

Cellular Component Analysis

Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).

Only showing terms with a p-value less than or equal to 0.01.

GO Term

P-value

A

B

I

T

RSC complex 9.6001E-6 2 20 2 6292
chromatin remodeling complex 2.4511E-4 2 99 2 6292

Biological Process Analysis

Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).

Only showing terms with a p-value less than or equal to 0.01.

GO Term

P-value

A

B

I

T

ATP-dependent chromatin remodeling 1.6421E-5 2 26 2 6292
double-strand break repair 8.0641E-5 2 57 2 6292
chromatin remodeling 1.151E-4 2 68 2 6292
chromatin remodeling at centromere 6.3568E-4 2 2 1 6292
chromatin modification 7.0879E-4 2 168 2 6292
DNA repair 9.2646E-4 2 192 2 6292
chromatin organization 1.036E-3 2 203 2 6292
response to DNA damage stimulus 1.4011E-3 2 236 2 6292
cellular response to stress 2.1173E-3 2 290 2 6292
cellular response to stimulus 3.6193E-3 2 379 2 6292
response to stress 6.2277E-3 2 497 2 6292
chromosome organization 7.7677E-3 2 555 2 6292
double-strand break repair via nonhomologous end joining 7.9314E-3 2 25 1 6292
DNA metabolic process 8.631E-3 2 585 2 6292

Molecular Function Analysis

Given the number of proteins in the complex (A), total proteins annotated with a given GO term (B), and the total number of annotated proteins (T); the p-value represents the chances of randomly having the number of proteins in the complex annotated with a specific GO term (I).

Only showing terms with a p-value less than or equal to 0.01.

GO Term

P-value

A

B

I

T

DNA-dependent ATPase activity 7.5032E-5 2 55 2 6292
ATPase activity, coupled 5.5711E-4 2 149 2 6292
ATPase activity 1.1194E-3 2 211 2 6292
nucleoside-triphosphatase activity 2.7262E-3 2 329 2 6292
hydrolase activity, acting on acid anhydrides 3.1391E-3 2 353 2 6292
hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides 3.1391E-3 2 353 2 6292
pyrophosphatase activity 3.1391E-3 2 353 2 6292

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle